|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014484 ID=TCONS_00014484|Name=TCONS_00014484|organism=Clytia hemisphaerica|type=transcript|length=2586bpRun BLAST on NCBI protein sequence of TCONS_00014484-protein >TCONS_00014484-protein ID=TCONS_00014484-protein|Name=TCONS_00014484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=660bp MATNKDVISTSQLFIDLSRNFKNGNYAEAQKFAGKILKLDANDVDALKCKRun BLAST on NCBI transcript from alignment at sc0000188:136101..149672+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014484 ID=TCONS_00014484|Name=TCONS_00014484|organism=Clytia hemisphaerica|type=transcript|length=13572bp|location=Sequence derived from alignment at sc0000188:136101..149672+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000188:136101..149672+ >TCONS_00014484 ID=TCONS_00014484|Name=TCONS_00014484|organism=Clytia hemisphaerica|type=CDS|length=43626bp|location=Sequence derived from alignment at sc0000188:136101..149672+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014484 vs. Swiss-Prot (Human)
Match: SRP72 (Signal recognition particle subunit SRP72 OS=Homo sapiens GN=SRP72 PE=1 SV=3) HSP 1 Score: 396.356 bits (1017), Expect = 2.300e-125 Identity = 237/592 (40.03%), Postives = 371/592 (62.67%), Query Frame = 3
Query: 180 ISTSQLFIDLSRNFKNGNYAEAQKFAGKILKLDANDVDALKCKIVCLLQQSSFKSALDSINSNEKKGLL---KMDFEKAYCLYRLNRLKEAESVISQIPEKSDREKDLLAQVRYRMEDYKGCLDLYKDLVKNSDDDYGDEREANMAAVIAAAKLWKN---QDMGVSHVRSDTYELCYNYACLQLAQGEMEKAKATLLNAETLCRQFLASXXXXXXXXXXXXLSIIKGQLSYIYQLQGKADQALTEYNKVLKNKPSDVALTAVISNNIVAIHKDKDLFNSKKRLKAMSSEGLNHKLTCQQQEVMEVNKCLMMMYTNQPAQCRKTIEELKKNFTNISQERI--ALLEVAIFAREKQWDKAIDHLQKIVETGDCTDGTI-LTLAQLSLQKGKYEDVIKLLQKLTSIRYKPAVVSLCVSLYNILGEVEKASSYLDEAIK----HCSSVPALKKDAVTFMRECSNMKFTAGDIESGVKMLERLRSEDPSEVSTLAKIVVAYSKIDPEKAKQYSVDLPSLDTSGNAALNLDVLEMTEMIGSFRFSKKRKTSVDETEAKEEAIM-XXXXXXXXXXXLPKSYNPDVDPDPERWLPRWERS 1913
+S L+ +++R +NG++ A K KIL+++ +DV AL CK+VCL+Q SFK AL+ IN++ K +L + FEKAYC YRLNR++ A I +++D+ K+L QV YR+E Y CL +Y+DLV+NS DDY +ER+ N++AV+AA W+ +++G+ + T+ELCYN AC + QG++ +A L AE LCR+ L+ + D TEE+ + EL+II GQ++YI QLQG+ ++AL YN+++K KP+DV L AVI+NNI+ I+KD+++F+SKK++K ++EG+ KL+ +Q + +E NK L+ MYTNQ QCRK L+ S E + L++ A REKQ KAI+ LQ+ + I LT+AQL + +G +L+ + +++KP +VS V++Y+ +++ A +AI+ H PA ++ +RE +N K G + + L++L ++P ++ TLA+++ AYS +DPEKAK S LPS D+ +L +DV + G+ KK +++ KE+ +K++K+KKGKLPK+Y+P V PDPERWLP ERS
Sbjct: 9 VSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINTHTK--VLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGL---QEGTHELCYNTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQCRKISASLQSQ----SPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPA----HLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDS---MSLKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERS 584 The following BLAST results are available for this feature:
BLAST of TCONS_00014484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.