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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014253 ID=TCONS_00014253|Name=TCONS_00014253|organism=Clytia hemisphaerica|type=transcript|length=2260bpRun BLAST on NCBI transcript from alignment at sc0000183:399130..412196- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014253 ID=TCONS_00014253|Name=TCONS_00014253|organism=Clytia hemisphaerica|type=transcript|length=13067bp|location=Sequence derived from alignment at sc0000183:399130..412196- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014253 vs. Swiss-Prot (Human)
Match: SYRC (Arginine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=RARS PE=1 SV=2) HSP 1 Score: 799.275 bits (2063), Expect = 0.000e+0 Identity = 380/625 (60.80%), Postives = 477/625 (76.32%), Query Frame = 1
Query: 379 SKELQEERSKNRKLLYRVNILKRAIEEEQSKAQNRMLNIKESLTSIFELAIGNAFPELNNAPVVLAIAQNPKFGDYQCNSAMAISKLVAAQQGTKIAPQEVAKAIVANVAENPIIQKLDIAGPGFINIHLERKNIYEIVDKILKDKVNPPGVGAKKRVVIDFSSPNIAKQMHVGHLRSTIIGESLARLLEFVGHDVLRLNHVGDWGTQFGMLIAHLEDEFPNYKEVVPPIADLQAFYKASKKRFDDDAEFKKRAYQRVVQLQGGDADVRKAWTLICEASRKEFQVIYNQLDVSLIERGESFYNDLMPKVVEGMLATGQCEKADDGRTISFAEGMKVPLILLKSDGGFTYDTSDLAAIRQRLHDEKGDWVIYVVDAGQGDHFKTLFGVARKLGWYNPTVTRVDHVAFGVVLGEDKKKFKTRSGDTVRLADLIQEGLKRSMDKLLEKGRDKELTKEELEAAQTSVAYGCIKYADLSHNRVMDYVFSFDKMLDDKGNTAVYLLYAYTRIRSILRTAKVDEAKLKSYIDNNNIRLDHEKEWKLGKMVSRFPEVIVKCMDDLYLHPLCEYLYELAGTMTEFYDACYCLTKDKETGDIKSVDMNRIALLEAVSRIFASGFHILGIKPVSRM 2253
S L++ + +N KL YR+NIL+++++ E++K M+NI L +F AI A+P+L N P+++ +Q KFGDYQCNSAM IS+++ ++ K+ P+E+A+ I ++ +N I+K++IAGPGFIN+HL + + E + +L + V P +G K+V++DFSSPNIAK+MHVGHLRSTIIGES++RL EF G+DVLRLNHVGDWGTQFGMLIAHL+D+FP+Y V PPI DLQ FYK SKKRFD + EFKKRAYQ VV LQG + D+ KAW LIC+ SR+E IY+ LDVSLIERGESFY D M +V+ G + DDGR I F G +PL ++KSDGG+TYDTSDLAAI+QRL +EK D +IYVVD GQ HF+T+F A+ +GWY+P VTRV H FGVVLGEDKKKFKTRSG+TVRL DL+ EGLKRSMDKL EK RDK LT EEL AAQTSVAYGCIKYADLSHNR+ DY+FSFDKMLDD+GNTA YLLYA+TRIRSI R A +DE L+ I LDHEKEWKLG+ + RFPE++ K +DDL+LH LC+Y+YELA TEFYD+CYC+ KD++TG I V+M R+ L EAV+ + A GF ILGIKPV RM
Sbjct: 38 SPNLEQLQEENLKLKYRLNILRKSLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQAKFGDYQCNSAMGISQMLKTKE-QKVNPREIAENITKHLPDNECIEKVEIAGPGFINVHLRKDFVSEQLTSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDRMNDIVKEFEDRGFVQ-VDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFKTRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDYIYELATAFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAVMAKGFDILGIKPVQRM 660 The following BLAST results are available for this feature:
BLAST of TCONS_00014253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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