TCONS_00014305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014305
Unique NameTCONS_00014305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014305 ID=TCONS_00014305|Name=TCONS_00014305|organism=Clytia hemisphaerica|type=transcript|length=571bp
CATGGTTGGCAAGATTTAATTGAAACTGGCTTTCGAGATTTATTGACAGG
ATGGGTGTACAAGAAGAGAAAGAATCATCTTTTATATCCTGGCATTGTCA
TCAGAACTATCACATTGATCGTTGTAGTCGTCTCTTATCCTAAACTTGGA
TTGTATGGAGCAACTATGGGAATCTCAGCACTGGCAACTACAATATTTTC
TGGCAGTTTTACCCTGGTCATTATTTGCTTGTATGTTGGTCGAAAAGAAA
AGCTGAAAAAGGGGAAAGAATGTTTGGTCGACGAAGAGGGAGaGTTGTCC
AATGGTAACTCGTTGGAAAAAACAAAGAACGAGGAAATCGAACTGCTCTA
GTTACTTGATCCTGATCTCAATATTGACTTACACAAATGATTTTGGTTGA
ATCATAttaacaaaatttcaattttaaatacTGTACTGCAAAAACGATGa
atagtttgaaaaatataaattttgttatCAGTTATTTTTTTACCGCAACA
TGACATTGTATATACTTTTGCTTTTCTAAGCTGTAAATAGTTTTTAGATT
TATCTTTTCTACAGGTCTTCT
Run BLAST on NCBI

protein sequence of TCONS_00014305-protein

>TCONS_00014305-protein ID=TCONS_00014305-protein|Name=TCONS_00014305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
HGWQDLIETGFRDLLTGWVYKKRKNHLLYPGIVIRTITLIVVVVSYPKLG
LYGATMGISALATTIFSGSFTLVIICLYVGRKEKLKKGKECLVDEEGELS
NGNSLEKTKNEEIELL
Run BLAST on NCBI

transcript from alignment at sc0000185:228020..232738-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014305 ID=TCONS_00014305|Name=TCONS_00014305|organism=Clytia hemisphaerica|type=transcript|length=4719bp|location=Sequence derived from alignment at sc0000185:228020..232738- (Clytia hemisphaerica)
CATGGTTGGCAAGATTTAATTGAAAGTAATTATAAGTCAGTCGTTTTTAT
AAACAGTCCAACAGTGGAGGCAGTTCTTTCATTTTATGCAAACACCAAAC
AATTTCACTGCTGATAAATGTTGATGCTCTGAATACTATTTTATTGCAAA
CAACCTATTTTCGGTGTATCCTTGGTTTAATTAGTCACTAAGCCAAGAGA
ACAAAAGGTTTAATGAGCAATTTTCGACGTTAAATCTGGAATGTTAATAT
GAAGCGATTTTCTCGCCAAAACTTCTTTTTTCCGCCATCCGCCAAATTAA
ATTCCCGCAAAATTTAGTTTTTTCGTTCATCCGCCAAATTAAATTCCCAT
CAAAATTTCTTCCTTTAAGGGTAGATGCTTTTTTAGCACTTAAAATAGAA
TTATTTGTTTGGGCAGTTCTGTTTTGGTTTTTTTCTTAAAATGGGCGATT
TTTTTGGAAACTTGGTGAATTATTTACTTTTTACGTCTCATTTCAGCTGG
CTTTCGAGATTTATTGACAGGATGGGTGTACAAGAAGAGAAAGAATCATC
TTTTATATCCTGGCATTGTCATCAGAACTATCACATTGATCGTTGTAGTC
GTCTCTTATCCTAAACTTGGGTAAGATTCAATCCCTTTTGTGTCCAGAAA
ACTTCGGCTATTTTTACCGGTAAATTGCCAACTATTCCCTCGCTAAAAGT
TTTACAAAAATATCAAATTTTTGCTTGATGTATGTATTGCATGCTACATA
TAGATCCTAACCAAAGAATACCGTAAGAATAATCCAGGAACATTTTTCCC
AAAAAGTTAATGTTGAAGCTCGAATAATCAAAAGCATAGACTGTTTTGAA
TCTACAATCTTGCTCAAAATATATCGACATTTTAGTGTACTTTAACGTTT
TTCAGAATTTAAAGTGCGGGCGAGAATTGCTATTTTAGCACTTCCACTTT
CTTCCATTGAATACTTTGATTTTTGAGGGGTTCGGTGATCGAAACAATTT
TGAACTTTTAAATATTGAGATCCTAAGGTCCTATCTTAAGCCTAGTGTTA
ACTGTTAACCAACTCTGGTTTTATAATGCGCTTGAAAATCATTTGTGGTG
TTTAAAATTTCACAGGGAAAATCTCTTTTGTCTCAAATATTTTCTGTGGG
ATTGTAGTTAACAAGTCTTTCATTGATACGTTTTAGATTGTATGGAGCAA
CTATGGGAATCTCAGCACTGGCAACTACAATATTTTCTGGCAGTTTTACC
CTGGTCATTATTTGCTTGTATGTTGGTCGAAAAGAAAAGCTGAAAAAGGT
AAGAAATATGCGGGAAATCTGAAATGACAAGTATATGTGTCTATTTTTCT
TGATAAATCTTTTGTTGTTGCAGTCTATTACTACAGTCTACTAAAGCGTA
CCTTAAAGGAAGAAATTTTGCGGATTTGGCCAGAATCCGCCAAATTAAGT
TCCCGCCAAAATTTCTTTTTTCCGCCATCCACCAAATTAAATTCCCGCCA
AATTAAACTTTTTGAAAGTATGATCTCTTTTAAGGTGTTTTTGCATTTCT
TTGCTGTTTTTATGCCATTTTAAGGTTAAATTTTTAAGCGACCGCCAAAT
TAAGTTCCCGCCAAATTTAGTTTTTTCGTCCGTCCGCAAAATTAAATTCC
CTCTAAAAGACTTTTTCGGCCATCTGCCAAATTAAGTTCCCGCCAAAATT
TCTTTTTTCCGCCATCCACCAAATTAAATTCCCGCCAAATTAAACTTTTT
GAAAATATGATCTCTTTTAAGGTGTTTTTGCATTTCTTTGCTGTTTTTAT
GCCATTTTAAGGTTAAATTTTTAAGCGACCGCCAAATTAAGTTCCCGCCA
AATTAAGTTTTTTCGTCCGTCCGCCAAATTAAATTCCCTCTAAAAGACTT
TTTCGGCCATCCGCCAAATTAAATTCCCACCAAAATTTCTTCCTTTAATA
CTATTTTCGTACCGAATTTCCAGTAAAAACCTCCTTGAGAATAAATTTCT
TTTTCAGATAGATTCTTATTTTTTTATAAGCATAACCTTTATTAGCATAT
TCAGGCCTAAATTCGGTAAAAAATAAGCAAAATGTTAAGCTTACCTCCAA
GCTGAAATGCAAAAAAATTGTGAGGCTTCTCTAAAACTCTGACTTTAGGG
TTGCTTCTGTTTGAGCTTTCTTTGACGAAAGGTTTTCACCTGCGGCGCCA
AATTTCAAAAAAAACTGTCATTCTTTGAGCAAAATCAATGTTCCTAAGAT
TTTGTTAAGCATATTGAGCCTCAACCCGATTTTCTCGTAGACACTGATAA
AGTGAGACAGGGTACCCCTCCTCATATCAGAATCACGCCAGCACCAATTC
TGAAAATGAGCCGGATGGATGGCGAAATATCGACTAAATTCGCTCATAAC
TATGATATGATGCCGCTTCTTGTGGAACCATTGTGGAGCACGAAGAGCTG
CTTGGAGGTTAGGCGGTGGGTGTTGTGCCCGTGGTTTGGGTGGTGTGTTT
GGGGTATAGGCTTACGACCCATTTTTCCTGCAGGTAAAGGATCCAACCCC
ACAGGATATTCTGTCTGTGAACAGACCCAATATCTGCGGAAATTTATACG
TGTTATACACTCTGGATACAGAGTATGAACTCTGGTACTCTTAGGTGCCA
AATAAACGGGGGGGGGGCTGGAAAATTTTAGGTAAAGGTAAAAATAAAAA
TAAGGTAAATATAGGCTAAAATCAGGCTTTTTGGAGCAAAATAAGGCGAC
TTCTTCTTGTTTAACTGAAAATATTCTTAAACAAAATAAAAATTAAGAAA
CGGGGGGTCCTAATAAGGTCCGGGGGGAAATTAACAAGCGGGGGACGTTT
ATTTGGCACCTAAGAGTACAGGAACAGAGTATATGGGGTATGTGAAACGG
CGTTTTTTTAATGCAAATGATTAAATGTATTAAACCATTCTTTATATTTT
TCTTTATTCTTCAGGGGAAAGAATGTTTGGTCGACGAAGAGGGAGAGTAA
GTTTTTTGAAATTCAATTTTTTAAAGATATGTTTTGAGAAATTCACTCGA
AATATTGTTAGAAGCTTAGTACTCTGCTTTTGTGGCCACAATCATACTCT
CGGTTGCAAAAAGGGGGGGGGGGGGCAAAAAAAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAGAAGAAAATGAAGACTTTTGCGAGAAAGAGT
ATTTCAACTTTGAAGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGAAAA
AATTTTCGCAGTAGTTGGTGTATTAGTCTAGCAAGCTAGACGACTTATTC
AGATATAGTAGAAATAAAACAAAAAGTAATGGAGGGAATAAATTTTAGCA
CAAACTAATATTATCCCGTAACAATTATCGTATTATCATATAACGCCTAT
AATACTGTATTACACGCATTATAAACGACTCCAGTCTATTGGTGTATCTT
TTATCGAACAATAAAAATTTTTGCGGAAAATTTTTGTAAATGTTTCTTTG
TCTCGAAATCTTCAAAATAGTGGTTTTTCATCAATTTTTCATCTGGATTT
TGCTTAAAAAAACAGTCAGAACTTTTGTCACATCTTTTTAGAAAAATTTT
CCGCTAAATTTAAAATAGTTCAATTCTTTGCGGACAGTTTGAAAAAAGTT
CGAAACAAAAAGGTTAATTACCCATTAAAACTTAGCACTTTTTATAAAAG
AAAGTGATCACAACATATTATTAACTTCTTTTTAAAGTTCATAACGTCAT
TTTTGCAATTAAGTTCTTAATTACTCTTAAGGGTTTGATTAAAAAGCATT
TTATAAAGGCAATTCTTTGTTAAAAGCGTTAAAGAATTTTTTAAGACACT
GCTTAAATTTAGGTTTACATTTTGAAAGGCCGTACGCAAGACCAGAGACG
CTATAATGGATTGCAGTAAAAATTTTGTTCGTTTTGTTCAGGTTGTCCAA
TGGTAACTCGTTGGAAAAAACAAAGAACGAGGAAATCGAACTGCTCTAGT
TACTTGATCCTGATCTCAATATTGACTTACACAAATGATTTTGGTTGAAT
CATATTAACAAAATTTCAATTTTAAATACTGTACTGCAAAAACGATGAAT
AGTTTGAAAAATATAAATTTTGTTATCAGTTATTTTTTTACCGCAACATG
ACATTGTATATACTTTTGCTTTTCTAAGCTGTAAATAGTTTTTAGATTTA
TCTTTTCTACAGGTCTTCT

Coding sequence (CDS) from alignment at sc0000185:228020..232738-

>TCONS_00014305 ID=TCONS_00014305|Name=TCONS_00014305|organism=Clytia hemisphaerica|type=CDS|length=1755bp|location=Sequence derived from alignment at sc0000185:228020..232738- (Clytia hemisphaerica)
GTTGTCCAATGGTAACTCGTTGGAAAAAACAAAGAACGAGGAAATCGAAC
TGCTCTAGGGGAAAGAATGTTTGGTCGACGAAGAGGGAGAATTGTATGGA
GCAACTATGGGAATCTCAGCACTGGCAACTACAATATTTTCTGGCAGTTT
TACCCTGGTCATTATTTGCTTGTATGTTGGTCGAAAAGAAAAGCTGAAAA
AGCTGGCTTTCGAGATTTATTGACAGGATGGGTGTACAAGAAGAGAAAGA
ATCATCTTTTATATCCTGGCATTGTCATCAGAACTATCACATTGATCGTT
GTAGTCGTCTCTTATCCTAAACTTGGCATGGTTGGCAAGATTTAATTGAA
AGTTGTCCAATGGTAACTCGTTGGAAAAAACAAAGAACGAGGAAATCGAA
CTGCTCTAGGGGAAAGAATGTTTGGTCGACGAAGAGGGAGAATTGTATGG
AGCAACTATGGGAATCTCAGCACTGGCAACTACAATATTTTCTGGCAGTT
TTACCCTGGTCATTATTTGCTTGTATGTTGGTCGAAAAGAAAAGCTGAAA
AAGCTGGCTTTCGAGATTTATTGACAGGATGGGTGTACAAGAAGAGAAAG
AATCATCTTTTATATCCTGGCATTGTCATCAGAACTATCACATTGATCGT
TGTAGTCGTCTCTTATCCTAAACTTGGCATGGTTGGCAAGATTTAATTGA
AAGTTGTCCAATGGTAACTCGTTGGAAAAAACAAAGAACGAGGAAATCGA
ACTGCTCTAGGGGAAAGAATGTTTGGTCGACGAAGAGGGAGAATTGTATG
GAGCAACTATGGGAATCTCAGCACTGGCAACTACAATATTTTCTGGCAGT
TTTACCCTGGTCATTATTTGCTTGTATGTTGGTCGAAAAGAAAAGCTGAA
AAAGCTGGCTTTCGAGATTTATTGACAGGATGGGTGTACAAGAAGAGAAA
GAATCATCTTTTATATCCTGGCATTGTCATCAGAACTATCACATTGATCG
TTGTAGTCGTCTCTTATCCTAAACTTGGCATGGTTGGCAAGATTTAATTG
AAAGTTGTCCAATGGTAACTCGTTGGAAAAAACAAAGAACGAGGAAATCG
AACTGCTCTAGGGGAAAGAATGTTTGGTCGACGAAGAGGGAGAATTGTAT
GGAGCAACTATGGGAATCTCAGCACTGGCAACTACAATATTTTCTGGCAG
TTTTACCCTGGTCATTATTTGCTTGTATGTTGGTCGAAAAGAAAAGCTGA
AAAAGCTGGCTTTCGAGATTTATTGACAGGATGGGTGTACAAGAAGAGAA
AGAATCATCTTTTATATCCTGGCATTGTCATCAGAACTATCACATTGATC
GTTGTAGTCGTCTCTTATCCTAAACTTGGCATGGTTGGCAAGATTTAATT
GAAAGTTGTCCAATGGTAACTCGTTGGAAAAAACAAAGAACGAGGAAATC
GAACTGCTCTAGGGGAAAGAATGTTTGGTCGACGAAGAGGGAGAATTGTA
TGGAGCAACTATGGGAATCTCAGCACTGGCAACTACAATATTTTCTGGCA
GTTTTACCCTGGTCATTATTTGCTTGTATGTTGGTCGAAAAGAAAAGCTG
AAAAAGCTGGCTTTCGAGATTTATTGACAGGATGGGTGTACAAGAAGAGA
AAGAATCATCTTTTATATCCTGGCATTGTCATCAGAACTATCACATTGAT
CGTTGTAGTCGTCTCTTATCCTAAACTTGGCATGGTTGGCAAGATTTAAT
TGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008001XLOC_008001Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014305-proteinTCONS_00014305-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014305-exon-sc0000185-1575043694:232714..232738TCONS_00014305-exon-sc0000185-1575043694:232714..232738Clytia hemisphaericaexon
TCONS_00014305-exon-sc0000185-1575043694:232119..232242TCONS_00014305-exon-sc0000185-1575043694:232119..232242Clytia hemisphaericaexon
TCONS_00014305-exon-sc0000185-1575043694:231441..231552TCONS_00014305-exon-sc0000185-1575043694:231441..231552Clytia hemisphaericaexon
TCONS_00014305-exon-sc0000185-1575043694:229743..229774TCONS_00014305-exon-sc0000185-1575043694:229743..229774Clytia hemisphaericaexon
TCONS_00014305-exon-sc0000185-1575043694:228020..228297TCONS_00014305-exon-sc0000185-1575043694:228020..228297Clytia hemisphaericaexon
TCONS_00014305-exon-sc0000185-1510915933:232714..232738TCONS_00014305-exon-sc0000185-1510915933:232714..232738Clytia hemisphaericaexon
TCONS_00014305-exon-sc0000185-1510915933:232119..232242TCONS_00014305-exon-sc0000185-1510915933:232119..232242Clytia hemisphaericaexon
TCONS_00014305-exon-sc0000185-1510915933:231441..231552TCONS_00014305-exon-sc0000185-1510915933:231441..231552Clytia hemisphaericaexon
TCONS_00014305-exon-sc0000185-1510915933:229743..229774TCONS_00014305-exon-sc0000185-1510915933:229743..229774Clytia hemisphaericaexon
TCONS_00014305-exon-sc0000185-1510915933:228020..228297TCONS_00014305-exon-sc0000185-1510915933:228020..228297Clytia hemisphaericaexon
TCONS_00014305-exon-sc0000185-1491911889:232714..232738TCONS_00014305-exon-sc0000185-1491911889:232714..232738Clytia hemisphaericaexon
TCONS_00014305-exon-sc0000185-1491911889:232119..232242TCONS_00014305-exon-sc0000185-1491911889:232119..232242Clytia hemisphaericaexon
TCONS_00014305-exon-sc0000185-1491911889:231441..231552TCONS_00014305-exon-sc0000185-1491911889:231441..231552Clytia hemisphaericaexon
TCONS_00014305-exon-sc0000185-1491911889:229743..229774TCONS_00014305-exon-sc0000185-1491911889:229743..229774Clytia hemisphaericaexon
TCONS_00014305-exon-sc0000185-1491911889:228020..228297TCONS_00014305-exon-sc0000185-1491911889:228020..228297Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:228020..232738 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86209	2.19811	2.88512	4.88533	1.18948	0.835508	1.38601	1.29756	1.15621	1.94364	2.4823	2.34974	2.67238	1.42149	1.05736	2.38885	1.69215	3.69503	2.29199	2.18036	1.98989	1.52523	6.068	3.88212	2.52536	2.25383	30.102	25.385	19.2537	12.4127
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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