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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014272 ID=TCONS_00014272|Name=TCONS_00014272|organism=Clytia hemisphaerica|type=transcript|length=776bp
ACCGCAAACCacaaaaactcaatttttagaaCTCAGCTGCTCAAAAAACC
CATTTGCAAAGTAAAACTAATTTCAAAGTggcctttgaaaataaaaaatg
caatGAGATGGTAAGAATTGCTAGAGATTTACTTCACTAgaaaaaatgag
acaaaatgggTTTCGGACAAGCAAAAGTATCGAAAAataataatcagttt
ttatgGCTCAATCAAAACTATTATTTGATGAGACTTCTGTATCCTGAGAT
GAGCTCTGAGTTTCTTCATTGTCTTCATAATCTTTAGTGTAGTCTCTTTT
tgtatgataaattttgaagcatGGCTCAAAGCATAACGGAACATTGCAGT
CTGGGCAATGGTAACGTGTATCCTTACGGATTTTGCGTTTGGTGCATCTG
TGACACCTTTTTTGCGCGTTTAGTTTCTTATCGGTTGCAGGAAGGAAAGC
AAGAAAATGACGTTCAACCAGTCGAAGTAGGTTTGGTCCTGCATTGGGGC
CTCGATTTGGAGCTGCGGCACCGTGATGATGTCTGGTTATCAATTCTTCG
ATGacattaattttgaatttcagGATTCGGGCAACTTGACCACCAACGCG
TCCACCACCTCTACCAGCACCACAAGTACCACGGCGACCACGAAAAGCAT
TACGAACAGGTGATTGGATAGGTGAAGAATTACCACTGATTGAAGGTCCA
GCTTGATCAGGATCAAATGGGGGAGGACCACTGTCACTTTCACCGCCACC
GCCTGCACTACCATTGCTTTCATTAT Run BLAST on NCBI transcript from alignment at sc0000185:4459..6828+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014272 ID=TCONS_00014272|Name=TCONS_00014272|organism=Clytia hemisphaerica|type=transcript|length=2370bp|location=Sequence derived from alignment at sc0000185:4459..6828+ (Clytia hemisphaerica)
ACCGCAAACCacaaaaactcaatttttagaaCTCAGCTGCTCAAAAAACC
CATTTGCAAAGTAAAACTAATTTCAAAGTggcctttgaaaataaaaaatg
caatGAGATGGTAAGAATTGCTAGAGATTTACTTCACTAgaaaaaatgag
acaaaatgggTTTCGGACAAGCAAAAGTATCGAAAAataataatcagttt
ttatgGCTCAATCAAAACTATTATTTGATGAGACTTCTGTATCCTGAGAT
GAGCTCTGAGTTTCTTCATTGTCTTCATAATCTTTAGTGTAGTCTCTTTT
tgtatgataaattttgaagcatGGCTCAAAGCATAACGGAACATTGCAGT
CTGGGCAATGGTAACGTGTATCCTTACGGATTTTGCGTTTGGTGCATCTG
TGACACCTTTTTTGCGCGTTTAGTTTCTTATCGGTTGCAGGAAGGAAAGC
AAGAAAATGACGTTCAACCAGTCGAAGTAGGTTTGGTCCTGCATTGGGGC
CTCGATTTGGAGCTGCGGCACCGTGATGATGTCTGGTTATCAATTCTTCG
ATGacattaattttgaatttcaggTGGGTGTCGATCGCGTCATCGAAAAT
GACTTTCTTGTACACAAGATAGCTGTTGTACATAGCAATATCAATAAATA
ATTCCCCCAGCTTACGGTACCATTTCACCCCTCTTCTCTGGGATGAGTAG
GGGATTACAACTCTGCTCAAAAGATCTACCCCACCCATTGTGGAATTGTA
ATCGACAATGACATCAGGTTTGTATACTGCCTCTCCGGTACGGAAATTTC
TCTTTCCTGAATCAATGAGTTGGCCAGTATGAATCGTGGATAACATTGAC
AccactttttctttctttgttttggtcACATCATTCCACCTAAGGACCAT
CAAATCTccgttgaattttttttctggtggATTGCCTCTTACCGGACGCC
AATACCAGAAGTCGTATGGTAGATTTGCTTTCGCTCGCAAGGTACCGTAA
CAATCAGTATTGTAATTGAGAAGAATTTCTGCTATTTCTGGGGATGTATA
ATAATTATCCAGGGTTACACTATAGCCTTTCCCAAGAAGATCAGACAGTA
AGCTAAGGACAACTTTTAAAGGACTCTTTAGGTCCTCAAAGATAAATGGA
TTGTTGGCAGATTGTTCAGCAGGCTCAGTATAACTAGTTGTTGCCCCAGT
GTAAATAATAAAGTTCCAGAGATACCCACTAGAGCTTTCACAAAGCATGT
ATAATTTCACGCCATACCGTTCTCTTTTATTTGGTATATAAACTCGAAAA
GATAGGCGGCCTTTCCATAACGAAAGATACTCATCGATAGCCAATGCCTC
CTGCGGTACGTAATTTGCACGAAATTTTCCAACGAGGTACTCCATTGTCA
CGCGTAGTTTTCGAAGAGAGTCATCTTCCACTTCATCATCTGGTTTGGTG
AAGTGAATCATTTTACGAATTGCTTCAAAACGATCTCTGCGCATAAGTCT
TGGGAAAATTGGGGTCGAAAGCAAATGTCGTGTGGACCAATATAAGTTAT
ATTCTGGCTTTTTTATCACCCCCATAAGCATTAGAATTGCAATGTAAGTC
CACATTTCGTCTAATGTGACCGGTCTCCAGAGACGAAACAAGCTTCTCTC
TGTGTTTTCAATTCTCTCCTGGATCTCAGGGGTGTTTATCATTATTTCAG
CATAACTATTTGTAGCTTCAGCTATGTACTGAACAAGTTCATCGGAAAAA
AAAAGCTTGAATACTGCAATTGGTGTGAATTCATCCTCAGGAAAGTTTTT
AACGCCTTCACTACCAGTGAAGGGAAACCTCCTTCTTTGATTTCTTCCTT
CAGCCGTCCATGGATCCTCTGGTTCATCCCCACCATCTCCTTCACCGTTG
CCGTCTCCGCCACCGCCATCTCCGCCGCCGCCGCTGCCTTCTCTGCCGCC
ATCACCCTGCCTCTTCCACGTCCCGCTCTCCCACGCCTTGCTCTCCCGCG
CCCAGCTCTCCCGCGTCCAGCTCTCCCGCGTCCTGCTCTTCCACGTCCTG
CTCATCCACGTCCTGCTCTTTTGCGTCCAGCTCTTCTCACACCGCGTTCC
ACCTCAGATGCGTCAATTACTTCATTGTCTCTTGTGCTTCATCAtcttca
acattttcttcaacaaGGATTCGGGCAACTTGACCACCAACGCGTCCACC
ACCTCTACCAGCACCACAAGTACCACGGCGACCACGAAAAGCATTACGAA
CAGGTGATTGGATAGGTGAAGAATTACCACTGATTGAAGGTCCAGCTTGA
TCAGGATCAAATGGGGGAGGACCACTGTCACTTTCACCGCCACCGCCTGC
ACTACCATTGCTTTCATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014272-exon-sc0000185-1491911889:4459..5031 | TCONS_00014272-exon-sc0000185-1491911889:4459..5031 | Clytia hemisphaerica | exon |
| TCONS_00014272-exon-sc0000185-1510915933:4459..5031 | TCONS_00014272-exon-sc0000185-1510915933:4459..5031 | Clytia hemisphaerica | exon |
| TCONS_00014272-exon-sc0000185-1575043694:4459..5031 | TCONS_00014272-exon-sc0000185-1575043694:4459..5031 | Clytia hemisphaerica | exon |
| TCONS_00014272-exon-sc0000185-1491911889:6626..6828 | TCONS_00014272-exon-sc0000185-1491911889:6626..6828 | Clytia hemisphaerica | exon |
| TCONS_00014272-exon-sc0000185-1510915933:6626..6828 | TCONS_00014272-exon-sc0000185-1510915933:6626..6828 | Clytia hemisphaerica | exon |
| TCONS_00014272-exon-sc0000185-1575043694:6626..6828 | TCONS_00014272-exon-sc0000185-1575043694:6626..6828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000185 | supercontig | sc0000185:4459..6828 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR032718 | PGBD4_C_Znf-ribbon |
Blast
BLAST of TCONS_00014272 vs. Swiss-Prot (Human)
Match: PGBD4 (PiggyBac transposable element-derived protein 4 OS=Homo sapiens GN=PGBD4 PE=2 SV=3) HSP 1 Score: 77.411 bits (189), Expect = 4.714e-16 Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = -3
Query: 289 LKFKINVIEELITRHHHXXXXXXXXXXXXXNL--LRLVERHFLAFLPATDKKLNAQKRCHRC------TKRKIRKDTRYHCPDCNVPLCFEPCFKIYHTKRDY 573
+ F++ +IE ++ +HH RG ++ LRL RHF +PAT K N RC C +KIRK+TRY C +C+VPLC PCF+IYHTK++Y
Sbjct: 483 INFRLALIERMLEKHHKPGQQHLRGRPCSDDVTPLRLSGRHFPKSIPATSGKQNPTGRCKICCSQYDKDGKKIRKETRYFCAECDVPLCVVPCFEIYHTKKNY 585
The following BLAST results are available for this feature:
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