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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014447 ID=TCONS_00014447|Name=TCONS_00014447|organism=Clytia hemisphaerica|type=transcript|length=2014bp
CCGACTTTATTGATTTCTACTGGCACATTTTTCGATATCTGGCGATAGTT
TTTGCTTTTAATCTTgcgtttgaaataaaaataaatctctTTCAATTCAG
GTGGCATACAACCAGTGGCGCTTAGTTGCAAATCGTATCGAAAAATAAGC
GTAGAAGATCACACATACGACCAGAGTAGAGAAAATGCCATCTGTCCTAT
GACCCACCTTTTCGTAGATGTAAACAAATATCTAGATGTCGAAGGTCAAT
CGTCAGTCGAGAGAACAGTTGTTCGCAGTGGCGTACCTATCACATACGTT
TATCTTGCGTTCTTTGAAAGGGAGACTACCTTCAACGCACTCAATGAATT
CTTTAATCTCTGCACTGTACCACAACTTGACACTCAATTACGACAAGGCC
GTTCTTTGAAGGAGAACTTGAGTTTTATTGTGGACAATGGACACGGTGAG
GATCCGGATAGTCCTTTGACTAAGATGTGCCTTGTTCGTATCTTGATAAG
CTTAAAGATTCAACGCATTACCCAACGTTCGTTCGCTGAATACAATAGTA
AAAGAAACTTTGTAGAGCGAGTCCATGCATCAGAGAATATGGTTCTTGCT
CAACATGGTCCTTTTGCATCCAAACAAGTCCACGCAAACGCACGAATTGG
ATCTCCTGAACAcgaagaaaaaatggaaaaaatggctgaaaatgtCGTAG
AATGTCTCAAGATTCNCAAACAAGTCCACGCAAACGCACGAATTGGATCT
CCTGAACAcgaagaaaaaatggaaaaaatggctgaaaatgtCGTAGAATG
TCTCAAGACGGCAACATTCAGTGAAAATCAACTGATTGCTATTCCTGGTC
CAAAAACCAAGGTTTTCAACGACGAAGAAAGATTGCAAGAGTTTCTAAAA
CTTTCCGAAGAAAAGAAAGCATCGTGCGGTTGGACCTACAGTCCGGTGAA
AGGAACATTGATGAATGAGCTAAAACAACTATGGGGCTTCAACGACAAGA
AAAGAAAGTATTTCGATGACTACGTACTTGCTAATAGTATGAATGTCGAA
AAATCTTCTTGGCTGGACAAGTACTCTGctaccttttcgtcaacatgaaa
taaactattacttacttacttaccaGTATCTACCATCCCGATTTCACAGG
ACGCCGGTATGAAATCCAACCAATCCCCGATTATGTGAGATGGTATGAAA
CAAGCGGGGAACTACACTACATGTCAACCGAGGAAACAATTTCAACAACT
ACAGAAATCGAAGAATTAAGAAGCTTTCCGGGCATCTTCCTCCCAGACAA
ATTGATTCAGTACCTTCACACCGTTTCATCGCAAGTTCCGGATGAAGTTC
TCAAAAATTTCACCGCACTGTGTTGGATTCCTTTCTCTGACGTGAAGAAA
AGGTTCGAATAACTAAATGAAAAGATGGCAAATGACTTACAGAACAGTCA
AGACCGTGCAGTGTGGGCACAACACCAGTTGTTCAACATGACTGTACCAG
AGCTGAAACAATAATGCTCAACCCTTAATATCAACACAAAGAATCTGTTC
AAACACGAAATTGTTGAGTCACTTGCGAACGCAACGAAACAAAAGAAACC
GAAACCTTCGAAGCAAGTAAAATTCGAAAAGATACCCGAAACAATTAAGG
GGATCTCAACATTCATTATTCCTGTTTTTCCTTCAATGAAANAACTTTTA
ATGGTCTCCATCGTTCATTTGTATACATTTCATCTTTACGAGCACCTATG
CGTTCTACCTTGATTATCGTCACATCGAAACCCATTTgttgtttcaatgt
tctttCTATAAAATCTTTGTCACCAACTCGTTGCCCTTCTTCGTTTTCGT
GCTTTTTTTCACCTAAATCATGCACCATGATGTTGCACTTGGTTGATTTT
AGCCAATGCTCCTCTTCGTTCACTgatttgatgaaactttttatggtcac
ctcttgtttttgtagatcttctttggtgacttctgcatatgattgttttt
ttgtttctgtgtNN Run BLAST on NCBI protein sequence of TCONS_00014447-protein >TCONS_00014447-protein ID=TCONS_00014447-protein|Name=TCONS_00014447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MTHLFVDVNKYLDVEGQSSVERTVVRSGVPITYVYLAFFERETTFNALNE
FFNLCTVPQLDTQLRQGRSLKENLSFIVDNGHGEDPDSPLTKMCLVRILI
SLKIQRITQRSFAEYNSKRNFVERVHASENMVLAQHGPFASKQVHANARI
GSPEHEEKMEKMAENVVECLKIXKQVHANARIGSPEHEEKMEKMAENVVE
CLKTATFSENQLIAIPGPKTKVFNDEERLQEFLKLSEEKKASCGWTYSPV
KGTLMNELKQLWGFNDKKRKYFDDYVLANSMNVEKSSWLDKYSATFSST Run BLAST on NCBI transcript from alignment at sc0000187:22202..24215 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014447 ID=TCONS_00014447|Name=TCONS_00014447|organism=Clytia hemisphaerica|type=transcript|length=2014bp|location=Sequence derived from alignment at sc0000187:22202..24215 (Clytia hemisphaerica)
NNacacagaaacaaaaaaacaatcatatgcagaagtcaccaaagaagatc
tacaaaaacaagaggtgaccataaaaagtttcatcaaatcAGTGAACGAA
GAGGAGCATTGGCTAAAATCAACCAAGTGCAACATCATGGTGCATGATTT
AGGTGAAAAAAAGCACGAAAACGAAGAAGGGCAACGAGTTGGTGACAAAG
ATTTTATAGaaagaacattgaaacaacAAATGGGTTTCGATGTGACGATA
ATCAAGGTAGAACGCATAGGTGCTCGTAAAGATGAAATGTATACAAATGA
ACGATGGAGACCATTAAAAGTTNTTTCATTGAAGGAAAAACAGGAATAAT
GAATGTTGAGATCCCCTTAATTGTTTCGGGTATCTTTTCGAATTTTACTT
GCTTCGAAGGTTTCGGTTTCTTTTGTTTCGTTGCGTTCGCAAGTGACTCA
ACAATTTCGTGTTTGAACAGATTCTTTGTGTTGATATTAAGGGTTGAGCA
TTATTGTTTCAGCTCTGGTACAGTCATGTTGAACAACTGGTGTTGTGCCC
ACACTGCACGGTCTTGACTGTTCTGTAAGTCATTTGCCATCTTTTCATTT
AGTTATTCGAACCTTTTCTTCACGTCAGAGAAAGGAATCCAACACAGTGC
GGTGAAATTTTTGAGAACTTCATCCGGAACTTGCGATGAAACGGTGTGAA
GGTACTGAATCAATTTGTCTGGGAGGAAGATGCCCGGAAAGCTTCTTAAT
TCTTCGATTTCTGTAGTTGTTGAAATTGTTTCCTCGGTTGACATGTAGTG
TAGTTCCCCGCTTGTTTCATACCATCTCACATAATCGGGGATTGGTTGGA
TTTCATACCGGCGTCCTGTGAAATCGGGATGGTAGATACtggtaagtaag
taagtaatagtttatttcatgttgacgaaaaggtagCAGAGTACTTGTCC
AGCCAAGAAGATTTTTCGACATTCATACTATTAGCAAGTACGTAGTCATC
GAAATACTTTCTTTTCTTGTCGTTGAAGCCCCATAGTTGTTTTAGCTCAT
TCATCAATGTTCCTTTCACCGGACTGTAGGTCCAACCGCACGATGCTTTC
TTTTCTTCGGAAAGTTTTAGAAACTCTTGCAATCTTTCTTCGTCGTTGAA
AACCTTGGTTTTTGGACCAGGAATAGCAATCAGTTGATTTTCACTGAATG
TTGCCGTCTTGAGACATTCTACGacattttcagccattttttccattttt
tcttcgTGTTCAGGAGATCCAATTCGTGCGTTTGCGTGGACTTGTTTGNG
AATCTTGAGACATTCTACGacattttcagccattttttccattttttctt
cgTGTTCAGGAGATCCAATTCGTGCGTTTGCGTGGACTTGTTTGGATGCA
AAAGGACCATGTTGAGCAAGAACCATATTCTCTGATGCATGGACTCGCTC
TACAAAGTTTCTTTTACTATTGTATTCAGCGAACGAACGTTGGGTAATGC
GTTGAATCTTTAAGCTTATCAAGATACGAACAAGGCACATCTTAGTCAAA
GGACTATCCGGATCCTCACCGTGTCCATTGTCCACAATAAAACTCAAGTT
CTCCTTCAAAGAACGGCCTTGTCGTAATTGAGTGTCAAGTTGTGGTACAG
TGCAGAGATTAAAGAATTCATTGAGTGCGTTGAAGGTAGTCTCCCTTTCA
AAGAACGCAAGATAAACGTATGTGATAGGTACGCCACTGCGAACAACTGT
TCTCTCGACTGACGATTGACCTTCGACATCTAGATATTTGTTTACATCTA
CGAAAAGGTGGGTCATAGGACAGATGGCATTTTCTCTACTCTGGTCGTAT
GTGTGATCTTCTACGCTTATTTTTCGATACGATTTGCAACTAAGCGCCAC
TGGTTGTATGCCACCTGAATTGAAagagatttatttttatttcaaacgcA
AGATTAAAAGCAAAAACTATCGCCAGATATCGAAAAATGTGCCAGTAGAA
ATCAATAAAGTCGG Coding sequence (CDS) from alignment at sc0000187:22202..24215 >TCONS_00014447 ID=TCONS_00014447|Name=TCONS_00014447|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0000187:22202..24215 (Clytia hemisphaerica)
tcatgttgacgaaaaggtagCAGAGTACTTGTCCAGCCAAGAAGATTTTT
CGACATTCATACTATTAGCAAGTACGTAGTCATCGAAATACTTTCTTTTC
TTGTCGTTGAAGCCCCATAGTTGTTTTAGCTCATTCATCAATGTTCCTTT
CACCGGACTGTAGGTCCAACCGCACGATGCTTTCTTTTCTTCGGAAAGTT
TTAGAAACTCTTGCAATCTTTCTTCGTCGTTGAAAACCTTGGTTTTTGGA
CCAGGAATAGCAATCAGTTGATTTTCACTGAATGTTGCCGTCTTGAGACA
TTCTACGacattttcagccattttttccattttttcttcgTGTTCAGGAG
ATCCAATTCGTGCGTTTGCGTGGACTTGTTTGNGAATCTTGAGACATTCT
ACGacattttcagccattttttccattttttcttcgTGTTCAGGAGATCC
AATTCGTGCGTTTGCGTGGACTTGTTTGGATGCAAAAGGACCATGTTGAG
CAAGAACCATATTCTCTGATGCATGGACTCGCTCTACAAAGTTTCTTTTA
CTATTGTATTCAGCGAACGAACGTTGGGTAATGCGTTGAATCTTTAAGCT
TATCAAGATACGAACAAGGCACATCTTAGTCAAAGGACTATCCGGATCCT
CACCGTGTCCATTGTCCACAATAAAACTCAAGTTCTCCTTCAAAGAACGG
CCTTGTCGTAATTGAGTGTCAAGTTGTGGTACAGTGCAGAGATTAAAGAA
TTCATTGAGTGCGTTGAAGGTAGTCTCCCTTTCAAAGAACGCAAGATAAA
CGTATGTGATAGGTACGCCACTGCGAACAACTGTTCTCTCGACTGACGAT
TGACCTTCGACATCTAGATATTTGTTTACATCTACGAAAAGGTGGGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014447-exon-sc0000187-1491911889:22202..24215 | TCONS_00014447-exon-sc0000187-1491911889:22202..24215 | Clytia hemisphaerica | exon |
| TCONS_00014447-exon-sc0000187-1510915933:22202..24215 | TCONS_00014447-exon-sc0000187-1510915933:22202..24215 | Clytia hemisphaerica | exon |
| TCONS_00014447-exon-sc0000187-1575043694:22202..24215 | TCONS_00014447-exon-sc0000187-1575043694:22202..24215 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000187 | supercontig | sc0000187:22202..24215 . |
Blast
The following BLAST results are available for this feature:
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