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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014496 ID=TCONS_00014496|Name=TCONS_00014496|organism=Clytia hemisphaerica|type=transcript|length=2844bpRun BLAST on NCBI protein sequence of TCONS_00014496-protein >TCONS_00014496-protein ID=TCONS_00014496-protein|Name=TCONS_00014496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp RKKKKILNEKTKMLDVVIVGGGASGLACCHRLLKHDPTLNIKILEAKDRLRun BLAST on NCBI transcript from alignment at sc0000188:72562..99819- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014496 ID=TCONS_00014496|Name=TCONS_00014496|organism=Clytia hemisphaerica|type=transcript|length=27258bp|location=Sequence derived from alignment at sc0000188:72562..99819- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000188:72562..99819- >TCONS_00014496 ID=TCONS_00014496|Name=TCONS_00014496|organism=Clytia hemisphaerica|type=CDS|length=13620bp|location=Sequence derived from alignment at sc0000188:72562..99819- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014496 vs. Swiss-Prot (Human)
Match: AOFA (Amine oxidase [flavin-containing] A OS=Homo sapiens GN=MAOA PE=1 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 1.296e-48 Identity = 134/443 (30.25%), Postives = 220/443 (49.66%), Query Frame = 3
Query: 39 MLDVVIVGGGASGLACCHRLLKHDPTLNIKILEAKDRLGGRIFAKDLKVADGTESYDLGGQWIGRSQIHAIRLLKEFDLSLYDQNYDGSTVNILDKGTTFYTSSPLSLAFQSVY--FAY-DMIQGMKKIDEYSQEISIEEPLSHPRAKEWDNLPMSHAKQYLFKHQWSRKLLDIAFITM---FGFDLNQASFLYVLLYAKCAGGMTVLIDDRFPGNAQESKVKGGMFKLIEKLKGAVGEEKILLNRRVTSIHNHVIDDQNGFCSIRTENTEEFQCKYVVMAVPPHLISNIKMTPELPTEHKRLLQFSNVGCLMKCIATYKRKFWQENGLSGMSLHWPYYAEERSIEHPVSITYDATSCNGK-PALVGFIGGSLIQKMRHLTEDKIKRAIINSFVLFFGD-EAKEYIDIAFQDWSKVEDNGGCPVTFTTPGAVSKYGDVCLRQP 1343
M DVV++GGG SGL+ L ++ +++ +LEA+DR+GGR + + D D+GG ++G +Q +RL KE + Y N V + KG T+ P AF V+ AY D + ID +EI + P A +WD + M K+ + K W++ A++ + + ++ S L+ L Y K GG T + QE K GG ++ E++ +G++ + LN VT + D + I T N E ++CKYV+ A+PP L + I PELP E +L+Q +G ++KC+ YK FW++ G + E+ + P+SIT D T +G PA++GFI ++ L ++ K+ I + G EA + ++W + + +GGC + PG +++YG V +RQP
Sbjct: 13 MFDVVVIGGGISGLSAAKLLTEYG--VSVLVLEARDRVGGRTYTIRNEHVD---YVDVGGAYVGPTQNRILRLSKELGIETYKVNVSERLVQYV-KGKTY----PFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPWEAQHADKWDKMTM---KELIDKICWTKTARRFAYLFVNINVTSEPHEVSALWFLWYVKQCGGTTRIFS--VTNGGQERKFVGGSGQVSERIMDLLGDQ-VKLNHPVTHV-----DQSSDNIIIETLNHEHYECKYVINAIPPTLTAKIHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKKDYCGCMI-----IEDE--DAPISITLDDTKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRV-IRQP 426 The following BLAST results are available for this feature:
BLAST of TCONS_00014496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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