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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014289 ID=TCONS_00014289|Name=TCONS_00014289|organism=Clytia hemisphaerica|type=transcript|length=2468bp
gaacATTCTAGAACATTCTCTTTTtagaacaaaatgtttttaattgtcAT
GTGGTTATAAATCGTTTATTATTTTGCTGAAGTAATCTAATCCGTTCTTG
TATAAATAGACGAGCTACAGAAAGGGGAGGCATCTCATTTCATTACAAAC
TTTCTACCTAACAGACAACATTTAGTGAGCATATTTTAATATGGTGAAGT
ACACGTTGAACTACTTTCCAGCAGCTGGACGAGGAGAAGCAATCAGGTTA
ATGTTTCATGCTGCTGGAGTTGACTTCAATGACAACCGAATGGCTGGAGA
GGAGTGGGCCAAAAATAAACCAGATGCTCGAAGATTTCCACTCCATCAAA
TGCCTACTTTAGAGGTCGATGATAATGTCATCTGTCAATCAAGTGCTATT
GGTCGATTCGTTGCTAGGGAACTTGGTTTCTATGGTAACAGCTCATTGGA
ACAAGCTGCGATCGATCAAGTTTGTGAAACGTTCAATGATATTGGAGCAG
AAATAATCAGAATTATGTTTGGAGGCCATGATGAGGAAATTAAGaaaaca
aaatttgaagaattttacgCCTCAGACAAATACAAGTTGTTGATGGGATT
CGTCTCGAAAACTTTGAAGAGACACAACGAGGGAAAAGATTTCATGATTG
GAGAAAAGATTTCCCTGGCTGATTTCGTTTTGGTTGGAGTATTATGTATG
ATCGAATTAGATTTAAAGGAGTTTCCAGAAATCACAGCTCTTCGTGAACG
AGTATTGAGTATTGAGAACGTCAAAAAGTACATGGACACACAGAAAAAGT
AACTTATCATTTGTCACGCTATTCAAGTATTATATGTTTTGAACGAATTC
AAATTAgggatttttctgttttttattaTGGTGATATTTGTATATAACGC
attaaatatattataaaaaaatacgacAAACTGATGGCATCCGTGTCTGC
CTTAAAGAAAAATCGTGACTGGAAAAATTTAACCAGTTACTTTCctaccg
gaaaattttttttttccgctATCCACCAATTCAAATTCACGCCATGTTTA
ATTTATTTCATGTTTTCCAAATGTGTGCTCTTTCAAGGCTTAGTTATTAA
ACGAGTAGGTTGATTGCTAATATAAcgatttttggccaaaaatatcagTT
GTGACTAAATCCTATAGTATTTCCCAATATTATTTCTTATCAGGTTAAGA
GTTGAGTAtcggtacacgttttttttaaagaaactagTTCTACCAaacag
cctcaatgtttcttaaggaatcggccttttgagcgttaaatgtttcttac
atgtttctaaacattttgacataatcagccatAATcagttttgattggaa
gattcttaaaaaaaaacgagttaaaaaatgttattttcttattctcagcc
tcaACATGtttcttaaatgtttcttagtttttaagcattctgagcctcat
gtttcttaaaagtgtgtttcttaaaaaaacaaacgtgtataCAACCAGCT
AGATTTAGAGTTGGAGCTCTCAAGAGTTCGCTTTTAAGACCCAAAATAAA
TCCCctcttaaaaaaatttagaCTATCCTTCCaccgaaattttctttttg
aggtatttaagaaatatttccGAGATTTTGTTGACTACTACCCTAACGCA
CTTTCCCTACCCACCCACACACCACGCTGGTCATTAAACAAGCGACCGTA
GTAATGAATTTCGGAACCTGATTTTTGACTGAAGCAGATATTATGTAAAG
TCAATGATAAAGTAAAGCCAAATTTTTAAGATTGCACTTTAAAGAGCAGA
AAAGATGGACTATTCCGTCACAAATACACACGGAAGCatattttcgactt
tttgacTTCACGAAGTAAATTCTAGGCCCAGGAGTTCTGTGATACGATCC
AAGATTAAAGTTATTCATGTTAGAAAGATAAATTTCAGAACTTTTAGGAG
CTATGAGGGATGTAAAATTCCAAAAACGTACTCAAGGTCAACCTCGTCCC
CTTGTATTCCAGGTATTCCAGAGAATATTATATACTCATAACTTACCAGT
GAATGAGAACACGACGGAGAGTTTCAAAGGAGTGACTGTCAACAAAGCCA
CATCTTCAGAAACATTGGACACTTTGATGACCAGTGGAAGCAGGATATCC
GGTAtccaaaacaaaatcaattgCATCTATAATCAAAAATACAGGGGAAA
TAATTCATAATCTGCATGATCTTTTAAGGCGGGTGgaagattttaaaagt
tctcagaagactctccagtgttgcatatcatgaatacagtagagtctcta
aAACTCAATCACTCATGGAGataacaaatttgttcgaattaaggaaattt
ttagttatggagtaaggtatTATAAGGTATTATTAACTGAACagactaaa
gtctattcacgataagtgtgcactaaattttgctttgctTGTTACTcttt
gtctcccgaatagacggg Run BLAST on NCBI protein sequence of glutathione S transferase >TCONS_00014289-protein ID=TCONS_00014289-protein|Name=glutathione S transferase|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MVKYTLNYFPAAGRGEAIRLMFHAAGVDFNDNRMAGEEWAKNKPDARRFP
LHQMPTLEVDDNVICQSSAIGRFVARELGFYGNSSLEQAAIDQVCETFND
IGAEIIRIMFGGHDEEIKKTKFEEFYASDKYKLLMGFVSKTLKRHNEGKD
FMIGEKISLADFVLVGVLCMIELDLKEFPEITALRERVLSIENVKKYMDT
QKK Run BLAST on NCBI transcript from alignment at sc0000185:233152..236545+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014289 ID=TCONS_00014289|Name=TCONS_00014289|organism=Clytia hemisphaerica|type=transcript|length=3394bp|location=Sequence derived from alignment at sc0000185:233152..236545+ (Clytia hemisphaerica)
gaacATTCTAGAACATTCTCTTTTtagaacaaaatgtttttaattgtcAT
GTGGTTATAAATCGTTTATTATTTTGCTGAAGTAATCTAATCCGTTCTTG
TATAAATAGACGAGCTACAGAAAGGGGAGGCATCTCATTTCATTACAAAC
TTTCTACCTAACAGACAACATTTAGTGAGCATATTTTAATATGGTGAAGT
ACACGTTGAACTACTTTCCAGCAGCTGGACGAGGAGAAGCAATCAGGTTA
ATGTTTCATGCTGCTGGAGTTGACTTCAATGACAACCGAATGGCTGGAGA
GGAGTGGGCCAAAAATAAACCAGATGGtaagttttgatattttgaactTA
TCTTTTATACTGTTGCAGATCCActcatacacccctgtatcgtTGACCCA
GCCAGAATTTAAGAGGGTCAATTGCTGTTTGTGTAGTTCTAGTTAGTTTT
TAAATTTACTTCTAAGTGCTATCAAGAAAtaagttacacgttttttataa
agcTTAGGGTAGATTTCTGTGAACCtcattatgcttagcaaaatgaattt
ttgagcctcgatttgcttataagcgttatacttgaaaaaaacgtgtaacg
tGTTTTGATGGTTTGGTCCAAACCTTAATGTTTCATTTGACGTGTTTTTC
ATTTCGTTTTAGCTCGAAGATTTCCACTCCATCAAATGCCTACTTTAGAG
GTCGATGATAATGTCATCTGTCAATCAAGTGCTATTGGTCGATTCGTTGC
TAGGGAACTTGGTTTCTATGGTAACAGCTCATTGGAACAAGCTGCGATCG
ATCAAGTTTGTGAAACGTTCAATGATATTGGAGCAGAAATAATCAGAATT
ATGTTTGGAGGCCATGATGAGGAAATTAAGGTAccacaaaatattcaaat
tttttacccCTATGTTACAGAACCGGTGGAACTCCCGCCCATCGAAAAAT
CTGGTCGAAAATTGGTCACGGTAGAAatataccctacaatttcagcccca
cacTAGAAACtgactttgttttcatccatatttgaaattaaattgcACTC
TGAAACAATcctgattgatttttttttgacctgagaaaacagaattttta
tccccactgggatttcaatagaaatctTTATTCCCAATGCGGGAAGCAGT
TCCAAAGGGCGCCATTTTAAGATCTATGGAGGGCAGACAAAGCACCAATC
CTCTTCAGATATCCTTACAGCTTGTAATTTTTGAGTCTATGAGTCTAAAC
TCGAGTCTAAACTATGAGTCTTTATTGTTTTatctttttagaaaacaaaa
tttgaagaattttacgCCTCAGACAAATACAAGTTGTTGATGGGATTCGT
CTCGAAAACTTTGAAGAGACACAACGAGGGAAAAGATTTCATGATTGGAG
AAAAGGTAGCATTTAGTTTATTTCACTTTATTGTTGACCCCTTTTCAGAA
CTTATATACTGCTCTTGATGACCCCATAAGTTTTCATGCCAACCTGAGCA
AGAACAGTTCTAGAAATAGCTTGAATTGACTTTTATTTCTACAGGACTTT
TTCACTTGAGATTGATTTTCTACCTGTTTTTTAGATTTCCCTGGCTGATT
TCGTTTTGGTTGGAGTATTATGTATGATCGAATTAGATTTAAAGGAGTTT
CCAGAAATCACAGCTCTTCGTGAACGAGTATTGAGTATTGAGAACGTCAA
AAAGTACATGGACACACAGAAAAAGTAACTTATCATTTGTCACGCTATTC
AAGTATTATATGTTTTGAACGAATTCAAATTAgggatttttctgtttttt
attaTGGTGATATTTGTATATAACGCattaaatatattataaaaaaatac
gacAAACTGATGGCATCCGTGTCTGCCTTAAAGAAAAATCGTGACTGGAA
AAATTTAACCAGTTACTTTCctaccggaaaattttttttttccgctATCC
ACCAATTCAAATTCACGCCATGTTTAATTTATTTCATGTTTTCCAAATGT
GTGCTCTTTCAAGGCTTAGTTATTAAACGAGTAGGTTGATTGCTAATATA
AcgatttttggccaaaaatatcagTTGTGACTAAATCCTATAGTATTTCC
CAATATTATTTCTTATCAGGTTAAGAGTTGAGTAtcggtacacgtttttt
ttaaagaaactagTTCTACCAaacagcctcaatgtttcttaaggaatcgg
ccttttgagcgttaaatgtttcttacatgtttctaaacattttgacataa
tcagccatAATcagttttgattggaagattcttaaaaaaaaacgagttaa
aaaatgttattttcttattctcagcctcaACATGtttcttaaatgtttct
tagtttttaagcattctgagcctcatgtttcttaaaagtgtgtttcttaa
aaaaacaaacgtgtataCAACCAGCTAGATTTAGAGTTGGAGCTCTCAAG
AGTTCGCTTTTAAGACCCAAAATAAATCCCctcttaaaaaaatttagaCT
ATCCTTCCaccgaaattttctttttgaggtatttaagaaatatttccGAG
ATTTTGTTGACTACTACCCTAACGCACTTTCCCTACCCACCCACACACCA
CGCTGGTCATTAAACAAGCGACCGTAGTAATGAATTTCGGAACCTGATTT
TTGACTGAAGCAGATATTATGTAAAGTCAATGATAAAGTAAAGCCAAATT
TTTAAGATTGCACTTTAAAGAGCAGAAAAGATGGACTATTCCGTCACAAA
TACACACGGAAGCatattttcgactttttgacTTCACGAAGTAAATTCTA
GGCCCAGGAGTTCTGTGATACGATCCAAGATTAAAGTTATTCATGTTAGA
AAGATAAATTTCAGAACTTTTAGGAGCTATGAGGGATGTAAAATTCCAAA
AACGTACTCAAGGTCAACCTCGTCCCCTTGTATTCCAGGTATTCCAGAGA
ATATTATATACTCATAACTTACCAGTGAATGAGAACACGACGGAGAGTTT
CAAAGGAGTGACTGTCAACAAAGCCACATCTTCAGAAACATTGGACACTT
TGATGACCAGTGGAAGCAGGATATCCGGTAtccaaaacaaaatcaattgC
ATCTATAATCAAAAATACAGGGGAAATAATTCATAATCTGCATGATCTTT
TAAGGCGGGTGgaagattttaaaagttctcagaagactctccagtgttgc
atatcatgaatacagtagagtctctaaAACTCAATCACTCATGGAGataa
caaatttgttcgaattaaggaaatttttagttatggagtaaggtatTATA
AGGTATTATTAACTGAACagactaaagtctattcacgataagtgtgcact
aaattttgctttgctTGTTACTctttgtctcccgaatagacggg Coding sequence (CDS) from alignment at sc0000185:233152..236545+ >TCONS_00014289 ID=TCONS_00014289|Name=TCONS_00014289|organism=Clytia hemisphaerica|type=CDS|length=2448bp|location=Sequence derived from alignment at sc0000185:233152..236545+ (Clytia hemisphaerica)
ATGGTGAAGTACACGTTGAACTACTTTCCAGCAGCTGGACGAGGAGAAGC
AATCAGGTTAATGTTTCATGCTGCTGGAGTTGACTTCAATGACAACCGAA
TGGCTGGAGAGGAGTGGGCCAAAAATAAACCAGATGCTCGAAGATTTCCA
CTCCATCAAATGCCTACTTTAGAGGTCGATGATAATGTCATCTGTCAATC
AAGTGCTATTGGTCGATTCGTTGCTAGGGAACTTGGTTTCTATGGTAACA
GCTCATTGGAACAAGCTGCGATCGATCAAGTTTGTGAAACGTTCAATGAT
ATTGGAGCAGAAATAATCAGAATTATGTTTGGAGGCCATGATGAGGAAAT
TAAGaaaacaaaatttgaagaattttacgCCTCAGACAAATACAAGTTGT
TGATGGGATTCGTCTCGAAAACTTTGAAGAGACACAACGAGGGAAAAGAT
TTCATGATTGGAGAAAAGATTTCCCTGGCTGATTTCGTTTTGGTTGGAGT
ATTATGTATGATCGAATTAGATTTAAAGGAGTTTCCAGAAATCACAGCTC
TTCGTGAACGAGTATTGAGTATTGAGAACGTCAAAAAGTACATGGACACA
CAGAAAAAGTAAATGGTGAAGTACACGTTGAACTACTTTCCAGCAGCTGG
ACGAGGAGAAGCAATCAGGTTAATGTTTCATGCTGCTGGAGTTGACTTCA
ATGACAACCGAATGGCTGGAGAGGAGTGGGCCAAAAATAAACCAGATGCT
CGAAGATTTCCACTCCATCAAATGCCTACTTTAGAGGTCGATGATAATGT
CATCTGTCAATCAAGTGCTATTGGTCGATTCGTTGCTAGGGAACTTGGTT
TCTATGGTAACAGCTCATTGGAACAAGCTGCGATCGATCAAGTTTGTGAA
ACGTTCAATGATATTGGAGCAGAAATAATCAGAATTATGTTTGGAGGCCA
TGATGAGGAAATTAAGaaaacaaaatttgaagaattttacgCCTCAGACA
AATACAAGTTGTTGATGGGATTCGTCTCGAAAACTTTGAAGAGACACAAC
GAGGGAAAAGATTTCATGATTGGAGAAAAGATTTCCCTGGCTGATTTCGT
TTTGGTTGGAGTATTATGTATGATCGAATTAGATTTAAAGGAGTTTCCAG
AAATCACAGCTCTTCGTGAACGAGTATTGAGTATTGAGAACGTCAAAAAG
TACATGGACACACAGAAAAAGTAAATGGTGAAGTACACGTTGAACTACTT
TCCAGCAGCTGGACGAGGAGAAGCAATCAGGTTAATGTTTCATGCTGCTG
GAGTTGACTTCAATGACAACCGAATGGCTGGAGAGGAGTGGGCCAAAAAT
AAACCAGATGCTCGAAGATTTCCACTCCATCAAATGCCTACTTTAGAGGT
CGATGATAATGTCATCTGTCAATCAAGTGCTATTGGTCGATTCGTTGCTA
GGGAACTTGGTTTCTATGGTAACAGCTCATTGGAACAAGCTGCGATCGAT
CAAGTTTGTGAAACGTTCAATGATATTGGAGCAGAAATAATCAGAATTAT
GTTTGGAGGCCATGATGAGGAAATTAAGaaaacaaaatttgaagaatttt
acgCCTCAGACAAATACAAGTTGTTGATGGGATTCGTCTCGAAAACTTTG
AAGAGACACAACGAGGGAAAAGATTTCATGATTGGAGAAAAGATTTCCCT
GGCTGATTTCGTTTTGGTTGGAGTATTATGTATGATCGAATTAGATTTAA
AGGAGTTTCCAGAAATCACAGCTCTTCGTGAACGAGTATTGAGTATTGAG
AACGTCAAAAAGTACATGGACACACAGAAAAAGTAAATGGTGAAGTACAC
GTTGAACTACTTTCCAGCAGCTGGACGAGGAGAAGCAATCAGGTTAATGT
TTCATGCTGCTGGAGTTGACTTCAATGACAACCGAATGGCTGGAGAGGAG
TGGGCCAAAAATAAACCAGATGCTCGAAGATTTCCACTCCATCAAATGCC
TACTTTAGAGGTCGATGATAATGTCATCTGTCAATCAAGTGCTATTGGTC
GATTCGTTGCTAGGGAACTTGGTTTCTATGGTAACAGCTCATTGGAACAA
GCTGCGATCGATCAAGTTTGTGAAACGTTCAATGATATTGGAGCAGAAAT
AATCAGAATTATGTTTGGAGGCCATGATGAGGAAATTAAGaaaacaaaat
ttgaagaattttacgCCTCAGACAAATACAAGTTGTTGATGGGATTCGTC
TCGAAAACTTTGAAGAGACACAACGAGGGAAAAGATTTCATGATTGGAGA
AAAGATTTCCCTGGCTGATTTCGTTTTGGTTGGAGTATTATGTATGATCG
AATTAGATTTAAAGGAGTTTCCAGAAATCACAGCTCTTCGTGAACGAGTA
TTGAGTATTGAGAACGTCAAAAAGTACATGGACACACAGAAAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014289-exon-sc0000185-1491911889:233152..233477 | TCONS_00014289-exon-sc0000185-1491911889:233152..233477 | Clytia hemisphaerica | exon |
| TCONS_00014289-exon-sc0000185-1510915933:233152..233477 | TCONS_00014289-exon-sc0000185-1510915933:233152..233477 | Clytia hemisphaerica | exon |
| TCONS_00014289-exon-sc0000185-1575043694:233152..233477 | TCONS_00014289-exon-sc0000185-1575043694:233152..233477 | Clytia hemisphaerica | exon |
| TCONS_00014289-exon-sc0000185-1491911889:233814..234031 | TCONS_00014289-exon-sc0000185-1491911889:233814..234031 | Clytia hemisphaerica | exon |
| TCONS_00014289-exon-sc0000185-1510915933:233814..234031 | TCONS_00014289-exon-sc0000185-1510915933:233814..234031 | Clytia hemisphaerica | exon |
| TCONS_00014289-exon-sc0000185-1575043694:233814..234031 | TCONS_00014289-exon-sc0000185-1575043694:233814..234031 | Clytia hemisphaerica | exon |
| TCONS_00014289-exon-sc0000185-1491911889:234443..234556 | TCONS_00014289-exon-sc0000185-1491911889:234443..234556 | Clytia hemisphaerica | exon |
| TCONS_00014289-exon-sc0000185-1510915933:234443..234556 | TCONS_00014289-exon-sc0000185-1510915933:234443..234556 | Clytia hemisphaerica | exon |
| TCONS_00014289-exon-sc0000185-1575043694:234443..234556 | TCONS_00014289-exon-sc0000185-1575043694:234443..234556 | Clytia hemisphaerica | exon |
| TCONS_00014289-exon-sc0000185-1491911889:234736..236545 | TCONS_00014289-exon-sc0000185-1491911889:234736..236545 | Clytia hemisphaerica | exon |
| TCONS_00014289-exon-sc0000185-1510915933:234736..236545 | TCONS_00014289-exon-sc0000185-1510915933:234736..236545 | Clytia hemisphaerica | exon |
| TCONS_00014289-exon-sc0000185-1575043694:234736..236545 | TCONS_00014289-exon-sc0000185-1575043694:234736..236545 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000185 | supercontig | sc0000185:233152..236545 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00014289 vs. Swiss-Prot (Human)
Match: GSTA2 (Glutathione S-transferase A2 OS=Homo sapiens GN=GSTA2 PE=1 SV=4) HSP 1 Score: 88.1965 bits (217), Expect = 3.951e-19 Identity = 63/201 (31.34%), Postives = 104/201 (51.74%), Query Frame = 2
Query: 197 KYTLNYFPAAGRGEAIRLMFHAAGVDFNDNRM-AGEEWAKNKPDARRFPLHQMPTLEVDDNVICQSSAIGRFVARELGFYGNSSLEQAAIDQVCETFNDIGAEIIRIMFGGHDEEIKKTKFEEFYASDKYKLLMGFVSKTLKRHNEGKDFMIGEKISLADFVLVGVLCMI-ELD---LKEFPEITALRERVLSIENVKKYM 784
K L+Y GR E+IR + AAGV+F + + + E+ K + D Q+P +E+D + Q+ AI ++A + YG E+A ID E D+G I+ + F +E+ K + ++Y K LK H G+D+++G K+S AD LV +L + ELD + FP + AL+ R+ ++ VKK++
Sbjct: 4 KPKLHYSNIRGRMESIRWLLAAAGVEFEEKFIKSAEDLDKLRNDGYLM-FQQVPMVEIDGMKLVQTRAILNYIASKYNLYGKDIKEKALIDMYIEGIADLGEMILLLPFSQPEEQDAKLALIQEKTKNRY---FPAFEKVLKSH--GQDYLVGNKLSRADIHLVELLYYVEELDSSLISSFPLLKALKTRISNLPTVKKFL 198
The following BLAST results are available for this feature:
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