TCONS_00014450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014450
Unique NameTCONS_00014450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2064

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014450 ID=TCONS_00014450|Name=TCONS_00014450|organism=Clytia hemisphaerica|type=transcript|length=2064bp
ttcaggtaagaaatatcaaagtaaaattaaaagaaaCAACAACACCAACA
ACGACATAATCAAAATGGTGTCGACAATCACTTCACTGACAACGCTGTCA
ACTGCAATCTTCAACCAAACATCAAATAACGCTACAACAACACAATCTTC
ATCACATAGCCATGGAACTTGTGAACTAGAAACGAAAACATATGTTGTGC
TTCTAGGCTATGTGCTCATCTTCTTCATCGGAGTCACGGGTAACGGTCTT
GTTTTGTTCTCATTCCGCAGTTTCTGGAGACGTGGACCTGTTATCGAATT
ACTTATCCTGTATCTggcatttttcaatttcttatcATCCATGTTGGACC
CAATGATGTTCGGCTACTGGCTAGTCACGTGTTATAAATCATGGCATTTG
GGATGGTATGGCTGCAAGTTTGTATCACCACTATGTCGTATTTTCACCAA
TATCTCAATCGGTATAATTCTCATCATGGCGATCGATCGGTGTCGCGCGA
TCGTGTTCCCTTTCCGGAAAAGGCTAAGTAGAGGACAGGTACATTTGTTA
GCCGCTGGTGCTATACTGCTTGGTTTTCTCAGTGAAGTTCATCATATAGT
TGGGTCATACATTAATGATAACGGCTTATGCTCAATTGTTCTAGTACGGA
CTCCGACCTATCTCTACCCGTCACTCATCTCCATAAGCGGCCGTATATTG
ATCATTATATTTGTTTTCATCTCAACCACCTTGTTAGCACATATCAAACT
GAATAGATCTCAACATCGGCGCTTTTTACAAAGAAGTTGTGCAAATCCTC
ATGGTATGACTCGAAGAGGTCGCAAAGTGACGCTCATGTTAGTGGTCATG
TCAAGCGTGTTCAGTATAACCGTTCTACCACGTGATTTCTTTCACTTGAT
CTATAACGCCAGTTGGGGACTGGGCTCTGGTAATGGAATCATATTATCGT
AAGTTTTTAATAATTTCATTTCACCAAATTTGGCACTCAAGCATCGCTTA
ACCTACAACATATAATGATTTCTATTCGTACTTTTGACCCATAACCTCAC
TCGGCTATTTTGGAGAGATTGTTATGAACTTCCTATCAACAGTCCGGATC
AGAGGAAAAACTTTGTACGGACCATTTTCCCGTAGGATAATTGTCTGATC
TTTTGTACACAAGGGAAGCCTGCTTATTTGAAAATATCTCTCATGAAAAG
TTTCcatttgaatttttcaattggtttaatttttaaacatctgtataaTA
TCAACCGTTCTCTATTTTATCATGACAGGCCAACCATGAAGTATATCAAC
CAACTCTTAAAGCTTCTTCAGACAAGCAATGTCGTGTACAACGTCTTCAT
ATACTCACGCATGCATGAAACGTTCCGAAGATTCGAATCATGCTGCTTAC
CTAAGAGATATCTACGCAAGATGTTCACGCGGAGAGGAAGTGTTATGGTA
CGCCGGGACAGCGAGACGACAACGATGACGACTCCAGTACATTTGTGAAC
AACCAGATAAAAACGTGGACAGTTGATTAAACACTCAAATGAACAAAAAA
CCCTAAACCCTTCTACTCACTGTGTGGGTTTTatggagaaaaaacttttt
cagagTCCATTCATGAGAATTTAAACTCTCACGTCTCACGggtgaaaata
aatcaaaataagtgaagtgtttttcttttcttaaacTGTCAAAAGTTTGA
ACCTATGGCAATGCCACGGATTGTGCTTAACTTTTTGATGATGTAAGCAA
GAGAGTTTGGGCAACATTGGAATTGGAATAGTTGATGTTTATACACCCGT
ATTTTCGTCtggtttattttgaagaatgtgatgagttttaaattttttgt
tttattattcaGTGTTATCACAGCAATCTAAAAGTCAtcatttaagaaaa
aaacttatgaaactggaaaaagaccaaaaacatCGAAATAAAGGTTGAAA
AAGATAATCTTCGAGAGATAACCATCcgtctttagagaaaggaaagcttt
taaaatttatcttaaAGGAACTAGAGAAGATTAAGTATCATGGCGAGCAA
TCAGTTTCCTGAGG
Run BLAST on NCBI

protein sequence of TCONS_00014450-protein

>TCONS_00014450-protein ID=TCONS_00014450-protein|Name=TCONS_00014450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
SGKKYQSKIKRNNNTNNDIIKMVSTITSLTTLSTAIFNQTSNNATTTQSS
SHSHGTCELETKTYVVLLGYVLIFFIGVTGNGLVLFSFRSFWRRGPVIEL
LILYLAFFNFLSSMLDPMMFGYWLVTCYKSWHLGWYGCKFVSPLCRIFTN
ISIGIILIMAIDRCRAIVFPFRKRLSRGQVHLLAAGAILLGFLSEVHHIV
GSYINDNGLCSIVLVRTPTYLYPSLISISGRILIIIFVFISTTLLAHIKL
NRSQHRRFLQRSCANPHGMTRRGRKVTLMLVVMSSVFSITVLPRDFFHLI
YNASWGLGSGNGIILS
Run BLAST on NCBI

transcript from alignment at sc0000187:66091..68154

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014450 ID=TCONS_00014450|Name=TCONS_00014450|organism=Clytia hemisphaerica|type=transcript|length=2064bp|location=Sequence derived from alignment at sc0000187:66091..68154 (Clytia hemisphaerica)
CCTCAGGAAACTGATTGCTCGCCATGATACTTAATCTTCTCTAGTTCCTt
taagataaattttaaaagctttcctttctctaaagacgGATGGTTATCTC
TCGAAGATTATCTTTTTCAACCTTTATTTCGatgtttttggtctttttcc
agtttcataagtttttttcttaaatgaTGACTTTTAGATTGCTGTGATAA
CACtgaataataaaacaaaaaatttaaaactcatcacattcttcaaaata
aaccaGACGAAAATACGGGTGTATAAACATCAACTATTCCAATTCCAATG
TTGCCCAAACTCTCTTGCTTACATCATCAAAAAGTTAAGCACAATCCGTG
GCATTGCCATAGGTTCAAACTTTTGACAgtttaagaaaagaaaaacactt
cacttattttgatttattttcaccCGTGAGACGTGAGAGTTTAAATTCTC
ATGAATGGActctgaaaaagttttttctccatAAAACCCACACAGTGAGT
AGAAGGGTTTAGGGTTTTTTGTTCATTTGAGTGTTTAATCAACTGTCCAC
GTTTTTATCTGGTTGTTCACAAATGTACTGGAGTCGTCATCGTTGTCGTC
TCGCTGTCCCGGCGTACCATAACACTTCCTCTCCGCGTGAACATCTTGCG
TAGATATCTCTTAGGTAAGCAGCATGATTCGAATCTTCGGAACGTTTCAT
GCATGCGTGAGTATATGAAGACGTTGTACACGACATTGCTTGTCTGAAGA
AGCTTTAAGAGTTGGTTGATATACTTCATGGTTGGCCTGTCATGATAAAA
TAGAGAACGGTTGATAttatacagatgtttaaaaattaaaccaattgaaa
aattcaaatgGAAACTTTTCATGAGAGATATTTTCAAATAAGCAGGCTTC
CCTTGTGTACAAAAGATCAGACAATTATCCTACGGGAAAATGGTCCGTAC
AAAGTTTTTCCTCTGATCCGGACTGTTGATAGGAAGTTCATAACAATCTC
TCCAAAATAGCCGAGTGAGGTTATGGGTCAAAAGTACGAATAGAAATCAT
TATATGTTGTAGGTTAAGCGATGCTTGAGTGCCAAATTTGGTGAAATGAA
ATTATTAAAAACTTACGATAATATGATTCCATTACCAGAGCCCAGTCCCC
AACTGGCGTTATAGATCAAGTGAAAGAAATCACGTGGTAGAACGGTTATA
CTGAACACGCTTGACATGACCACTAACATGAGCGTCACTTTGCGACCTCT
TCGAGTCATACCATGAGGATTTGCACAACTTCTTTGTAAAAAGCGCCGAT
GTTGAGATCTATTCAGTTTGATATGTGCTAACAAGGTGGTTGAGATGAAA
ACAAATATAATGATCAATATACGGCCGCTTATGGAGATGAGTGACGGGTA
GAGATAGGTCGGAGTCCGTACTAGAACAATTGAGCATAAGCCGTTATCAT
TAATGTATGACCCAACTATATGATGAACTTCACTGAGAAAACCAAGCAGT
ATAGCACCAGCGGCTAACAAATGTACCTGTCCTCTACTTAGCCTTTTCCG
GAAAGGGAACACGATCGCGCGACACCGATCGATCGCCATGATGAGAATTA
TACCGATTGAGATATTGGTGAAAATACGACATAGTGGTGATACAAACTTG
CAGCCATACCATCCCAAATGCCATGATTTATAACACGTGACTAGCCAGTA
GCCGAACATCATTGGGTCCAACATGGATgataagaaattgaaaaatgccA
GATACAGGATAAGTAATTCGATAACAGGTCCACGTCTCCAGAAACTGCGG
AATGAGAACAAAACAAGACCGTTACCCGTGACTCCGATGAAGAAGATGAG
CACATAGCCTAGAAGCACAACATATGTTTTCGTTTCTAGTTCACAAGTTC
CATGGCTATGTGATGAAGATTGTGTTGTTGTAGCGTTATTTGATGTTTGG
TTGAAGATTGCAGTTGACAGCGTTGTCAGTGAAGTGATTGTCGACACCAT
TTTGATTATGTCGTTGTTGGTGTTGTTGtttcttttaattttactttgat
atttcttacctgaa

Coding sequence (CDS) from alignment at sc0000187:66091..68154

>TCONS_00014450 ID=TCONS_00014450|Name=TCONS_00014450|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at sc0000187:66091..68154 (Clytia hemisphaerica)
TTACGATAATATGATTCCATTACCAGAGCCCAGTCCCCAACTGGCGTTAT
AGATCAAGTGAAAGAAATCACGTGGTAGAACGGTTATACTGAACACGCTT
GACATGACCACTAACATGAGCGTCACTTTGCGACCTCTTCGAGTCATACC
ATGAGGATTTGCACAACTTCTTTGTAAAAAGCGCCGATGTTGAGATCTAT
TCAGTTTGATATGTGCTAACAAGGTGGTTGAGATGAAAACAAATATAATG
ATCAATATACGGCCGCTTATGGAGATGAGTGACGGGTAGAGATAGGTCGG
AGTCCGTACTAGAACAATTGAGCATAAGCCGTTATCATTAATGTATGACC
CAACTATATGATGAACTTCACTGAGAAAACCAAGCAGTATAGCACCAGCG
GCTAACAAATGTACCTGTCCTCTACTTAGCCTTTTCCGGAAAGGGAACAC
GATCGCGCGACACCGATCGATCGCCATGATGAGAATTATACCGATTGAGA
TATTGGTGAAAATACGACATAGTGGTGATACAAACTTGCAGCCATACCAT
CCCAAATGCCATGATTTATAACACGTGACTAGCCAGTAGCCGAACATCAT
TGGGTCCAACATGGATgataagaaattgaaaaatgccAGATACAGGATAA
GTAATTCGATAACAGGTCCACGTCTCCAGAAACTGCGGAATGAGAACAAA
ACAAGACCGTTACCCGTGACTCCGATGAAGAAGATGAGCACATAGCCTAG
AAGCACAACATATGTTTTCGTTTCTAGTTCACAAGTTCCATGGCTATGTG
ATGAAGATTGTGTTGTTGTAGCGTTATTTGATGTTTGGTTGAAGATTGCA
GTTGACAGCGTTGTCAGTGAAGTGATTGTCGACACCATTTTGATTATGTC
GTTGTTGGTGTTGTTGtttcttttaattttactttgatatttcttacctg
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008076XLOC_008076Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014450-proteinTCONS_00014450-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014450-exon-sc0000187-1491911889:66091..68154TCONS_00014450-exon-sc0000187-1491911889:66091..68154Clytia hemisphaericaexon
TCONS_00014450-exon-sc0000187-1510915933:66091..68154TCONS_00014450-exon-sc0000187-1510915933:66091..68154Clytia hemisphaericaexon
TCONS_00014450-exon-sc0000187-1575043694:66091..68154TCONS_00014450-exon-sc0000187-1575043694:66091..68154Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:66091..68154 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0382509	0	0.0433097	0.127115	0.0773753	0.122286	0.491776	0.644553	0.564083	0.159705	0.05813	0.318436	5.91468	4.20065	1.05343	1.17711	1.06245	2.48699	12.9914	14.637	2.23748	2.27293	1.07452	1.59492	1.84808	2.21748	0.498271	0.25189	0.0636833	0.0432555
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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