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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014349 ID=TCONS_00014349|Name=TCONS_00014349|organism=Clytia hemisphaerica|type=transcript|length=3979bp
AATCGACTCACTGATTGTGATATCCTCAAAGTCTTTTGTtgtgattttgt
ttttcaaagttcTACTTCCTCTCAGGCAGAGAACGGTGGATCTTATAAGG
GCAAGtcctagctttgtccgcaaccAGTTGAGGGTGACAGACAGTAGTTC
ATCACGTTTGTCTGATAATAGGATTGCAAGagcttttttgaaatgactGG
CTTCCCTTCCATAACCTCCGTTAATGGTGGATATTAGAGGAGTAAACGAT
CCCTGGTCAACCTCGATGATCCTTCTGTTGTAATGGTGTTTCTTCTCTCT
CGTTGGCTTCAAAAGCGCTTCTGAGGCTCTTCCTAGAGTACCGTTGAGCA
TAGGCGTTGAAAACCCGTATGTCAAAAAATGCTCGTTGGTCTCTAGACCA
GAACCCCATTGCACTTATATCAGCCCTTGCTCCTGGTTCTTGGATCGTTC
CTGATGGTAGTTCCTCTCCTGTGATGGCTTCGAGAGGGGGTTCGATCATG
ACATCTTTCTTTACGGTGCTGACTATATTGGCAATAGTATCACGTAACTT
GTTGTGTCTCTGGTAGACGAATCCTCCTTTGGCACACGATAGGGCATGAT
CTACTGAGTATGGTTTTCCACAAGCGCAGTGTGTTGGAAGGTGCTTAAGT
GGCCAGCGGTAACGAACAGAAATGGCGTcaaaaaattcccttttacTCAG
ATCTGAGTTTTCAGATTTTAAGGGGAGGGCGGTCAACCAATTCGATGCAC
CGTTAGCTTGAGCAAGTTCATTTGCTTTCAGTTCATCAGTGTTCATTCGT
GATCGTAAATCCTCTACTTTCTGTTTATTCCGGACCTCTCTctcttttga
aagtttttactTCATATTTTGTTCATTACTTTGGTTCAAATCTCTTCTTT
GATCAATAATATTGTTTTTCAGGGTTTCACTTAAACGTTCAGAGTTTTGG
TGTTCTAGTTTTACAATTTCTGATAGTATTGGAATACCTAGGCCTCCCAT
TTTTACTGGTAAGGCGAGCAGTTCTCTCTCCAACTCACTACAACGATGTC
CTTCTGTGATGGCAGGAATAAACAAATCATCAATAACATTATCGACCGGA
CCTAGTAGGTCGGAAATGTCACTCATTACTCGGAGATGGTAGTTGAACTT
GTGCACAAATCATCCAACGAACGCAGCATAGGCACATTGGGGTTGCGATT
TAGCGATTTTACTTAGCTCCGAGATTTGATTCACCCAGCTGGAAACTTTG
GTCTTAAAATATTCTGTTTTGGATTCCTCTGTCCCGTTTATTCCTCCTAA
ATATTTTCGACCAGCACTAGTAATTTTGATGTTAGTgccttgaaaaagtt
ttttagccTCCTCAACTTGGTCCTCCTTTACAATAAGCCAGGATTTTGAT
GCTTTAGGAAAATATCCGAGACTGGGTCCAATTCTGTTGATTCTCGTTCC
ACCATTTTAACAGATTAATCAGTTTTCCTCCTCCGGCAAGGTCATCAGCA
AAGGCAGCTTCTTTTACTTCTGCTGAAATAAGGTCCTCTTTTAGTAAATC
AAGGAGAGGCATTAAACCAATGGCATAAGTTGGCATTGACATGGGGTCTC
CCTGTGTAGTTCCTTCAGAGGATGAAAGTTCAGAGCCTCCCATTACAAAA
AGTCTAGACTTACGTTGATAGCAATTTGAGACATAGGTGGATGATGCTGG
GCATAATCGTTTGATGTTGTGTAGAAAAGCATTTCGGTTTAGGGTATTAA
AGGCATTTGAAGCGTCTACAAGCAGTATGGCATCTGTACTTTGTTCGTTA
AAGATCATGGCATGTACAGCTGCCTCACTCCCAGCCTGCTGGCCTGCACA
AACTTGCAGCGAACCAGCAGCATTCATTATGTCTCCTTTAATCACATGAA
TTAGAGTCTTTCCAAAAATACGCCTTAGCACCTCTCCTATACCTATTGGT
CTAACACCAGGGTTCTTGTCAAGGGGCACAAGTCTACAAGCAAGAAATGC
TTCTTTGTCCCTTTCCTCCGAGTTTGGGTCTAAAGGCGTTTGACAAAGGA
TTTTCAACATGTTAGCCAGCGAAGTTCGAAGATCAGAACCCACGGTACCG
TAATTCCTCGAGGCAAGGATTCTTCGCCAGCCATCAGCATCAAGGGCGGA
GGGACCAGCAGATCCTCTTGTTTTGAGTGCAGCGGACAAGATTGCGGTGC
CGCCAATCGATTCATATACGATGGGGTCAATATGAGCAGGTTTGCCAGTT
AACAAAATGTCATTCTGTGCATCAGATCCTTCAGGGTGTAGCTCTTTGAG
GGATCTGAGAGTGTCTTCATTTAAACCAAGAATACCACCATTAGGGGCTT
GTTCAAGAACACGAAGAGCTGCTTTAATGTTGCCCCTAAGCATGTGCTTT
GTAAACTCAGCTGTAGAGGATTTAGTCGACTGTCTTTGAAATTCATTTAG
ACGATTTTGAATTTCTCTTGCTTCATTTAACagtttttcaaattctcctt
cTTGCCACCATTGTAGCCTTCTCATCAGAGTTAAAGAGTGTTATTTACTG
GTTGATCTAGCATGTGGTTTCTGGAGTAGAAGGTTTGGCATACACATAAG
CATTTTTATGGACACCTTTGAAAAGTTTGCCGAGTTTGTGTTCCAAAAAT
CAATCAATTTCATCATTTCCAGAATGAAAGTCTTTCCAGCTTTACCGGAA
GGTAGAAGGAATAGATTTTTCCGAAAGAAAACAATGTCATTATAGCAAGT
GTTCATAAAATCAAGGAGTTGGTCACAGGAGTGGGGACCCCATATGGGTT
TAGGCGGTGGTGGGTGATTTGATGTAGCGTGGGTTGCTGCTGGTTGAGTC
GGGTTTGCATTGGATATACAGGGAGGAGCGGTATTGAGAGCTGATTGGTG
TGCAATTGATCTGTTGAGGAGTGCTTATCGGTTGGGTTGAGGTTGGGTGG
GGAGTGGTGGCAGTTGAATTGGGTGATGATGGCGGTTTATCAGTAGTCGG
TGAGGGTTTGTCTTTAAGATGGTGGTTTCTGTGATTGGTTCTACCTGACT
TGGTGGTAAAAGTCCTGTCGCACATGTCGCAAGGGTAGCTTTCGGTTACT
GGGGCTCTTTGTGATTGGCTGGGTTGTGTTAATGGTAAAATTTTCTCAGG
ATTATTGTCTAAAGATTTATTTGGATTGATACTGTTTTTGTTGGATCTGT
GTTGAGTATGGAGGGTATTGAAGAAACTCTCTCCTTGATTCAAGCGTTTT
TGGCAGAGGAGAGGGTCCTTGGTGGTTGGTATCAGAAGAGTGGTTGGTCT
GTTGGCTGTCTCAAGCAGTGGTGGGGGTGGAGGAGAGTATCCGTAAGCTG
CATTTGATGGGGTCTGCTGAACCATCTGTGTGGTgagttttttgttgttt
gtggcAAGCATTTTTTTTGATGAGCGGCTGAAGAAGTAGGAGGAAGCATG
ATTGAttccaaaatcaacttttatttcgtCTGACGATATGTTGTTTTTGT
AATTCTTCTACAATCCGTGTTTATACTACACAGCTAACATCCGCCATAAT
TGATATCGGCTTAgtggtgggttcgaaccccggtcgggtcgatatttcaa
ggtTTAAGATACTCCCgcccgtcgatgatactcctgACCATCAAGAagag
atactcccgaccgtcgatgatactcccgaccgtcaagATGAGAAATTTGC
GGTGCAATCTGCACGTACTCGATATTCTCCAAAATGAAATAGGCTGTTGC
TCTAATCGATTCAACCTTATTAATTTAATTTACCTTCGTTTAATTATTTT
AATTGTAATTCATTGTTAATAATTtatgataatttgataaaattttgtaa
ttttttttgttgagaTTTTTAGGATTCTATATTTAAGATAGCAACTCTTG
TAAAGTCACACTGATTGGCTGACTTCACAAAATAGTGTAAAATTAAATCT
AGTTACGATTTGGTTTATCTACATATTCA Run BLAST on NCBI protein sequence of TCONS_00014349-protein >TCONS_00014349-protein ID=TCONS_00014349-protein|Name=TCONS_00014349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MRRLQWWQEGEFEKLLNEAREIQNRLNEFQRQSTKSSTAEFTKHMLRGNI
KAALRVLEQAPNGGILGLNEDTLRSLKELHPEGSDAQNDILLTGKPAHID
PIVYESIGGTAILSAALKTRGSAGPSALDADGWRRILASRNYGTVGSDLR
TSLANMLKILCQTPLDPNSEERDKEAFLACRLVPLDKNPGVRPIGIGEVL
RRIFGKTLIHVIKGDIMNAAGSLQVCAGQQAGSEAAVHAMIFNEQSTDAI
LLVDASNAFNTLNRNAFLHNIKRLCPASSTYVSNCYQRKSRLFVMGGSEL
SSSEGTTQGDPMSMPTYAIGLMPLLDLLKEDLISAEVKEAAFADDLAGGG
KLINLLKWWNENQQNWTQSRIFS Run BLAST on NCBI transcript from alignment at sc0000185:365816..369794 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014349 ID=TCONS_00014349|Name=TCONS_00014349|organism=Clytia hemisphaerica|type=transcript|length=3979bp|location=Sequence derived from alignment at sc0000185:365816..369794 (Clytia hemisphaerica)
TGAATATGTAGATAAACCAAATCGTAACTAGATTTAATTTTACACTATTT
TGTGAAGTCAGCCAATCAGTGTGACTTTACAAGAGTTGCTATCTTAAATA
TAGAATCCTAAAAAtctcaacaaaaaaaattacaaaattttatcaaatta
tcataAATTATTAACAATGAATTACAATTAAAATAATTAAACGAAGGTAA
ATTAAATTAATAAGGTTGAATCGATTAGAGCAACAGCCTATTTCATTTTG
GAGAATATCGAGTACGTGCAGATTGCACCGCAAATTTCTCATcttgacgg
tcgggagtatcatcgacggtcgggagtatctctTCTTGATGGTcaggagt
atcatcgacgggcGGGAGTATCTTAAaccttgaaatatcgacccgaccgg
ggttcgaacccaccacTAAGCCGATATCAATTATGGCGGATGTTAGCTGT
GTAGTATAAACACGGATTGTAGAAGAATTACAAAAACAACATATCGTCAG
acgaaataaaagttgattttggaaTCAATCATGCTTCCTCCTACTTCTTC
AGCCGCTCATCAAAAAAAATGCTTgccacaaacaacaaaaaactcACCAC
ACAGATGGTTCAGCAGACCCCATCAAATGCAGCTTACGGATACTCTCCTC
CACCCCCACCACTGCTTGAGACAGCCAACAGACCAACCACTCTTCTGATA
CCAACCACCAAGGACCCTCTCCTCTGCCAAAAACGCTTGAATCAAGGAGA
GAGTTTCTTCAATACCCTCCATACTCAACACAGATCCAACAAAAACAGTA
TCAATCCAAATAAATCTTTAGACAATAATCCTGAGAAAATTTTACCATTA
ACACAACCCAGCCAATCACAAAGAGCCCCAGTAACCGAAAGCTACCCTTG
CGACATGTGCGACAGGACTTTTACCACCAAGTCAGGTAGAACCAATCACA
GAAACCACCATCTTAAAGACAAACCCTCACCGACTACTGATAAACCGCCA
TCATCACCCAATTCAACTGCCACCACTCCCCACCCAACCTCAACCCAACC
GATAAGCACTCCTCAACAGATCAATTGCACACCAATCAGCTCTCAATACC
GCTCCTCCCTGTATATCCAATGCAAACCCGACTCAACCAGCAGCAACCCA
CGCTACATCAAATCACCCACCACCGCCTAAACCCATATGGGGTCCCCACT
CCTGTGACCAACTCCTTGATTTTATGAACACTTGCTATAATGACATTGTT
TTCTTTCGGAAAAATCTATTCCTTCTACCTTCCGGTAAAGCTGGAAAGAC
TTTCATTCTGGAAATGATGAAATTGATTGATTTTTGGAACACAAACTCGG
CAAACTTTTCAAAGGTGTCCATAAAAATGCTTATGTGTATGCCAAACCTT
CTACTCCAGAAACCACATGCTAGATCAACCAGTAAATAACACTCTTTAAC
TCTGATGAGAAGGCTACAATGGTGGCAAgaaggagaatttgaaaaactGT
TAAATGAAGCAAGAGAAATTCAAAATCGTCTAAATGAATTTCAAAGACAG
TCGACTAAATCCTCTACAGCTGAGTTTACAAAGCACATGCTTAGGGGCAA
CATTAAAGCAGCTCTTCGTGTTCTTGAACAAGCCCCTAATGGTGGTATTC
TTGGTTTAAATGAAGACACTCTCAGATCCCTCAAAGAGCTACACCCTGAA
GGATCTGATGCACAGAATGACATTTTGTTAACTGGCAAACCTGCTCATAT
TGACCCCATCGTATATGAATCGATTGGCGGCACCGCAATCTTGTCCGCTG
CACTCAAAACAAGAGGATCTGCTGGTCCCTCCGCCCTTGATGCTGATGGC
TGGCGAAGAATCCTTGCCTCGAGGAATTACGGTACCGTGGGTTCTGATCT
TCGAACTTCGCTGGCTAACATGTTGAAAATCCTTTGTCAAACGCCTTTAG
ACCCAAACTCGGAGGAAAGGGACAAAGAAGCATTTCTTGCTTGTAGACTT
GTGCCCCTTGACAAGAACCCTGGTGTTAGACCAATAGGTATAGGAGAGGT
GCTAAGGCGTATTTTTGGAAAGACTCTAATTCATGTGATTAAAGGAGACA
TAATGAATGCTGCTGGTTCGCTGCAAGTTTGTGCAGGCCAGCAGGCTGGG
AGTGAGGCAGCTGTACATGCCATGATCTTTAACGAACAAAGTACAGATGC
CATACTGCTTGTAGACGCTTCAAATGCCTTTAATACCCTAAACCGAAATG
CTTTTCTACACAACATCAAACGATTATGCCCAGCATCATCCACCTATGTC
TCAAATTGCTATCAACGTAAGTCTAGACTTTTTGTAATGGGAGGCTCTGA
ACTTTCATCCTCTGAAGGAACTACACAGGGAGACCCCATGTCAATGCCAA
CTTATGCCATTGGTTTAATGCCTCTCCTTGATTTACTAAAAGAGGACCTT
ATTTCAGCAGAAGTAAAAGAAGCTGCCTTTGCTGATGACCTTGCCGGAGG
AGGAAAACTGATTAATCTGTTAAAATGGTGGAACGAGAATCAACAGAATT
GGACCCAGTCTCGGATATTTTCCTAAAGCATCAAAATCCTGGCTTATTGT
AAAGGAGGACCAAGTTGAGGAggctaaaaaactttttcaaggcACTAACA
TCAAAATTACTAGTGCTGGTCGAAAATATTTAGGAGGAATAAACGGGACA
GAGGAATCCAAAACAGAATATTTTAAGACCAAAGTTTCCAGCTGGGTGAA
TCAAATCTCGGAGCTAAGTAAAATCGCTAAATCGCAACCCCAATGTGCCT
ATGCTGCGTTCGTTGGATGATTTGTGCACAAGTTCAACTACCATCTCCGA
GTAATGAGTGACATTTCCGACCTACTAGGTCCGGTCGATAATGTTATTGA
TGATTTGTTTATTCCTGCCATCACAGAAGGACATCGTTGTAGTGAGTTGG
AGAGAGAACTGCTCGCCTTACCAGTAAAAATGGGAGGCCTAGGTATTCCA
ATACTATCAGAAATTGTAAAACTAGAACACCAAAACTCTGAACGTTTAAG
TGAAACCCTGAAAAACAATATTATTGATCAAAGAAGAGATTTGAACCAAA
GTAATGAACAAAATATGAagtaaaaactttcaaaagagAGAGAGGTCCGG
AATAAACAGAAAGTAGAGGATTTACGATCACGAATGAACACTGATGAACT
GAAAGCAAATGAACTTGCTCAAGCTAACGGTGCATCGAATTGGTTGACCG
CCCTCCCCTTAAAATCTGAAAACTCAGATCTGAgtaaaagggaatttttt
gACGCCATTTCTGTTCGTTACCGCTGGCCACTTAAGCACCTTCCAACACA
CTGCGCTTGTGGAAAACCATACTCAGTAGATCATGCCCTATCGTGTGCCA
AAGGAGGATTCGTCTACCAGAGACACAACAAGTTACGTGATACTATTGCC
AATATAGTCAGCACCGTAAAGAAAGATGTCATGATCGAACCCCCTCTCGA
AGCCATCACAGGAGAGGAACTACCATCAGGAACGATCCAAGAACCAGGAG
CAAGGGCTGATATAAGTGCAATGGGGTTCTGGTCTAGAGACCAACGAGCA
TTTTTTGACATACGGGTTTTCAACGCCTATGCTCAACGGTACTCTAGGAA
GAGCCTCAGAAGCGCTTTTGAAGCCAACGAGAGAGAAGAAACACCATTAC
AACAGAAGGATCATCGAGGTTGACCAGGGATCGTTTACTCCTCTAATATC
CACCATTAACGGAGGTTATGGAAGGGAAGCCagtcatttcaaaaaagctC
TTGCAATCCTATTATCAGACAAACGTGATGAACTACTGTCTGTCACCCTC
AACTggttgcggacaaagctaggaCTTGCCCTTATAAGATCCACCGTTCT
CTGCCTGAGAGGAAGTAgaactttgaaaaacaaaatcacaACAAAAGACT
TTGAGGATATCACAATCAGTGAGTCGATT Coding sequence (CDS) from alignment at sc0000185:365816..369794 >TCONS_00014349 ID=TCONS_00014349|Name=TCONS_00014349|organism=Clytia hemisphaerica|type=CDS|length=1122bp|location=Sequence derived from alignment at sc0000185:365816..369794 (Clytia hemisphaerica)
ATGAGAAGGCTACAATGGTGGCAAgaaggagaatttgaaaaactGTTAAA
TGAAGCAAGAGAAATTCAAAATCGTCTAAATGAATTTCAAAGACAGTCGA
CTAAATCCTCTACAGCTGAGTTTACAAAGCACATGCTTAGGGGCAACATT
AAAGCAGCTCTTCGTGTTCTTGAACAAGCCCCTAATGGTGGTATTCTTGG
TTTAAATGAAGACACTCTCAGATCCCTCAAAGAGCTACACCCTGAAGGAT
CTGATGCACAGAATGACATTTTGTTAACTGGCAAACCTGCTCATATTGAC
CCCATCGTATATGAATCGATTGGCGGCACCGCAATCTTGTCCGCTGCACT
CAAAACAAGAGGATCTGCTGGTCCCTCCGCCCTTGATGCTGATGGCTGGC
GAAGAATCCTTGCCTCGAGGAATTACGGTACCGTGGGTTCTGATCTTCGA
ACTTCGCTGGCTAACATGTTGAAAATCCTTTGTCAAACGCCTTTAGACCC
AAACTCGGAGGAAAGGGACAAAGAAGCATTTCTTGCTTGTAGACTTGTGC
CCCTTGACAAGAACCCTGGTGTTAGACCAATAGGTATAGGAGAGGTGCTA
AGGCGTATTTTTGGAAAGACTCTAATTCATGTGATTAAAGGAGACATAAT
GAATGCTGCTGGTTCGCTGCAAGTTTGTGCAGGCCAGCAGGCTGGGAGTG
AGGCAGCTGTACATGCCATGATCTTTAACGAACAAAGTACAGATGCCATA
CTGCTTGTAGACGCTTCAAATGCCTTTAATACCCTAAACCGAAATGCTTT
TCTACACAACATCAAACGATTATGCCCAGCATCATCCACCTATGTCTCAA
ATTGCTATCAACGTAAGTCTAGACTTTTTGTAATGGGAGGCTCTGAACTT
TCATCCTCTGAAGGAACTACACAGGGAGACCCCATGTCAATGCCAACTTA
TGCCATTGGTTTAATGCCTCTCCTTGATTTACTAAAAGAGGACCTTATTT
CAGCAGAAGTAAAAGAAGCTGCCTTTGCTGATGACCTTGCCGGAGGAGGA
AAACTGATTAATCTGTTAAAATGGTGGAACGAGAATCAACAGAATTGGAC
CCAGTCTCGGATATTTTCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014349-exon-sc0000185-1491911889:365816..369794 | TCONS_00014349-exon-sc0000185-1491911889:365816..369794 | Clytia hemisphaerica | exon |
| TCONS_00014349-exon-sc0000185-1510915933:365816..369794 | TCONS_00014349-exon-sc0000185-1510915933:365816..369794 | Clytia hemisphaerica | exon |
| TCONS_00014349-exon-sc0000185-1575043694:365816..369794 | TCONS_00014349-exon-sc0000185-1575043694:365816..369794 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000185 | supercontig | sc0000185:365816..369794 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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