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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014368 ID=TCONS_00014368|Name=TCONS_00014368|organism=Clytia hemisphaerica|type=transcript|length=1733bp
tttttaacaTCTATTGTTCTATTCGAAGAGTgcgattttttttgattttc
ctaCATGTTATATAGCAAAATCGAACGTGCACATTCGAATCTGTATATAC
GTTGTGTAACTTCACTAGTTGACGCCAGGGACAATCATCTGGCCCTGGAA
CgcagaaatttcattttaattaagTGGTAATTAAAAAGCATACAGAAAGA
GGTAGGGAACAAACACACaaaattttaatgtttaatcCGTTTAAAAACCT
GCCGAAGGAAGTTTAGTAAAACAAGAAAGATTGGAAAAGTTATCGAATCG
TGAAATTGGTTGATGAGTTTGCGCACATACAGGATAGTTTAAGTTCAACT
GACCGTGTAAATTGTTTTTGATCTTTCACTCGAGCGATTCTTCCTTTCAA
CTCGctaaagaaagaagaaagaaaaattttgtctTGAACTTTCCCAGtcT
TGGTTATAACATAACTCTGGGGAGTTTTTTGGAAAGATTGCAATGCACTT
ATACAAGTTGATTTGCCTTTCGGCAATCGTTTTGGCAATCAATGCTGATA
ACACACTGTCCAGTATCTACAGACCAAAGAGAGGCGCTGGCTGTCTCTTA
GGATGTTCTGCATCATGCGCACCTAGATGTTTACCAAGTTGTTGtgcacc
acctccaccaccaccacctccaccaccagcATGCCCTGCTTCATGTGCCA
CCGCATGCACACCAGCCTGTCCACAAATCTGTTGTGTTCCAGCTcttcca
ccaccaccaccaggTCCACCAGGACCCGTCGGCCCAGTCGGAGCTATCGG
ACCACAAGGACCAAACGGACCTCCAGGGCCACCAGGACCACCTGGACCAC
CAGGTCTTGCAGGACCTGCAGGACCACCAGGACTACCACAACCACCACCA
TTACCTTGTCCAAAACAATGTTACACAGTGTGCACACCAACTTGTCCAAA
CTATTGTTGCCCAGCCgccccaccaccaccaccaccgccATGCCCACCCG
TCTGCTCAGTAGCCTGTGTTCAAGCTTGTCCACCAGCCTGCTGTCCAAGT
AAACGATCAGACATTTCAAAAGCTGAAGATAAACCAATTATTATCATCGA
GCGAAAACGATTataaactaaaaactaaaaagatGTAGCCTTGGAAACTT
GGCTTGCAACCATCTCTCTTAGACTCTGGAAAATCTACACATTGTTTAAA
ATATGATggtaattttcttaaattttaggtgacaatattttaacaaattt
tctttattttgacgaCCTAAGCTAGGAGATGAGCTTTATAACACCAACAA
TCTTATATCATCGAGGGTGGGGGActttatcttcttttttatatCAACAG
TTATAAGGGCCGCTGggccgttggaaagataatctaAAGATTTCTTTCTA
GCAAAAAGGCCCAGCTTTGTATGCCAAGATAGTTATCGTAAAGAATCCAA
CTCTTTCTAAGACGTATAACGAGCTTGAGAACTTTTCGAAATTTAAGTTT
TTGTATTCGTTTGTGAATTTCATGAAAATTCGTTTGGAATTGCGATgtgg
aaaaacttttatttctctatttttgatatataaatagtgagtatgtaatt
ttttgagataaaaaaagTATTAGAAAAACCACAGAAACAAACTAACGCAA
ATTCTCCATTAATTAATGTTTTTAACTGTACGCTTATTTGGCTTTGATAA
CTACAAAATATGAATAGAGCATCAGAATATGTT Run BLAST on NCBI protein sequence of TCONS_00014368-protein >TCONS_00014368-protein ID=TCONS_00014368-protein|Name=TCONS_00014368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MHLYKLICLSAIVLAINADNTLSSIYRPKRGAGCLLGCSASCAPRCLPSC
CAPPPPPPPPPPACPASCATACTPACPQICCVPALPPPPPGPPGPVGPVG
AIGPQGPNGPPGPPGPPGPPGLAGPAGPPGLPQPPPLPCPKQCYTVCTPT
CPNYCCPAAPPPPPPPCPPVCSVACVQACPPACCPSKRSDISKAEDKPII
IIERKRL Run BLAST on NCBI transcript from alignment at sc0000187:189005..191402+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014368 ID=TCONS_00014368|Name=TCONS_00014368|organism=Clytia hemisphaerica|type=transcript|length=2398bp|location=Sequence derived from alignment at sc0000187:189005..191402+ (Clytia hemisphaerica)
tttttaacaTCTATTGTTCTATTCGAAGAGTgcgattttttttgattttc
ctaCATGTTATATAGCAAAATCGAACGTGCACATTCGAATCTGTATATAC
GTTGTGTAACTTCACTAGTTGACGCCAGGGACAATCATCTGGCCCTGGAA
CgcagaaatttcattttaattaagTGGTAATTAAAAAGCATACAGAAAGA
GGTAGGGAACAAACACACaaaattttaatgtttaatcCGTTTAAAAACCT
GCCGAAGGAAGTTTAGTAAAACAAGAAAGATTGGAAAAGTTATCGAATCG
TGAAATTGGTTGATGAGTTTGCGCACATACAGGATAGTTTAAGTTCAACT
GACCGTGTAAATTGTTTTTGATCTTTCACTCGAGCGATTCTTCCTTTCAA
CTCGctaaagaaagaagaaagaaaaattttgtctTGAACTTTCCCAGGTA
ATAActcttttttaatgtttttattgtatttttattgACTTTTCATTGTC
TATTGTCACTTTCATATCAACACGTCGGATTGACATAGTTTTGATATTAT
CATGAATTAGTTTTTTCGCAATGTCAGCATTTTGGGCATTGGTCTTTTaa
tctttattttgaatttacaaGATCATTTTATAGCAGGTACAACAAAACTA
ATTCAACTTTTTAAGAATCGTTTAATAACTTCACGAGACTTAGACCAGAG
AGTACCAAATATTCTTGAGATCCTCAAAAGCTCTGTCAAATTCATTACCA
AAGAGATGACTTGATTTTATGGTTttattggatcgaaatatcttaAACAT
TCATttgttcaaattatttttagtcTTGGTTATAACATAACTCTGGGGAG
TTTTTTGGAAAGATTGCAATGCACTTATACAAGTTGATTTGCCTTTCGGC
AATCGTTTTGGCAATCAATGCTGATAACACACTGTCCAGTAAGTTGACGG
TTTAATTTTTTTCGATcgaattttcatgattttaaattttccaactTTTG
TATGAAGTTTTCTTTCCAGAAGGTTTTTGTAGCTTTACAAAGACATCATC
AACTATCAGGATATGTATTTGAAATTCCAAATATTTCCAATATCTTTCAA
GCTGATATGACCCCTGtaaaaagaagattttaaagAGACTTaagttaatt
ttttgaatttgatcaatttttgaAGAAGAGATTAAGGTTGAATAAAGTac
taaaatatttctttctcgCTCATTCAGGTATCTACAGACCAAAGAGAGGC
GCTGGCTGTCTCTTAGGATGTTCTGCATCATGCGCACCTAGATGTTTACC
AAGTTGTTGtgcaccacctccaccaccaccacctccaccaccagcATGCC
CTGCTTCATGTGCCACCGCATGCACACCAGCCTGTCCACAAATCTGTTGT
GTTCCAGCTcttccaccaccaccaccaggTCCACCAGGACCCGTCGGCCC
AGTCGGAGCTATCGGACCACAAGGACCAAACGGACCTCCAGGGCCACCAG
GACCACCTGGACCACCAGGTCTTGCAGGACCTGCAGGACCACCAGGACTA
CCACAACCACCACCATTACCTTGTCCAAAACAATGTTACACAGTGTGCAC
ACCAACTTGTCCAAACTATTGTTGCCCAGCCgccccaccaccaccaccac
cgccATGCCCACCCGTCTGCTCAGTAGCCTGTGTTCAAGCTTGTCCACCA
GCCTGCTGTCCAAGTAAACGATCAGACATTTCAAAAGCTGAAGATAAACC
AATTATTATCATCGAGCGAAAACGATTataaactaaaaactaaaaagatG
TAGCCTTGGAAACTTGGCTTGCAACCATCTCTCTTAGACTCTGGAAAATC
TACACATTGTTTAAAATATGATggtaattttcttaaattttaggtgacaa
tattttaacaaattttctttattttgacgaCCTAAGCTAGGAGATGAGCT
TTATAACACCAACAATCTTATATCATCGAGGGTGGGGGActttatcttct
tttttatatCAACAGTTATAAGGGCCGCTGggccgttggaaagataatct
aAAGATTTCTTTCTAGCAAAAAGGCCCAGCTTTGTATGCCAAGATAGTTA
TCGTAAAGAATCCAACTCTTTCTAAGACGTATAACGAGCTTGAGAACTTT
TCGAAATTTAAGTTTTTGTATTCGTTTGTGAATTTCATGAAAATTCGTTT
GGAATTGCGATgtggaaaaacttttatttctctatttttgatatataaat
agtgagtatgtaattttttgagataaaaaaagTATTAGAAAAACCACAGA
AACAAACTAACGCAAATTCTCCATTAATTAATGTTTTTAACTGTACGCTT
ATTTGGCTTTGATAACTACAAAATATGAATAGAGCATCAGAATATGTT Coding sequence (CDS) from alignment at sc0000187:189005..191402+ >TCONS_00014368 ID=TCONS_00014368|Name=TCONS_00014368|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at sc0000187:189005..191402+ (Clytia hemisphaerica)
ATGCACTTATACAAGTTGATTTGCCTTTCGGCAATCGTTTTGGCAATCAA
TGCTGATAACACACTGTCCAGTATCTACAGACCAAAGAGAGGCGCTGGCT
GTCTCTTAGGATGTTCTGCATCATGCGCACCTAGATGTTTACCAAGTTGT
TGtgcaccacctccaccaccaccacctccaccaccagcATGCCCTGCTTC
ATGTGCCACCGCATGCACACCAGCCTGTCCACAAATCTGTTGTGTTCCAG
CTcttccaccaccaccaccaggTCCACCAGGACCCGTCGGCCCAGTCGGA
GCTATCGGACCACAAGGACCAAACGGACCTCCAGGGCCACCAGGACCACC
TGGACCACCAGGTCTTGCAGGACCTGCAGGACCACCAGGACTACCACAAC
CACCACCATTACCTTGTCCAAAACAATGTTACACAGTGTGCACACCAACT
TGTCCAAACTATTGTTGCCCAGCCgccccaccaccaccaccaccgccATG
CCCACCCGTCTGCTCAGTAGCCTGTGTTCAAGCTTGTCCACCAGCCTGCT
GTCCAAGTAAACGATCAGACATTTCAAAAGCTGAAGATAAACCAATTATT
ATCATCGAGCGAAAACGATTataaATGCACTTATACAAGTTGATTTGCCT
TTCGGCAATCGTTTTGGCAATCAATGCTGATAACACACTGTCCAGTATCT
ACAGACCAAAGAGAGGCGCTGGCTGTCTCTTAGGATGTTCTGCATCATGC
GCACCTAGATGTTTACCAAGTTGTTGtgcaccacctccaccaccaccacc
tccaccaccagcATGCCCTGCTTCATGTGCCACCGCATGCACACCAGCCT
GTCCACAAATCTGTTGTGTTCCAGCTcttccaccaccaccaccaggTCCA
CCAGGACCCGTCGGCCCAGTCGGAGCTATCGGACCACAAGGACCAAACGG
ACCTCCAGGGCCACCAGGACCACCTGGACCACCAGGTCTTGCAGGACCTG
CAGGACCACCAGGACTACCACAACCACCACCATTACCTTGTCCAAAACAA
TGTTACACAGTGTGCACACCAACTTGTCCAAACTATTGTTGCCCAGCCgc
cccaccaccaccaccaccgccATGCCCACCCGTCTGCTCAGTAGCCTGTG
TTCAAGCTTGTCCACCAGCCTGCTGTCCAAGTAAACGATCAGACATTTCA
AAAGCTGAAGATAAACCAATTATTATCATCGAGCGAAAACGATTataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014368-exon-sc0000187-1491911889:189005..189451 | TCONS_00014368-exon-sc0000187-1491911889:189005..189451 | Clytia hemisphaerica | exon |
| TCONS_00014368-exon-sc0000187-1510915933:189005..189451 | TCONS_00014368-exon-sc0000187-1510915933:189005..189451 | Clytia hemisphaerica | exon |
| TCONS_00014368-exon-sc0000187-1575043694:189005..189451 | TCONS_00014368-exon-sc0000187-1575043694:189005..189451 | Clytia hemisphaerica | exon |
| TCONS_00014368-exon-sc0000187-1491911889:189828..189942 | TCONS_00014368-exon-sc0000187-1491911889:189828..189942 | Clytia hemisphaerica | exon |
| TCONS_00014368-exon-sc0000187-1510915933:189828..189942 | TCONS_00014368-exon-sc0000187-1510915933:189828..189942 | Clytia hemisphaerica | exon |
| TCONS_00014368-exon-sc0000187-1575043694:189828..189942 | TCONS_00014368-exon-sc0000187-1575043694:189828..189942 | Clytia hemisphaerica | exon |
| TCONS_00014368-exon-sc0000187-1491911889:190232..191402 | TCONS_00014368-exon-sc0000187-1491911889:190232..191402 | Clytia hemisphaerica | exon |
| TCONS_00014368-exon-sc0000187-1510915933:190232..191402 | TCONS_00014368-exon-sc0000187-1510915933:190232..191402 | Clytia hemisphaerica | exon |
| TCONS_00014368-exon-sc0000187-1575043694:190232..191402 | TCONS_00014368-exon-sc0000187-1575043694:190232..191402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000187 | supercontig | sc0000187:189005..191402 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR008160 | Collagen |
Blast
The following BLAST results are available for this feature:
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