TCONS_00014345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014345
Unique NameTCONS_00014345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014345 ID=TCONS_00014345|Name=TCONS_00014345|organism=Clytia hemisphaerica|type=transcript|length=741bp
ATCACAACGAAAGAAGCAGATAAAGATGAGCATCATGGACTGAAATTAGG
TTTCAACGAGAGAATAACCTCTCTAGAAAGGAAAGTCGAGAAGCTAATGA
ATAAAAACGACGTCAACAAAGAACGGAACAACAAACGATCTGAAACACAG
CTCAACAAtacagaaacaaaaaaacaatcatatgcagaagtcaccaaaaa
agatctaaaaaaacaagaggtgaccataaaaagtttcatcaaatcAGTGA
ACGAAGAGGAGCGCTAGCTCAAATCAACCAAGCAAGTGCAACATCATGGT
GCATGATTTAGGTGAAAACAAGCACGATAACGAAGAAGAGCAACGAGTTG
GTGACaaagattttatagaaaaaataatgaaacaaCAAATGGGTTTCGAT
GTGACGATAATCAAGGTAGAACGCATAGGTGCTCGTAAAGATGAAATATA
TACAAATGAACGATAGAAACCATTAAAAGTTACTCTCGAGAGTGAAGAAG
AAAGGATTCAAGGAAAGAACGCGAGATAATAAAACAATGGCAtcataaag
caaaagaaaaaacatcgaaataaaaagacaagagttatatatggaaagtg
agaggtagtccTAGGACTAAACTCTATTTAACGAAATTTACGACGGAAAC
AACATGATTGTAAGAAGAGTGGGTTAGAGGCGCAAGTGCCTAACTGTAAA
ACTCTATAAcagaattgacaaacgaatggaatgataagatc
Run BLAST on NCBI

transcript from alignment at sc0000185:201704..202444

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014345 ID=TCONS_00014345|Name=TCONS_00014345|organism=Clytia hemisphaerica|type=transcript|length=741bp|location=Sequence derived from alignment at sc0000185:201704..202444 (Clytia hemisphaerica)
gatcttatcattccattcgtttgtcaattctgTTATAGAGTTTTACAGTT
AGGCACTTGCGCCTCTAACCCACTCTTCTTACAATCATGTTGTTTCCGTC
GTAAATTTCGTTAAATAGAGTTTAGTCCTAggactacctctcactttcca
tatataactcttgtctttttatttcgatgttttttcttttgctttatgaT
GCCATTGTTTTATTATCTCGCGTTCTTTCCTTGAATCCTTTCTTCTTCAC
TCTCGAGAGTAACTTTTAATGGTTTCTATCGTTCATTTGTATATATTTCA
TCTTTACGAGCACCTATGCGTTCTACCTTGATTATCGTCACATCGAAACC
CATTTGttgtttcattattttttctataaaatctttGTCACCAACTCGTT
GCTCTTCTTCGTTATCGTGCTTGTTTTCACCTAAATCATGCACCATGATG
TTGCACTTGCTTGGTTGATTTGAGCTAGCGCTCCTCTTCGTTCACTgatt
tgatgaaactttttatggtcacctcttgtttttttagatcttttttggtg
acttctgcatatgattgtttttttgtttctgtaTTGTTGAGCTGTGTTTC
AGATCGTTTGTTGTTCCGTTCTTTGTTGACGTCGTTTTTATTCATTAGCT
TCTCGACTTTCCTTTCTAGAGAGGTTATTCTCTCGTTGAAACCTAATTTC
AGTCCATGATGCTCATCTTTATCTGCTTCTTTCGTTGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008025XLOC_008025Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014345-exon-sc0000185-1491911889:201704..202444TCONS_00014345-exon-sc0000185-1491911889:201704..202444Clytia hemisphaericaexon
TCONS_00014345-exon-sc0000185-1510915933:201704..202444TCONS_00014345-exon-sc0000185-1510915933:201704..202444Clytia hemisphaericaexon
TCONS_00014345-exon-sc0000185-1575043694:201704..202444TCONS_00014345-exon-sc0000185-1575043694:201704..202444Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:201704..202444 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.955567	1.03996	2.12417	0.63985	0.615411	0.284261	0.889875	0.675481	0.498863	0.388459	0.153295	0.479176	0.389355	0.892755	0.413671	0.348018	0	0.39081	0.276295	0.745184	0.592921	0.758141	0.452018	0.458767	1.24071	1.26494	0.877621	0.484588	0.344826	1.47569
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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