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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014369 ID=TCONS_00014369|Name=TCONS_00014369|organism=Clytia hemisphaerica|type=transcript|length=1360bp
TTTCATTTCATCTTTGATTATTTAATTcgaatttaaaatcaaatctcTAT
GACAACCAAAACGCATGAATGATTTCGTTCGAACAGTTTTAAAGAAATCA
GATAGAAAATTTGATAACATACTGAAAATGAGTATTTGGTTAGTTTAGGT
TCCAATGAAACAACAGTTTAGGCTGATCGATTAATTACTGATCTGTTGAA
AAAATTCGGCCCACTGGCCATGAATGAATGAGCAGGTGGCAATTGGTGTG
CAGTCAAGGAGaaaatttgtgatttcttttCTCGCATCAAGATATTTTAA
GATCACAGAGTTCCTCATTCGACATCGAACACCTCCACTGAACAGACATT
AACAGAGAATATCTGAAAAGtCTGTCCACACAATGGAAACCAAAATTGTC
GTACTCTTCGCCATTGTTGGCGCCTGCATGGCAGGAATCCCAAGACACAT
GGACAAACGTTCACCAAGCGCATGCGCTTCCCCATGTCCATCATACTGTG
CACCAGCCTGTCAACCCGTATGTTGTATCCCAGTTCCACCAgctccacca
ccaccaccaggCCCACCAGGAGGCCCAGGACCAATCGGAGCCCCAGGACC
AGCCGGACCTAACGGACCACCAGGACCTCCAGGACCCCCAGGACCACCAG
GAGGCCCAGGACCAGCCGGACCACCCGGAGCCCCAGCTGGACCACCAGGA
CCCCCAGGAGCACCAGGACCAAACGGACCACCAGGAAACCGAGGACCAAA
CGGACCACCAGGACCCCCAGGACCAGGAGGACCACCAGGACCAAACGGAC
CACCAgctccaccaccaccaccacctccaccaccaccaTGCCCAGCTGTC
TGTGTCACTCAATGTGTCCCATCATGCCCACCACCATGTTGCCCACAAAA
GAAACATTAAATTGTTTCACAGACTAGACGCACTTCTTATAATTGAATAG
CTCTATTCGTAAATaagaatttgtaaaaattttgataCGAGAGCCGTTTA
TGAACTATATTTCAGCGAGGGAGGATCTTATTTGTTGAGATACGACTTCA
TTGAATGGGATAATGAACTTGAAAATTGTATTATTTTTGTAACTCATTTG
CACTTATGATTATATAATAAAAGATAAACTTGGAtacaaaatctatttta
aaaaaacttaacaCTGTATGTTTTTTTACTTGCTTGTGTTTTTTNTTATG
ATTATATAATAAAAGATAAACTTGGAtacaaaatctattttaaaaaaact
taacaCTGTATGTTTTTTTACTTGcttgtgttttttttatcttcagaGTT
TGACTTATTCTAAACACCCAACTCGAACTCGACACTTACTCCAAAGTTCc
ggaaattttg Run BLAST on NCBI protein sequence of nb001 protein >TCONS_00014369-protein ID=TCONS_00014369-protein|Name=nb001 protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
METKIVVLFAIVGACMAGIPRHMDKRSPSACASPCPSYCAPACQPVCCIP
VPPAPPPPPGPPGGPGPIGAPGPAGPNGPPGPPGPPGPPGGPGPAGPPGA
PAGPPGPPGAPGPNGPPGNRGPNGPPGPPGPGGPPGPNGPPAPPPPPPPP
PPCPAVCVTQCVPSCPPPCCPQKKH Run BLAST on NCBI transcript from alignment at sc0000187:202855..205177+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014369 ID=TCONS_00014369|Name=TCONS_00014369|organism=Clytia hemisphaerica|type=transcript|length=2323bp|location=Sequence derived from alignment at sc0000187:202855..205177+ (Clytia hemisphaerica)
TTTCATTTCATCTTTGATTATTTAATTcgaatttaaaatcaaatctcTAT
GACAACCAAAACGCATGAATGATTTCGTTCGAACAGTTTTAAAGAAATCA
GATAGAAAATTTGATAACATACTGAAAATGAGTATTTGGTTAGTTTAGGT
TCCAATGAAACAACAGTTTAGGCTGATCGATTAATTACTGATCTGTTGAA
AAAATTCGGCCCACTGGCCATGAATGAATGAGCAGGTGGCAATTGGTGTG
CAGTCAAGGAGaaaatttgtgatttcttttCTCGCATCAAGATATTTTAA
GATCACAGAGTTCCTCATTCGACATCGAACACCTCCACTGAACAGACATT
AACAGAGAATATCTGAAAAGGTAAGCATCTCTTAACAATAAAAAAAAAGG
AAAATGAAAAATAATTTGAAAATGATTTTGAATTGATGGTTCTTTTAATT
ATATTCTTTCTTCTATTGTTATGTGATATTAAAATTCTTCTATTGTTTTC
AATTGGGAATTAAACTGAATTCTGTTttattctttattattttttctttg
ttttggatttgaagctattgtttcttttgtgttttttcaATTAAAGTCTG
ACTAGTCTAAATTAGAATATTAACTATTCGATTAtcctacaaaaagacaa
aagaaacaataactttaaaataaagaatgaaaaagtacCTGTTTGATTTA
TGAAAGTCTTGTTAGATTCTCAACTATTCTTCGTATTTATAATcagttta
ttttattattttcttttatagtCTGTCCACACAATGGAAACCAAAATTGT
CGTACTCTTCGCCATTGTTGGCGCCTGCATGGCAGGAATCCCAAGACACA
TGGGTAAGCatctgaattttcattttcatttaaattcaaaattcgaTTCT
TCTTCTCGAAAATATTAGATAATGAATTCTTCATTTGAATAAGTTNAAAT
TCGATTCTTCTTCTCGAAAATATTAGATAATGAATTCTTCATTTGAATAA
GTTTCTTCAGATTTTTGGTTGAACGTTTTGCGGTTAAACTGAatcttttt
gaatttaaatttttacattttctgaATTCCAAAAGTTAATTGTCTGAGAA
TTTAGAAATCTTCTTCTTgattttcttgaattaatttcttTGTCGNttaa
atttttacattttctgaATTCCAAAAGTTAATTGTCTGAGAATTTAGAAA
TCTTCTTCTTgattttcttgaattaatttcttTGTCGAACTTTTGGAAAC
ATTTCGAACGCTTTTTTTCTCGAATGTTCATTCATGCGCAAAATGAGCTC
ACTCGACTCACATTCAGCATATCAAATCATGATTTCTCAATATTGATCCa
aagtttctttattttctttttcacatattttcttatattcataattcttt
attttgtttttacagACAAACGTTCACCAAGCGCATGCGCTTCCCCATGT
CCATCATACTGTGCACCAGCCTGTCAACCCGTATGTTGTATCCCAGTTCC
ACCAgctccaccaccaccaccaggCCCACCAGGAGGCCCAGGACCAATCG
GAGCCCCAGGACCAGCCGGACCTAACGGACCACCAGGACCTCCAGGACCC
CCAGGACCACCAGGAGGCCCAGGACCAGCCGGACCACCCGGAGCCCCAGC
TGGACCACCAGGACCCCCAGGAGCACCAGGACCAAACGGACCACCAGGAA
ACCGAGGACCAAACGGACCACCAGGACCCCCAGGACCAGGAGGACCACCA
GGACCAAACGGACCACCAgctccaccaccaccaccacctccaccaccacc
aTGCCCAGCTGTCTGTGTCACTCAATGTGTCCCATCATGCCCACCACCAT
GTTGCCCACAAAAGAAACATTAAATTGTTTCACAGACTAGACGCACTTCT
TATAATTGAATAGCTCTATTCGTAAATaagaatttgtaaaaattttgata
CGAGAGCCGTTTATGAACTATATTTCAGCGAGGGAGGATCTTATTTGTTG
AGATACGACTTCATTGAATGGGATAATGAACTTGAAAATTGTATTATTTT
TGTAACTCATTTGCACTTATGATTATATAATAAAAGATAAACTTGGAtac
aaaatctattttaaaaaaacttaacaCTGTATGTTTTTTTACTTGCTTGT
GTTTTTTNTTATGATTATATAATAAAAGATAAACTTGGAtacaaaatcta
ttttaaaaaaacttaacaCTGTATGTTTTTTTACTTGcttgtgttttttt
tatcttcagaGTTTGACTTATTCTAAACACCCAACTCGAACTCGACACTT
ACTCCAAAGTTCcggaaattttg Coding sequence (CDS) from alignment at sc0000187:202855..205177+ >TCONS_00014369 ID=TCONS_00014369|Name=TCONS_00014369|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at sc0000187:202855..205177+ (Clytia hemisphaerica)
ATGGAAACCAAAATTGTCGTACTCTTCGCCATTGTTGGCGCCTGCATGGC
AGGAATCCCAAGACACATGGACAAACGTTCACCAAGCGCATGCGCTTCCC
CATGTCCATCATACTGTGCACCAGCCTGTCAACCCGTATGTTGTATCCCA
GTTCCACCAgctccaccaccaccaccaggCCCACCAGGAGGCCCAGGACC
AATCGGAGCCCCAGGACCAGCCGGACCTAACGGACCACCAGGACCTCCAG
GACCCCCAGGACCACCAGGAGGCCCAGGACCAGCCGGACCACCCGGAGCC
CCAGCTGGACCACCAGGACCCCCAGGAGCACCAGGACCAAACGGACCACC
AGGAAACCGAGGACCAAACGGACCACCAGGACCCCCAGGACCAGGAGGAC
CACCAGGACCAAACGGACCACCAgctccaccaccaccaccacctccacca
ccaccaTGCCCAGCTGTCTGTGTCACTCAATGTGTCCCATCATGCCCACC
ACCATGTTGCCCACAAAAGAAACATTAAATGGAAACCAAAATTGTCGTAC
TCTTCGCCATTGTTGGCGCCTGCATGGCAGGAATCCCAAGACACATGGAC
AAACGTTCACCAAGCGCATGCGCTTCCCCATGTCCATCATACTGTGCACC
AGCCTGTCAACCCGTATGTTGTATCCCAGTTCCACCAgctccaccaccac
caccaggCCCACCAGGAGGCCCAGGACCAATCGGAGCCCCAGGACCAGCC
GGACCTAACGGACCACCAGGACCTCCAGGACCCCCAGGACCACCAGGAGG
CCCAGGACCAGCCGGACCACCCGGAGCCCCAGCTGGACCACCAGGACCCC
CAGGAGCACCAGGACCAAACGGACCACCAGGAAACCGAGGACCAAACGGA
CCACCAGGACCCCCAGGACCAGGAGGACCACCAGGACCAAACGGACCACC
AgctccaccaccaccaccacctccaccaccaccaTGCCCAGCTGTCTGTG
TCACTCAATGTGTCCCATCATGCCCACCACCATGTTGCCCACAAAAGAAA
CATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014369-exon-sc0000187-1491911889:202855..203224 | TCONS_00014369-exon-sc0000187-1491911889:202855..203224 | Clytia hemisphaerica | exon |
| TCONS_00014369-exon-sc0000187-1510915933:202855..203224 | TCONS_00014369-exon-sc0000187-1510915933:202855..203224 | Clytia hemisphaerica | exon |
| TCONS_00014369-exon-sc0000187-1575043694:202855..203224 | TCONS_00014369-exon-sc0000187-1575043694:202855..203224 | Clytia hemisphaerica | exon |
| TCONS_00014369-exon-sc0000187-1491911889:203626..203707 | TCONS_00014369-exon-sc0000187-1491911889:203626..203707 | Clytia hemisphaerica | exon |
| TCONS_00014369-exon-sc0000187-1510915933:203626..203707 | TCONS_00014369-exon-sc0000187-1510915933:203626..203707 | Clytia hemisphaerica | exon |
| TCONS_00014369-exon-sc0000187-1575043694:203626..203707 | TCONS_00014369-exon-sc0000187-1575043694:203626..203707 | Clytia hemisphaerica | exon |
| TCONS_00014369-exon-sc0000187-1491911889:204270..205177 | TCONS_00014369-exon-sc0000187-1491911889:204270..205177 | Clytia hemisphaerica | exon |
| TCONS_00014369-exon-sc0000187-1510915933:204270..205177 | TCONS_00014369-exon-sc0000187-1510915933:204270..205177 | Clytia hemisphaerica | exon |
| TCONS_00014369-exon-sc0000187-1575043694:204270..205177 | TCONS_00014369-exon-sc0000187-1575043694:204270..205177 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000187 | supercontig | sc0000187:202855..205177 + |
Blast
The following BLAST results are available for this feature:
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