TCONS_00014535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014535
Unique NameTCONS_00014535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014535 ID=TCONS_00014535|Name=TCONS_00014535|organism=Clytia hemisphaerica|type=transcript|length=281bp
ACTGGATCAAATCCTTTCTGTCGGATCGATATCAGTATGTCAAGGTAAAT
GGTAAACTATCCAAGGAAGGTAAAGTACTCAGCGGTGTCCCACAGGGAAG
TGTTCTTGGTCCATTAATTTTTGTGTTATATATCAACGATCTACCTGAGG
TTACAAGGTCTGATATGTACCTCTTTGCAGACGACACTAAGCTTGTTGAG
GAGATAAATAGTGCTGAAGATGCCATTCGCTTGCAACATGATACCGACGC
AATGAAAAGATGGTCAAAGGACTGGCCACTC
Run BLAST on NCBI

transcript from alignment at sc0000188:424617..424897

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014535 ID=TCONS_00014535|Name=TCONS_00014535|organism=Clytia hemisphaerica|type=transcript|length=281bp|location=Sequence derived from alignment at sc0000188:424617..424897 (Clytia hemisphaerica)
GAGTGGCCAGTCCTTTGACCATCTTTTCATTGCGTCGGTATCATGTTGCA
AGCGAATGGCATCTTCAGCACTATTTATCTCCTCAACAAGCTTAGTGTCG
TCTGCAAAGAGGTACATATCAGACCTTGTAACCTCAGGTAGATCGTTGAT
ATATAACACAAAAATTAATGGACCAAGAACACTTCCCTGTGGGACACCGC
TGAGTACTTTACCTTCCTTGGATAGTTTACCATTTACCTTGACATACTGA
TATCGATCCGACAGAAAGGATTTGATCCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008141XLOC_008141Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014535-exon-sc0000188-1491911889:424617..424897TCONS_00014535-exon-sc0000188-1491911889:424617..424897Clytia hemisphaericaexon
TCONS_00014535-exon-sc0000188-1510915933:424617..424897TCONS_00014535-exon-sc0000188-1510915933:424617..424897Clytia hemisphaericaexon
TCONS_00014535-exon-sc0000188-1575043694:424617..424897TCONS_00014535-exon-sc0000188-1575043694:424617..424897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:424617..424897 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29104	2.47242	1.62578	1.55211	1.97416	3.04009	1.25472	1.94027	0.822403	2.95161	0	2.04126	4.76286	3.84709	2.35014	1.44814	2.47166	1.50185	1.94338	3.25682	3.09824	1.76094	0.94466	2.15027	5.41256	2.10183	1.3382	4.39903	0.945509	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top