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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014361 ID=TCONS_00014361|Name=TCONS_00014361|organism=Clytia hemisphaerica|type=transcript|length=636bp
cagaataaacaatattctaaaatatttaaacaaaaattgaaaaggaaatA
AAGCCAAGNAATAAACAATATTATAAaatatttaaacaaaaattgaaaag
gaaatAAAGCCAAGTATGTCATATCACCCACCAAATCTCGGCTCTGATCT
GCGGAACCGACAAAACATTTTACAAGATCTTcagcaacaaaaacaacaat
taCTTCAAGGTGGTTCCTCATCAACCACCATGCTACCGCCCTCCTCATCG
GGCGCCACAATGACACACCAAATGCTTGGTCGTCCACCTGTTAAGCATGA
CATGACAACAATGCCATTGAATAGACGTGGTGCTTTAGAATATGCTTCTG
CACATTCTTCAGGCTATTTCATTGCATCAGATTCGACAGTTGGAAATCCT
ATACTTCCTGTCATCCCAAGAGTTGATGACAAAGTTGCATGAGAGGTATC
GAAACACCGAAAATGAAGAACTGCAAAAATTAAAAGCATCTCTTTGAGCC
CCATATTGCTTTGACTTCACATTCGGTCCCAAATTTGAACAATGAACGAA
ATGATACAAAGCAAAGGACTTCACAGATTTAAAGAACTTAACAAATAATT
TCGATATTATTGGAGACCCTTGGAAATCACTTGATA Run BLAST on NCBI protein sequence of TCONS_00014361-protein >TCONS_00014361-protein ID=TCONS_00014361-protein|Name=TCONS_00014361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MSYHPPNLGSDLRNRQNILQDLQQQKQQLLQGGSSSTTMLPPSSSGATMT
HQMLGRPPVKHDMTTMPLNRRGALEYASAHSSGYFIASDSTVGNPILPVI
PRVDDKVA Run BLAST on NCBI transcript from alignment at sc0000187:52373..53298+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014361 ID=TCONS_00014361|Name=TCONS_00014361|organism=Clytia hemisphaerica|type=transcript|length=926bp|location=Sequence derived from alignment at sc0000187:52373..53298+ (Clytia hemisphaerica)
cagaataaacaatattctaaaatatttaaacaaaaattgaaaaggaaatA
AAGCCAAGNAATAAACAATATTATAAaatatttaaacaaaaattgaaaag
gaaatAAAGCCAAGTATGTCATATCACCCACCAAATCTCGGCTCTGATCT
GCGGAACCGACAAAACATTTTACAAGATCTTcagcaacaaaaacaacaat
taCTTCAAGGTGGTTCCTCATCAACCACCATGCTACCGCCCTCCTCATCG
GGCGCCACAATGACACACCAAATGCTTGGTCGTCCACCTGTTAAGCATGA
CATGACAACAATGCCATTGAATAGACGTGGTGCTTTAGAATATGCTTCTG
GTAAGTTTATAAGTCATTTGTATGTTAACTCTTGATACAAAGatagtttg
aaattttaagcTCTAATATTAAGATTATGTTGAAATCGGTGGTGAATCCT
TGTAATCGtttaaatttatgtttttatttgaaaaccttactttttgaaaa
ttttaagtgCATGCCGAATTTTCGGCAAGACATTTAACAGAAGAAACTTT
TCTACGAAGATATCGCAAGAAACATATAAAAGacttttattattattcta
CTTTATtgtcaatatgaaaaaatattttcttcgttTCCAGCACATTCTTC
AGGCTATTTCATTGCATCAGATTCGACAGTTGGAAATCCTATACTTCCTG
TCATCCCAAGAGTTGATGACAAAGTTGCATGAGAGGTATCGAAACACCGA
AAATGAAGAACTGCAAAAATTAAAAGCATCTCTTTGAGCCCCATATTGCT
TTGACTTCACATTCGGTCCCAAATTTGAACAATGAACGAAATGATACAAA
GCAAAGGACTTCACAGATTTAAAGAACTTAACAAATAATTTCGATATTAT
TGGAGACCCTTGGAAATCACTTGATA Coding sequence (CDS) from alignment at sc0000187:52373..53298+ >TCONS_00014361 ID=TCONS_00014361|Name=TCONS_00014361|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0000187:52373..53298+ (Clytia hemisphaerica)
ATGTCATATCACCCACCAAATCTCGGCTCTGATCTGCGGAACCGACAAAA
CATTTTACAAGATCTTcagcaacaaaaacaacaattaCTTCAAGGTGGTT
CCTCATCAACCACCATGCTACCGCCCTCCTCATCGGGCGCCACAATGACA
CACCAAATGCTTGGTCGTCCACCTGTTAAGCATGACATGACAACAATGCC
ATTGAATAGACGTGGTGCTTTAGAATATGCTTCTGCACATTCTTCAGGCT
ATTTCATTGCATCAGATTCGACAGTTGGAAATCCTATACTTCCTGTCATC
CCAAGAGTTGATGACAAAGTTGCATGAATGTCATATCACCCACCAAATCT
CGGCTCTGATCTGCGGAACCGACAAAACATTTTACAAGATCTTcagcaac
aaaaacaacaattaCTTCAAGGTGGTTCCTCATCAACCACCATGCTACCG
CCCTCCTCATCGGGCGCCACAATGACACACCAAATGCTTGGTCGTCCACC
TGTTAAGCATGACATGACAACAATGCCATTGAATAGACGTGGTGCTTTAG
AATATGCTTCTGCACATTCTTCAGGCTATTTCATTGCATCAGATTCGACA
GTTGGAAATCCTATACTTCCTGTCATCCCAAGAGTTGATGACAAAGTTGC
ATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014361-exon-sc0000187-1491911889:52373..52722 | TCONS_00014361-exon-sc0000187-1491911889:52373..52722 | Clytia hemisphaerica | exon |
| TCONS_00014361-exon-sc0000187-1510915933:52373..52722 | TCONS_00014361-exon-sc0000187-1510915933:52373..52722 | Clytia hemisphaerica | exon |
| TCONS_00014361-exon-sc0000187-1575043694:52373..52722 | TCONS_00014361-exon-sc0000187-1575043694:52373..52722 | Clytia hemisphaerica | exon |
| TCONS_00014361-exon-sc0000187-1491911889:53013..53298 | TCONS_00014361-exon-sc0000187-1491911889:53013..53298 | Clytia hemisphaerica | exon |
| TCONS_00014361-exon-sc0000187-1510915933:53013..53298 | TCONS_00014361-exon-sc0000187-1510915933:53013..53298 | Clytia hemisphaerica | exon |
| TCONS_00014361-exon-sc0000187-1575043694:53013..53298 | TCONS_00014361-exon-sc0000187-1575043694:53013..53298 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000187 | supercontig | sc0000187:52373..53298 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR031821 | SOSSC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0006974 | cellular response to DNA damage stimulus |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0070876 | SOSS complex |
| GO:0005634 | nucleus |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006974 |
cellular response to DNA damage stimulus |
| biological_process |
GO:0006281 |
DNA repair |
| cellular_component |
GO:0005634 |
nucleus |
| cellular_component |
GO:0070876 |
SOSS complex |
Blast
The following BLAST results are available for this feature:
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