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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014372 ID=TCONS_00014372|Name=TCONS_00014372|organism=Clytia hemisphaerica|type=transcript|length=517bp
tcgcagcgcgcgcaaagggagaccggcctTAATGAAGTATGAGTAAGCAT
GCTATACCAGTGACGacgtaaagtttttttcttatttcacaTACGAACTT
TATCTGATATTCAGATGTAACAAACGAGAAGAACGATATCGAGGGAGCTG
CACTATTAACATAGGAAAAAACATGAATTTGAAGGTAAATTTGAAAGCTT
CAAGAAACTTCAACTTCAAGAAAGAAATTAGCAACGTCAATAAATATCAA
TGGCATTATCCTTACCTGCAAATTTTCCGTTCTTGCACGTCACGCCCCAC
CTTCGAACAATGTACGAACAATCGTTGGAGGTTGCAGTTTCCAATGGACG
CCCTTCAATCCATAATGGTAGCAATGTGGAACACACAATCACTATTACAA
AGAAATGAGAATAATTGAACATAATGATATGTTTTAGTAAGTtgtttcaa
aaagttctgctctcaatattttttaaagcaaatgatttttcacattttga
tcATCGGTCACTTTTAT Run BLAST on NCBI transcript from alignment at sc0000187:255176..264507+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014372 ID=TCONS_00014372|Name=TCONS_00014372|organism=Clytia hemisphaerica|type=transcript|length=9332bp|location=Sequence derived from alignment at sc0000187:255176..264507+ (Clytia hemisphaerica)
tcgcagcgcgcgcaaagggagaccggcctTAATGAAGTATGAGTAAGCAT
GCTATACCAGTGACGacgtaaagtttttttcttatttcacaTACGAACTT
TATCTGATATTCAGATGTAACAAACGAGAAGAACGATATCGAGGGAGCTG
CACTATTAACATAGGAAAAAACATGAATTTGAAGGTAAGGTCACTTAATA
TTCGAATTTTCATAGATTTTCAATCtttagtaagtttttttttttcaacg
taGCTCTTGCTTTGTCAATTTTGAGATAGAAAAACCACTACTCCTGGTTG
GCTTGTTTACAAAGAATTTTGCTGCTTCTCTTTGTAATGGCGAACTTGCT
GAAGAGTTTTAAAGCCGATATGATATTGAACTACAGAGTACAATTCTTTT
ATCTCTTCCTTAGCTGTAATGCTAGAGAAAATGAGTTAGGACAAGGGTTG
GGAGGGGGAGAAAGGACCAAATTCGCAACAACAAAATGTTGACTTCAAAA
caataaagaacgacaaatttagCCATCCCAACACCGATCGTAGAAGTGAC
ACCACCCTAGCGATTTTATTCCTCCTTGTGTTTTACGCAGTTTAACGGTT
TAAAGAACGATAAAGTACGCATGCGCTTTGGAAATAAAACAATAGATGCG
AAAAAAGATTCTTCATCCATTTGTTGGAGAGATGTTGAGTGCTAATGTTT
TTGGGACCAGCATATTTTTTGCGATTAAGCGAGTTTTAGACTTTCTTTGc
tttgctttgttttgttttttaaaataagaccATAAAATAAGACCCTTAGA
CTATTACGTGACAGAAGttttaattttcgtttttttgctCTGATGTATAA
TGTCATTTTAGTTCTTGACGTTTATGATGAGtgtattttgaagattttca
aatCCTCGGATCTTTTTGGACTTGTTCCAGATGagtgatacacgtttttt
tctataagaacaaactataagagAATAATGCTTCGAttaccaaaatgtta
agaacaagttaagaatattttaaggctttgtggactctgaAACACCCGAT
TTAcaaaggaaaatggacaaaaagacTCAGAAAATGGcgaaagtaagaac
atgttaagaacatttttaggcttgaaactcaaaagttaagaacatccgaa
ggcttcaaaaattttagatgctCTTATAGGAAATGCATGTAGAGTGAAGT
GAAGAAAAGCGCACGGGAATACTTTGATATGTAtaattaaatcaaatcaa
acgaTTTGGGATACTGGGTGAATACGTCAAAACAGTCTCATCAAATTAGT
CCCGTTGCCAAATGGAGGCTGTTCAAAACTATTTCCAAATACATATTCAT
TCGACGAAAATCAACACGAACAttgaatattttacaatttcttaggaaaa
tggtcaaaaatactctcaaaatgtacgtgttgagaacatttttaggcttg
aaactgaaaaagttaagaacattcgaaggcttcaaaaatttaggaTGCTA
TTATAAAGACGTGTAGTGCTAGTAAGGACCTTTCACGTTTTTTTACAata
acaaactttataagaacacaaggcttcgttggccaaaatattaagaacaa
gttgggAACATTTAAAGCTTTctaacacccaatttctttgaaaaacggAT
AAAAATAAGTGATGAAAATAAGAttgttaaggaaaattttaggcttcaaa
aattttggatgtcaTTATaacaaaaaacgtgtatagcgagggggtttatc
taaagaatcctacatttactaaaaaagaacgacaaatcctacatttacta
aaaaagaacgacaaatcctacatttactaaaaaagaacgacaaatcctac
atttactaaaaaagaacgacaaatccTATAAAAANATCCTACATTTacta
aaaaagaacgacaaatcctacatttactaaaaaagaacgacaaatcctac
atttactaaaaaagaacgacaaatcctacatttactaaaaaagaacgaca
aatcctacatttactaaaaaagaacgacaaatcctacatttactaaaaaa
gaacgacaaatcctacatttactaaaaaagaacgacaaatcctacattta
ctaaaaaagaacgacaaatcctacatttactaaaaaagaacgacaaatct
CATAAAAAACCCTTACGAATTAATTCCTCTAGACAACAGCTACTCccgta
aaaaattcccgtctcacgtttgttcctcttatgtagatgaaactcgtctt
agactatagcatagtctatagAGGAACAGGTTGTAGCTATTTATCCTGAT
CTTACAATTGCAAGTCCCATCGGAATACGACATCCAACATATCTTCCTTT
GTCGGATTTCGGGATTCCTATTAATTATACGTCAAATAGACTTCCTGATC
TATAGTTACgagcttttttaataagaatacactttataagaatgtccacc
atgaaaatggtcaaaaagaataagaataaaccagccgaggctggaaggtc
agccaatagagcttagctagatagctttaataagtgggttaacagatgta
agagatgtactgaaacagagtagactNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNcatcaaacaattaagctatagt
tcattactataaaataaaagagaaacatagtgtaattaaaactttttgtt
aatttcattccagtcagttatgacacattttcttctgttggatgtagaca
atatccatatctaaCCAAAGtgtcagaaccaaaataaagatatccatcaa
atatacatagaaattgtactttttgttttacttgataaaactccaataac
actttaaactaacNatttctgcagtccgctttctgcaagtcggataagag
atatgtataaaaagttatcgccattcattccattccatcattcagtcaaa
acgtgcgccaaggttagaaaaacacaatctgcgtccggaactgcgtgaNt
taaactaacaagctacaaactttaagtcacaaagcacaaactccagaaaa
acacaatttgcatcaaaatctttgcaaaagggagttcatatttataacat
ttcaacaggaactgtattttggtagacttggtcaaattacagaaaccatt
tgtcagttgtctgcaaggccaatgagtACGTANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNgtcatcatttggttcccgtcatc
tgaccgaccctgatttacggtcagcaggtagagttggagagtcggaaagc
ttttccgctgctttgctggatttccaatGTTGagctctgcacgctctgtg
tttacaacttttcaaatcgaagtagcgagccgcatgctaatatggagagt
aaaccgaaaaccagtttatccacggtttctcaatttcttaattcggatca
gtccacacggattccctttcaacaagatgtataccgaccgaccgaccgac
cgaccgaccgaccgaatgacccccactttttaaaaaaaatgacgggaatc
aaataattttttgcgattcgccttatcaaacacttccaaaccaagtccaa
aaaagcacgattgcatccaggctttatcaaatttagacagtagctgtact
tttgtaaactttatcaaattccaataacattataacaccatcaatcccac
ctagaggaaacaagaaaaatatgtttttattgcaaaaactaataaaaagc
agcaataaaaagtatcagaaaattcaacataaacaaaaacttgagcaaac
ggctttaaaccttcaaaagatgtagaaaaaaaatccccttgatgaaaatc
ttgtgtttgatttgccgagttaaaaaaataaatgacagaaattgaagctt
gcaacagatttacactggaaatactttggtacaacactgacttatcacat
ctgacttatcgcttgagccgccatcttgaaacaccacattatgataaaca
acgcacgctaaaagtacccaaaaagttaacccgatcggaaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAGTGAGatcgatcgggaaatcgga
ttttttttttgccgtcttatggaactggaagaaaattttacctatttgaa
tgctcagcttaggctgaccaataatactaagaatatcaccatcatagaat
tttgctactcaaggctaagaatgccatttttagagcattttcaattataa
gttgtcaattacccccaagtaaggctcactcactcctttcacaaaaatgc
cattttatgcttgagacgtatgtactaaatgccccggagggggggggggc
agtcaggcaaattgtaAGGggggacttttgataaatgcactgtaaggggg
gaaattttagcaaacctgggaaaaatagcaaatttttgctctaaaagagt
tttgaaaaaatgcactgtaagggtggaaattttagcaaacctgggaaaaa
tagcaaatttttgctctaaaagagttttgaaaaaatgcactgtaagggtg
gaaattttagcaaacctgggaaaaatagcaaatttttgctctaaaagagt
tttgaaaaaatgcactgtaagggtggaaattttagcaaacctgggaaaaa
tagcaaatttttgctctaaaagagttttgaaaaaatgcactgtaagggtg
gaaattttagcaaacctgggaaaaatagcaaatttttgctctaaaagagt
tttgaaaaaatgcactgtaagggtggaaattttagcaaacctgggaaaaa
tagcaaatttttgctctaaaagagttttgaaaaaatgcactgtaagggtg
gaaattttagcaaacctgggaaaaatagcaaatttttgctctaaaagagt
tttgaaaaaatgcactgtaagggtggaaattttagcaaacctgggaaaaa
tagcaaatttttgctctaaaagagttttgaaaaaatgcactgtaagggtg
gaaattttagcaaacctgggaaaaatagcaaatttttgctctaaaagagt
tttgaaaaaatgcactgtaagggtggaaattttagcaaacctgggaaaaa
tagcaaatttttgctctaaaagagttttgaaaaaatgcactgtaagggta
tgaatttcaccgatttttttctgcactgtagggagcgattctaaaagcca
atgtTTTCGCCGCACAtcccgtcagttggtaaacccactgcccccccccc
cccccccccgggactaaatgttaaatctagtctgaattaggatcctagct
taagaatgctgtaagaatatctttaatgtgattttcccaaaaaagttaag
aatatccatgatgaaattgatctacaccattcttataaaaaagcgtgtac
agtAATAGTTTTGCTTATCACATTTGATTAATTAATTTTGTGTCGATGAC
ATCCTTTTGGACTATAATTAGATCTCATTCATTACTATTCTTACGGTGTG
CTTTATTCATCTAGTTGCTTAAGTTAGGCTGCTGAGGGCGATCACGATGA
AATAGAAGCTTAAAGGGGCTAGAAGTGAATTTCCTATGTAGGGTTTGAAT
CCATTAAATCCTACCTAAAATGCGCGGCCTAGCGCGGACCACGTGGAATT
TCACACAAAAtgctggattgaaagtaaaactttATACCAccagattaaaa
aaaatatatcactcgaaaacaaagagatcactagattcaatccgtcatca
aaaatatggCGCAtatttttttaaggcttcactttttcttgtctgtcttt
tctttatttcattGGGCGATCATCATCTCATTTCGAGATTTTGGTGGATA
CTCGCGAATGAGAATGCGTagaatcccgggggggggggataaaGTCTCCt
taagggttacaaaaaacaaattcgCTTACGGAAAGGGTCTAAATCTCTAA
ATCGAAAgctttccccatttttcaaagggtcgcgattttcaaagatttgg
actaaaattgagtaaaaatcgacaaaaatctTTGGGAAAATCGATTTCTG
GCttggacatacccgtcacctcgcaaacctaatttaaaaattcattgcCA
GAGAGGGCATGTTGTCGTTGTCTTTTCttatttaagatttttcaaaccga
ccgctgcgatggagtgtgaGTGAGAGAGGGTCTCTACTTCATCGTAGAGg
tttccgtacgggaatttatttttgtttatcaaaCAGATattgcgcacaga
gtgtactacgaaactATAAACGATAGATACACACTCGCTCAGAGtaccgc
ccccccccccccgggNaaatcatacttcatcgtaGAGATTTCCGTACGGG
AAATTGTTTATTAAACAGATattgcgcacagagtgtactacgaaactATA
AACGATAGATACACTCTCGCCCAGAGTACCGCCCCCCGGGTATGCGTAGA
ATATAGAAATGGAAAAAGTTTGTAGAAAACATAACACAATGAGCATTTTC
TGAAACAGTCTTGTTCTTCCTGTTGAATATCAAGAAAAATTCTTGATTAA
CCTTCATACTTGTAAAGaccgctacccactcagcatctTATGGTCGGCGA
ACAAGGCGCGTGGCTTAATTTTCGCATAAATCAAGccattattgcataaa
ttaagcCTCCAAAGGCTGTCGTTTTGTGGAACGAGAAAAGTGTTTAGCGA
CCAAAGTGCTTGAGCCGTACGCCTTGGtcgccgaccataaaatgctgagt
gggtagcggccttaATATAATAACACTCTAAATATATTTATTCCCTTATT
TACATAACACTCTTTTACATTGATGatggaaaaacaaaaagatccCTTGA
AAAAGTTAACAAAGAAAGCTTTCCTAAAAAGACTCATCCAGcgattttca
tttgaaatctaACTTCATTACCGGTGCACAGATATCTAAAAGTCACTTGA
TTGTACATCTTCGTGTCTTTATTTCAGTAGAGATAAAGAAGcccttttta
ttgttttatgtaagatatctgtggtaGGTTGATGATAAAAAGTGGAAAAA
CTGAGATTGGAATTCCAGAAAGTTCACTAGTTAGCATTGAAACTGCTTGG
TAAATTAtggtttttaatttaaaaaaaaaacaagttgtAAAAAATGCAAA
TGTTTTTTTCCCAGCACAAAATGCAACTTTGCCACATTTCTATTCATTTT
TTAGTTAAGCCATAGCTTTTGGAACTTTATTGAAAGTTTCCTGTGATTAG
TTGTTGATGATATTACCATTCGACTATCCTTTTCTTCTGTATTCATTTGA
GCAATATTTCGTTTGGTTCTTCTTTGGAACGCTTTCAACATCAACTTCAT
CTGTTTCATCTGTCTTTCAAGGCTTCCAGCGTTCACTACAAGTGCAATAA
AGATTAATTTATAGAGAGGTTGAATACTAAAGGGTGGAACTGTATATGTC
GATGGAATTTTACATGTTTGTATATACCCCTGATGGGTAAATTTCNAGAT
TAATTTATAGAGAAGTTGAATACTACAGGGAAGTACTGTATCTGTCGATG
AATTTGTACAGGCTTGTAATACCCCTGCAATGggtaaatttttgattttg
aatgttAAAAATGactggaaaagaaaataatcttaatttgaaaaatccGT
CGAAAATCTCTTTTGTTCTGACCTACAGACTAATATTGTGGAATTTTTTA
AGTCACTCAGACAAAACAAAGGTCTCCAAGTCCAATTCTATTTTCATAGG
TAAATTTGAAAGCTTCAAGAAACTTCAACTTCAAGAAAGAAATTAGCAAC
GTCAATAAATATCAATGGCATTATCCTTACCTGCAAATTTTCCGTTCTTG
CACGTCACGCCCCACCTTCGAACAATGTACGAACAATCGTTGGAGGTTGC
AGTTTCCAATGGACGCCCTTCAATCCATAATGGTAGCAATGTGGAACACA
CAATCACTATTACAAAGAAATGAGAATAATTGAACATAATGATATGTTTT
AGTAAGTtgtttcaaaaagttctgctctcaatattttttaaagcaaatga
tttttcacattttgatcATCGGTCACTTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014372-exon-sc0000187-1491911889:255176..255359 | TCONS_00014372-exon-sc0000187-1491911889:255176..255359 | Clytia hemisphaerica | exon |
| TCONS_00014372-exon-sc0000187-1510915933:255176..255359 | TCONS_00014372-exon-sc0000187-1510915933:255176..255359 | Clytia hemisphaerica | exon |
| TCONS_00014372-exon-sc0000187-1575043694:255176..255359 | TCONS_00014372-exon-sc0000187-1575043694:255176..255359 | Clytia hemisphaerica | exon |
| TCONS_00014372-exon-sc0000187-1491911889:264175..264507 | TCONS_00014372-exon-sc0000187-1491911889:264175..264507 | Clytia hemisphaerica | exon |
| TCONS_00014372-exon-sc0000187-1510915933:264175..264507 | TCONS_00014372-exon-sc0000187-1510915933:264175..264507 | Clytia hemisphaerica | exon |
| TCONS_00014372-exon-sc0000187-1575043694:264175..264507 | TCONS_00014372-exon-sc0000187-1575043694:264175..264507 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000187 | supercontig | sc0000187:255176..264507 + |
Blast
The following BLAST results are available for this feature:
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