TCONS_00014533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014533
Unique NameTCONS_00014533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014533 ID=TCONS_00014533|Name=TCONS_00014533|organism=Clytia hemisphaerica|type=transcript|length=603bp
ATTTTCTAGCCGCGGGAAAGAATGAAATTGCTGATTTCGGTCACGGCACT
TTCTTTGCTGCGGAAAATAATAATGCTGCGTCAGCAAAACTTTCTGTCGT
TGCACGGAAACAACATTCCAACAagtttttaaaactgttttgttTTAATC
AGTGGAGTCTTTTTGGTTGGTTATTTCTCATCAAGTCATGGATTTCAAGC
AAATATTTGTTCATTGTTGCAGAGAGTTTAAAGAGAATGTTTCTGGTAAG
TTGAGGGAACACAACAATTTTCGAACCAATCCCACTGAAGGTGTAGTGAA
GAAAGTCCAGCACTATCCTATTCATCGGTCAATCTTTGATTCATGTTTTA
AAGAGGGCAGCCTACTTACTTTAAGGTTGgtttacaaaatttttggtGGG
CGTTCATGTGTAAGGTTCAACCAACATGGCGATATTTCTTTGATTGCACC
TCTGTATTATGTGGTTTCTTCTGGCGGGCATGTGGATTTATGTAGAGGTG
ACATAGTTCTCCCTGTCTGCAAGCTACCATCATTTGATGAGGAGGAGATT
TTTCAAGTATTTGTTCCTAGCAGCTCAGACTCTAACGTTACAGAGAATCC
CAT
Run BLAST on NCBI

protein sequence of TCONS_00014533-protein

>TCONS_00014533-protein ID=TCONS_00014533-protein|Name=TCONS_00014533-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MDFKQIFVHCCREFKENVSGKLREHNNFRTNPTEGVVKKVQHYPIHRSIF
DSCFKEGSLLTLRLVYKIFGGRSCVRFNQHGDISLIAPLYYVVSSGGHVD
LCRGDIVLPVCKLPSFDEEEIFQVFVPSSSDSNVTENP
Run BLAST on NCBI

transcript from alignment at sc0000188:376469..377071

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014533 ID=TCONS_00014533|Name=TCONS_00014533|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at sc0000188:376469..377071 (Clytia hemisphaerica)
ATGGGATTCTCTGTAACGTTAGAGTCTGAGCTGCTAGGAACAAATACTTG
AAAAATCTCCTCCTCATCAAATGATGGTAGCTTGCAGACAGGGAGAACTA
TGTCACCTCTACATAAATCCACATGCCCGCCAGAAGAAACCACATAATAC
AGAGGTGCAATCAAAGAAATATCGCCATGTTGGTTGAACCTTACACATGA
ACGCCCaccaaaaattttgtaaacCAACCTTAAAGTAAGTAGGCTGCCCT
CTTTAAAACATGAATCAAAGATTGACCGATGAATAGGATAGTGCTGGACT
TTCTTCACTACACCTTCAGTGGGATTGGTTCGAAAATTGTTGTGTTCCCT
CAACTTACCAGAAACATTCTCTTTAAACTCTCTGCAACAATGAACAAATA
TTTGCTTGAAATCCATGACTTGATGAGAAATAACCAACCAAAAAGACTCC
ACTGATTAAaacaaaacagttttaaaaactTGTTGGAATGTTGTTTCCGT
GCAACGACAGAAAGTTTTGCTGACGCAGCATTATTATTTTCCGCAGCAAA
GAAAGTGCCGTGACCGAAATCAGCAATTTCATTCTTTCCCGCGGCTAGAA
AAT

Coding sequence (CDS) from alignment at sc0000188:376469..377071

>TCONS_00014533 ID=TCONS_00014533|Name=TCONS_00014533|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000188:376469..377071 (Clytia hemisphaerica)
GGGATTCTCTGTAACGTTAGAGTCTGAGCTGCTAGGAACAAATACTTGAA
AAATCTCCTCCTCATCAAATGATGGTAGCTTGCAGACAGGGAGAACTATG
TCACCTCTACATAAATCCACATGCCCGCCAGAAGAAACCACATAATACAG
AGGTGCAATCAAAGAAATATCGCCATGTTGGTTGAACCTTACACATGAAC
GCCCaccaaaaattttgtaaacCAACCTTAAAGTAAGTAGGCTGCCCTCT
TTAAAACATGAATCAAAGATTGACCGATGAATAGGATAGTGCTGGACTTT
CTTCACTACACCTTCAGTGGGATTGGTTCGAAAATTGTTGTGTTCCCTCA
ACTTACCAGAAACATTCTCTTTAAACTCTCTGCAACAATGAACAAATATT
TGCTTGAAATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008139XLOC_008139Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014533-proteinTCONS_00014533-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014533-exon-sc0000188-1491911889:376469..377071TCONS_00014533-exon-sc0000188-1491911889:376469..377071Clytia hemisphaericaexon
TCONS_00014533-exon-sc0000188-1510915933:376469..377071TCONS_00014533-exon-sc0000188-1510915933:376469..377071Clytia hemisphaericaexon
TCONS_00014533-exon-sc0000188-1575043694:376469..377071TCONS_00014533-exon-sc0000188-1575043694:376469..377071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:376469..377071 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0878081	0.101954	0	0.121431	0.383825	0.115767	0	0	0	0	0	0.179658	0	0.153392	0.0548709	0.337982	0.207853	0	0	0.174121	0	0	0.281591	0	0	0	0.13177	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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