TCONS_00014532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014532
Unique NameTCONS_00014532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length695

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014532 ID=TCONS_00014532|Name=TCONS_00014532|organism=Clytia hemisphaerica|type=transcript|length=695bp
GACATATCGAAATGGAAGAAGGAGATACCCCATCTTTCATCAAAGGTCGA
CAAGGTTGCAGACAACATCAAAACCCTCATGCAAACACGAAGCTCTGATG
CATCTTACGAGACAACACTCAAGAACATCAGCGAACAATTCGAAACGCTA
TTCGATCTCAAGAAGAGTTTCATCTTAGACATCAATGATGAGCTTGCAGC
CAGAGACATCGAAAAGAGTCGCGACTTCAATCGTTCTCGACTAAACATCA
AAATCGAAAAGTTCTCCGGATACGACAGTAAGATCGATTTCTTTACCTTC
CGTACGAACTTTGAAAAGCTCCATCTGAAGACAACACCAAAGCAATTCTT
ACCTGAGCTGTTAAAGAACAACTTCCTCACAGACCACGCCCTTAACTTAG
TTCGCAATCTTGATGACATCGACATCATATGGGAGAGATTAAAAGGTGTC
TATGGTAACCCAAAGATGATGTTATCCAAGAGGCTTCTTCAACTTCAAAC
ATTGGACGTCAGCAAATCAATGAAACCTGAAAAAGCTATCGACAGTCTTA
CCAAAATCATCAACGTGCTTCAAGATTTGATGAGATTAGCACAAGAACAC
AACATTGAAGAGTACCTATACTATGGTGAAGGACTCAACACCATCTACCA
GCTGATCGGTGATGTACAAACAACGAAATTCCTAGACACCATCTG
Run BLAST on NCBI

protein sequence of TCONS_00014532-protein

>TCONS_00014532-protein ID=TCONS_00014532-protein|Name=TCONS_00014532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
DISKWKKEIPHLSSKVDKVADNIKTLMQTRSSDASYETTLKNISEQFETL
FDLKKSFILDINDELAARDIEKSRDFNRSRLNIKIEKFSGYDSKIDFFTF
RTNFEKLHLKTTPKQFLPELLKNNFLTDHALNLVRNLDDIDIIWERLKGV
YGNPKMMLSKRLLQLQTLDVSKSMKPEKAIDSLTKIINVLQDLMRLAQEH
NIEEYLYYGEGLNTIYQLIGDVQTTKFLDTI
Run BLAST on NCBI

transcript from alignment at sc0000188:368784..369478

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014532 ID=TCONS_00014532|Name=TCONS_00014532|organism=Clytia hemisphaerica|type=transcript|length=695bp|location=Sequence derived from alignment at sc0000188:368784..369478 (Clytia hemisphaerica)
CAGATGGTGTCTAGGAATTTCGTTGTTTGTACATCACCGATCAGCTGGTA
GATGGTGTTGAGTCCTTCACCATAGTATAGGTACTCTTCAATGTTGTGTT
CTTGTGCTAATCTCATCAAATCTTGAAGCACGTTGATGATTTTGGTAAGA
CTGTCGATAGCTTTTTCAGGTTTCATTGATTTGCTGACGTCCAATGTTTG
AAGTTGAAGAAGCCTCTTGGATAACATCATCTTTGGGTTACCATAGACAC
CTTTTAATCTCTCCCATATGATGTCGATGTCATCAAGATTGCGAACTAAG
TTAAGGGCGTGGTCTGTGAGGAAGTTGTTCTTTAACAGCTCAGGTAAGAA
TTGCTTTGGTGTTGTCTTCAGATGGAGCTTTTCAAAGTTCGTACGGAAGG
TAAAGAAATCGATCTTACTGTCGTATCCGGAGAACTTTTCGATTTTGATG
TTTAGTCGAGAACGATTGAAGTCGCGACTCTTTTCGATGTCTCTGGCTGC
AAGCTCATCATTGATGTCTAAGATGAAACTCTTCTTGAGATCGAATAGCG
TTTCGAATTGTTCGCTGATGTTCTTGAGTGTTGTCTCGTAAGATGCATCA
GAGCTTCGTGTTTGCATGAGGGTTTTGATGTTGTCTGCAACCTTGTCGAC
CTTTGATGAAAGATGGGGTATCTCCTTCTTCCATTTCGATATGTC

Coding sequence (CDS) from alignment at sc0000188:368784..369478

>TCONS_00014532 ID=TCONS_00014532|Name=TCONS_00014532|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at sc0000188:368784..369478 (Clytia hemisphaerica)
GATGGTGTCTAGGAATTTCGTTGTTTGTACATCACCGATCAGCTGGTAGA
TGGTGTTGAGTCCTTCACCATAGTATAGGTACTCTTCAATGTTGTGTTCT
TGTGCTAATCTCATCAAATCTTGAAGCACGTTGATGATTTTGGTAAGACT
GTCGATAGCTTTTTCAGGTTTCATTGATTTGCTGACGTCCAATGTTTGAA
GTTGAAGAAGCCTCTTGGATAACATCATCTTTGGGTTACCATAGACACCT
TTTAATCTCTCCCATATGATGTCGATGTCATCAAGATTGCGAACTAAGTT
AAGGGCGTGGTCTGTGAGGAAGTTGTTCTTTAACAGCTCAGGTAAGAATT
GCTTTGGTGTTGTCTTCAGATGGAGCTTTTCAAAGTTCGTACGGAAGGTA
AAGAAATCGATCTTACTGTCGTATCCGGAGAACTTTTCGATTTTGATGTT
TAGTCGAGAACGATTGAAGTCGCGACTCTTTTCGATGTCTCTGGCTGCAA
GCTCATCATTGATGTCTAAGATGAAACTCTTCTTGAGATCGAATAGCGTT
TCGAATTGTTCGCTGATGTTCTTGAGTGTTGTCTCGTAAGATGCATCAGA
GCTTCGTGTTTGCATGAGGGTTTTGATGTTGTCTGCAACCTTGTCGACCT
TTGATGAAAGATGGGGTATCTCCTTCTTCCATTTCGATATGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008138XLOC_008138Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014532-exon-sc0000188-1491911889:368784..369478TCONS_00014532-exon-sc0000188-1491911889:368784..369478Clytia hemisphaericaexon
TCONS_00014532-exon-sc0000188-1510915933:368784..369478TCONS_00014532-exon-sc0000188-1510915933:368784..369478Clytia hemisphaericaexon
TCONS_00014532-exon-sc0000188-1575043694:368784..369478TCONS_00014532-exon-sc0000188-1575043694:368784..369478Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014532-proteinTCONS_00014532-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:368784..369478 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.75199	1.85084	2.149	1.94073	0.393775	0.46675	1.03238	2.37231	0.799698	1.90491	0.517708	2.23639	0.145649	0.100839	0.082903	0.311387	0.109601	0.224675	0.388	0	0.21174	0.309838	0.753298	0.608762	0.156753	0.139898	7.00677	3.63208	0.0810237	0.577852
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top