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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014225 ID=TCONS_00014225|Name=TCONS_00014225|organism=Clytia hemisphaerica|type=transcript|length=2287bp
CACTGATCCAGGCAACATGGGTGTTACACGTGACTATTCTGGGTATAAAT
ATGAGTTGTTCACTTGACCAAAGCATCACTTTTGAAGGAGTTCTGAAGAC
TCGCACATTAGCTGATATACATCTACCACCTCACAAAAATGGACATGAGC
TCATTCAATGTTGGCGCTCTGATTTTCAACAAAGAACTTCCTTTTGTCGT
GGAAGTTGATTTTGACATTGATGATCACAAATTCTCCATTCGTGGCAAAG
GTGTTGGCAATGCTGAGAAAGGATTGATGGTTGGCAAATATGTTGTTTCC
GAAGGTGAATTACCATGCTCATGGTCAGCAATCACTCATAATTTCCAATA
CGGACAAGTTTGTTTCACCCGTTACCCAAAAGATATACCTGACCACATCA
AGAGTCTGTTCCCAGAGGGTTACGTCCAAACACGACACAGTCATTTTGTC
GATGATGGAGAGTATACGTCCGTACATACGTTAACGTACGAAAACGGAGT
GATTTACAACCGCGTCAAAGTTAACGGTGGCGGTTTTAAACCCGATGGTA
ATGTTTTTGGCAAACGTCTTCGGGAAGTGGAACCTGATATCTGTTCAGTC
TATTTCCCGGGAAAAGATGGATACAACTGTGAATTTGTCAAGCTTTCGGA
GACGGTAGATGGCGATTATCAAGCAATCCGTATTGACCAAGTGATCAGAC
CTCTTTCAGACGGACCCTCCCTTCCAATGACCAAGCTTTATCATCATTAC
AAATTCGAATACAGTAAGGATGCCAACGAAACGAGGGAACACATCATCAT
GAAGGAACAAGTCCACGCTAGTCACCATACCTCTAAATAATGAGATATCA
ACTTTTATTATTGGATTCTCAAGTTTAATGGTTGTTTGTCATTAATTATA
TGATATTGAAGTTTTATATATCTATTATAATCTGCTTGATTCATACTTTA
TTTTCATAgttgaaataaattttatatattttgcacATGCTTATTGGAAT
TAAAATGTTTCATACGCCTCAAAAATTATTCCACCGTCAAATATCTACCC
GAAATTTTGTGACAAGATTGAAACAGCCTACTCTGAATTTGTACTAAAAT
Tcctttaattaaaaatttgtacgtaaaaatctcaaaaagggcgtttttta
aaaacattcggTAGAGTCTATTCCACGGTCAAAgggaatcatgggtaatc
aggaccccGCGCTCAAATAAAAATTCtacgccccctcaaataaacacTCT
ACGCCTCCTTTAGCATGTAGCTATTAGTATAATATCAAGAAAAGTGGATC
TAGTAGTCTTCTAACTGATTTTGACCCGTTGCTACATTGACATTTGTACT
CCAACAATAATAAAAAGGCAGAATGGGGTTCCCAGTCACACGGTATAACA
TTTATGACATTATGATTTTGAAAAGCTAAATGCTTTCAATCTTCTTAGAT
GTACAAATACATTCCTGTTTCTAATCTCGAGTTGGTGTTGAAAACCCAAT
GATTGGGTGTGAATCTTTATAGAAGAGAAATTGTTTGTGttgaaactttg
aataaaaagcCTTCAATTCTTATTTAGAATTGTTCTGAATCTTGTTCTGA
AGCTTGGTGCTCATGCCACGCCCTATTTTGATATCTGTTGAACATAATAA
TCGATAGAAGGTATTTTCTTGAGCACTAGAgtttataatcaaatcaaata
taATTATAACCGAAAAATCGTTGTTTCTCTGGTGCAACATTTTACCCACC
AGCAGGGATGATAAAACTTATTATGTTAgctacagcacctgaccccgagg
atgtaggtgaaattttaatcagacctgaaagatgtagatttgcattaaaa
aaaatattatatgttttcaacgaaattttgaacccccaaaatcctttccc
aggggctagtttcattacttttgatagataggctaatttttttggtcttt
gAAGTTGACTCtcattttcgttataacccccagaatgtaggtttggtttt
atggctttaaatctagtatcagtaaaatgttgatattttttcaattggat
taaTTATAACCGtagattttagaaatatttcatgCCAAAACAATCCTCTA
AAGAGCTTTTTGTtgttctgaaaattggatttttttactttttaaccccc
agaatgtaggtgaaaagattcggttgtcGAGAGAAGAATTTCAGTACTCA
TCGGAAAtttttgttctctaagtgaaattcgtACTTTAGAAATTtactct
gacaaaaaattaacaaagatattaattttatcgtgct Run BLAST on NCBI protein sequence of green fluorescent protein >TCONS_00014225-protein ID=TCONS_00014225-protein|Name=green fluorescent protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MDMSSFNVGALIFNKELPFVVEVDFDIDDHKFSIRGKGVGNAEKGLMVGK
YVVSEGELPCSWSAITHNFQYGQVCFTRYPKDIPDHIKSLFPEGYVQTRH
SHFVDDGEYTSVHTLTYENGVIYNRVKVNGGGFKPDGNVFGKRLREVEPD
ICSVYFPGKDGYNCEFVKLSETVDGDYQAIRIDQVIRPLSDGPSLPMTKL
YHHYKFEYSKDANETREHIIMKEQVHASHHTSK Run BLAST on NCBI transcript from alignment at sc0000183:105091..108779- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014225 ID=TCONS_00014225|Name=TCONS_00014225|organism=Clytia hemisphaerica|type=transcript|length=3689bp|location=Sequence derived from alignment at sc0000183:105091..108779- (Clytia hemisphaerica)
CACTGATCCAGGCAACATGGGTGTTACACGTGACTATTCTGGGTATAAAT
ATGAGTTGTTCACTTGACCAAAGCATCACTTTTGAAGGAGTTCTGAAGAC
TCGCACATTAGCTGATATACATCTACCACCTCACAAAGTAAGTCACATTA
CATATCTCTTTTTACGCAATATGTTCCTCTATTTTTCCAACAGTGTCCTC
TTACTGAGCTACTTTGAAATCAATGGGTTTGAAGCAAGTTTCAACCTTTT
AATCATCTATACCAGAGATTGGTGCGAGTTTACCAGGAAGGGATGATCAG
AAATCTCAGTCTAAGAGAATTAATGCAACAACTTCAGATATCAATGAGAT
CAATTAGTGTGGTCAATCCTACCTGGTAAACTACAACCCAGTCTACACAT
AGTAACAGCAAAATTCAAAAAAAATCTTTCGCAATGTGGTTCTAGAATGG
ACATGAGCTCATTCAATGTTGGCGCTCTGATTTTCAACAAAGAACTTCCT
TTTGTCGTGGAAGTTGATTTTGACATTGATGATCACAAATTCTCCATTCG
TGGCAAAGGTGTTGGCAATGCTGAGAAAGGATTGATGGTTGGCAAATATG
TTGTTTCCGAAGGTGAATTACCATGCTCATGGTCAGCAATCACTCATAAT
TTCCAATACGGACAAGTGTAAGTAGAGCTTTATTTTAATCGTACCACAAC
TCTACTAGTGTCAGGTCCTTCACAATGTGAGCAAAATTGACTAGCTTAAT
TGTTAATTTGATCTAGATGGAATTTAAAGCTCGTTGGATAGAGTAGGACC
TATCCTTTTCATTTTGGGTGCTTTGATTTAAATATTAGCACAGAAAGAGT
TAAATATAATGTGTAAAACAAATCTTGGAAAGTTTCTCATTTACAAACGC
CAATGGTGCATTATTACACTATTATGAAAAAAGAATTATGTGTTTAAAAA
AGACTTTTCAAGGTCACTTAGACTCAATCGAAAATGTCAATTTTAAATTT
TAAATTTTCTCTTTCCCACGTTTTTAGTTGTTTCACCCGTTACCCAAAAG
ATATACCTGACCACATCAAGAGTCTGTTCCCAGAGGGTTACGTCCAAACA
CGACACAGTCATTTTGTCGATGATGGAGAGTATACGTCCGTACATACGTT
AACGTACGAAAACGGAGTGATTTACAACCGCGTCAAAGTTAACGGTGGCG
GTTTTAAACCCGATGGTAATGTTTTTGGCAAACGTCTTCGGGAAGTGGAA
CCTGATATCTGTTCAGTCTATTTCCCGGGAAAAGATGGATACAACTGTGA
ATTTGTCAAGGTACTGAAATTTTGTCAATTCTAGTAATTTCAGATACAGT
TCTACAGGGGTCTTATTTAGGCCCGGCGAACGGCACGAAAAGGCACGAAA
AAATTACAATTCGCCGTTCGAAAAATTCAGTTCACCATCTAAAGTACATA
TTTACGCTAATCAATGCACTGCGCTTGCTAAAAATTCGCCGGCCTAGAAT
CTAGAAATCGCCAGAGTTAATTCTTCATTCGCCAGCCTTCCAAAAACAAA
GCAAAACCCCTGGTCCTAGCATCTTTCAGGAAAATATTTTATATCTGTGG
AGATTAACTGGCAATAATTCAGTTTCAGTTGAATGTTTGAGATGAGAATA
GACTGCCATGTTCGCTAAGAGGTTTTTTTGAATAAATTTTGAATTGAGAA
ATTTTGTTAGTACAGTGGTGCAAAAAAAATNTCGATAAGAGGTTTTTTTG
AATAACTTTTGAATTGAGAAATTTTTTTAGTACAGTGGTGCAAAAAAAAC
GCATTTTATAACCAGTAGCGTGGTGGGTCGACTAAAATTCGGCCAAACCG
AAATTAGTAATCAGAGACTTTTTACACCCTATGTATTTCGGTGCCCCCAA
AGTAATTTGGCCGTTGGGGCCATCACGCTACTGTTTATAACATGTGTATG
ACCAAAGTTTAAGATTAGAAAATCTATATAAAAAGAGCTGAAACCTGTAA
ATATGTAGTCATCATATTCTGGTTTATATCCTTATCTTTCACAGCTTTCG
GAGACGGTAGATGGCGATTATCAAGCAATCCGTATTGACCAAGTGATCAG
ACCTCTTTCAGACGGACCCTCCCTTCCAATGACCAAGCTTTATCATCATT
ACAAATTCGAATACAGTAAGGATGCCAACGAAACGAGGGAACACATCATC
ATGAAGGAACAAGTCCACGCTAGTCACCATACCTCTAAATAATGAGATAT
CAACTTTTATTATTGGATTCTCAAGTTTAATGGTTGTTTGTCATTAATTA
TATGATATTGAAGTTTTATATATCTATTATAATCTGCTTGATTCATACTT
TATTTTCATAGTTGAAATAAATTTTATATATTTTGCACATGCTTATTGGA
ATTAAAATGTTTCATACGCCTCAAAAATTATTCCACCGTCAAATATCTAC
CCGAAATTTTGTGACAAGATTGAAACAGCCTACTCTGAATTTGTACTAAA
ATTCCTTTAATTAAAAATTTGTACGTAAAAATCTCAAAAAGGGCGTTTTT
TAAAAACATTCGGTAGAGTCTATTCCACGGTCAAAGGGAATCATGGGTAA
TCAGGACCCCGCGCTCAAATAAAAATTCTACGCCCCCTCAAATAAACACT
CTACGCCTCCTTTAGCATGTAGCTATTAGTATAATATCAAGAAAAGTGGA
TCTAGTAGTCTTCTAACTGATTTTGACCCGTTGCTACATTGACATTTGTA
CTCCAACAATAATAAAAAGGCAGAATGGGGTTCCCAGTCACACGGTATAA
CATTTATGACATTATGATTTTGAAAAGCTAAATGCTTTCAATCTTCTTAG
ATGTACAAATACATTCCTGTTTCTAATCTCGAGTTGGTGTTGAAAACCCA
ATGATTGGGTGTGAATCTTTATAGAAGAGAAATTGTTTGTGTTGAAACTT
TGAATAAAAAGCCTTCAATTCTTATTTAGAATTGTTCTGAATCTTGTTCT
GAAGCTTGGTGCTCATGCCACGCCCTATTTTGATATCTGTTGAACATAAT
AATCGATAGAAGGTATTTTCTTGAGCACTAGAGTTTATAATCAAATCAAA
TATAATTATAACCGAAAAATCGTTGTTTCTCTGGTGCAACATTTTACCCA
CCAGCAGGGATGATAAAACTTATTATGTTAGCTACAGCACCTGACCCCGA
GGATGTAGGTGAAATTTTAATCAGACCTGAAAGATGTAGATTTGCATTAA
AAAAAATATTATATGTTTTCAACGAAATTTTGAACCCCCAAAATCCTTTC
CCAGGGGCTAGTTTCATTACTTTTGATAGATAGGCTAATTTTTTTGGTCT
TTGAAGTTGACTCTCATTTTCGTTATAACCCCCAGAATGTAGGTTTGGTT
TTATGGCTTTAAATCTAGTATCAGTAAAATGTTGATATTTTTTCAATTGG
ATTAATTATAACCGTAGATTTTAGAAATATTTCATGCCAAAACAATCCTC
TAAAGAGCTTTTTGTTGTTCTGAAAATTGGATTTTTTTACTTTTTAACCC
CCAGAATGTAGGTGAAAAGATTCGGTTGTCGAGAGAAGAATTTCAGTACT
CATCGGAAATTTTTGTTCTCTAAGTGAAATTCGTACTTTAGAAATTTACT
CTGACAAAAAATTAACAAAGATATTAATTTTATCGTGCT Coding sequence (CDS) from alignment at sc0000183:105091..108779- >TCONS_00014225 ID=TCONS_00014225|Name=TCONS_00014225|organism=Clytia hemisphaerica|type=CDS|length=2106bp|location=Sequence derived from alignment at sc0000183:105091..108779- (Clytia hemisphaerica)
CTTTCGGAGACGGTAGATGGCGATTATCAAGCAATCCGTATTGACCAAGT
GATCAGACCTCTTTCAGACGGACCCTCCCTTCCAATGACCAAGCTTTATC
ATCATTACAAATTCGAATACAGTAAGGATGCCAACGAAACGAGGGAACAC
ATCATCATGAAGGAACAAGTCCACGCTAGTCACCATACCTCTAAATAATT
GTTTCACCCGTTACCCAAAAGATATACCTGACCACATCAAGAGTCTGTTC
CCAGAGGGTTACGTCCAAACACGACACAGTCATTTTGTCGATGATGGAGA
GTATACGTCCGTACATACGTTAACGTACGAAAACGGAGTGATTTACAACC
GCGTCAAAGTTAACGGTGGCGGTTTTAAACCCGATGGTAATGTTTTTGGC
AAACGTCTTCGGGAAGTGGAACCTGATATCTGTTCAGTCTATTTCCCGGG
AAAAGATGGATACAACTGTGAATTTGTCAAGATGGACATGAGCTCATTCA
ATGTTGGCGCTCTGATTTTCAACAAAGAACTTCCTTTTGTCGTGGAAGTT
GATTTTGACATTGATGATCACAAATTCTCCATTCGTGGCAAAGGTGTTGG
CAATGCTGAGAAAGGATTGATGGTTGGCAAATATGTTGTTTCCGAAGGTG
AATTACCATGCTCATGGTCAGCAATCACTCATAATTTCCAATACGGACAA
GTCTTTCGGAGACGGTAGATGGCGATTATCAAGCAATCCGTATTGACCAA
GTGATCAGACCTCTTTCAGACGGACCCTCCCTTCCAATGACCAAGCTTTA
TCATCATTACAAATTCGAATACAGTAAGGATGCCAACGAAACGAGGGAAC
ACATCATCATGAAGGAACAAGTCCACGCTAGTCACCATACCTCTAAATAA
TTGTTTCACCCGTTACCCAAAAGATATACCTGACCACATCAAGAGTCTGT
TCCCAGAGGGTTACGTCCAAACACGACACAGTCATTTTGTCGATGATGGA
GAGTATACGTCCGTACATACGTTAACGTACGAAAACGGAGTGATTTACAA
CCGCGTCAAAGTTAACGGTGGCGGTTTTAAACCCGATGGTAATGTTTTTG
GCAAACGTCTTCGGGAAGTGGAACCTGATATCTGTTCAGTCTATTTCCCG
GGAAAAGATGGATACAACTGTGAATTTGTCAAGATGGACATGAGCTCATT
CAATGTTGGCGCTCTGATTTTCAACAAAGAACTTCCTTTTGTCGTGGAAG
TTGATTTTGACATTGATGATCACAAATTCTCCATTCGTGGCAAAGGTGTT
GGCAATGCTGAGAAAGGATTGATGGTTGGCAAATATGTTGTTTCCGAAGG
TGAATTACCATGCTCATGGTCAGCAATCACTCATAATTTCCAATACGGAC
AAGTCTTTCGGAGACGGTAGATGGCGATTATCAAGCAATCCGTATTGACC
AAGTGATCAGACCTCTTTCAGACGGACCCTCCCTTCCAATGACCAAGCTT
TATCATCATTACAAATTCGAATACAGTAAGGATGCCAACGAAACGAGGGA
ACACATCATCATGAAGGAACAAGTCCACGCTAGTCACCATACCTCTAAAT
AATTGTTTCACCCGTTACCCAAAAGATATACCTGACCACATCAAGAGTCT
GTTCCCAGAGGGTTACGTCCAAACACGACACAGTCATTTTGTCGATGATG
GAGAGTATACGTCCGTACATACGTTAACGTACGAAAACGGAGTGATTTAC
AACCGCGTCAAAGTTAACGGTGGCGGTTTTAAACCCGATGGTAATGTTTT
TGGCAAACGTCTTCGGGAAGTGGAACCTGATATCTGTTCAGTCTATTTCC
CGGGAAAAGATGGATACAACTGTGAATTTGTCAAGATGGACATGAGCTCA
TTCAATGTTGGCGCTCTGATTTTCAACAAAGAACTTCCTTTTGTCGTGGA
AGTTGATTTTGACATTGATGATCACAAATTCTCCATTCGTGGCAAAGGTG
TTGGCAATGCTGAGAAAGGATTGATGGTTGGCAAATATGTTGTTTCCGAA
GGTGAATTACCATGCTCATGGTCAGCAATCACTCATAATTTCCAATACGG
ACAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014225-exon-sc0000183-1575043694:108643..108779 | TCONS_00014225-exon-sc0000183-1575043694:108643..108779 | Clytia hemisphaerica | exon |
| TCONS_00014225-exon-sc0000183-1575043694:108113..108334 | TCONS_00014225-exon-sc0000183-1575043694:108113..108334 | Clytia hemisphaerica | exon |
| TCONS_00014225-exon-sc0000183-1575043694:107470..107752 | TCONS_00014225-exon-sc0000183-1575043694:107470..107752 | Clytia hemisphaerica | exon |
| TCONS_00014225-exon-sc0000183-1575043694:105091..106735 | TCONS_00014225-exon-sc0000183-1575043694:105091..106735 | Clytia hemisphaerica | exon |
| TCONS_00014225-exon-sc0000183-1510915933:108643..108779 | TCONS_00014225-exon-sc0000183-1510915933:108643..108779 | Clytia hemisphaerica | exon |
| TCONS_00014225-exon-sc0000183-1510915933:108113..108334 | TCONS_00014225-exon-sc0000183-1510915933:108113..108334 | Clytia hemisphaerica | exon |
| TCONS_00014225-exon-sc0000183-1510915933:107470..107752 | TCONS_00014225-exon-sc0000183-1510915933:107470..107752 | Clytia hemisphaerica | exon |
| TCONS_00014225-exon-sc0000183-1510915933:105091..106735 | TCONS_00014225-exon-sc0000183-1510915933:105091..106735 | Clytia hemisphaerica | exon |
| TCONS_00014225-exon-sc0000183-1491911889:108643..108779 | TCONS_00014225-exon-sc0000183-1491911889:108643..108779 | Clytia hemisphaerica | exon |
| TCONS_00014225-exon-sc0000183-1491911889:108113..108334 | TCONS_00014225-exon-sc0000183-1491911889:108113..108334 | Clytia hemisphaerica | exon |
| TCONS_00014225-exon-sc0000183-1491911889:107470..107752 | TCONS_00014225-exon-sc0000183-1491911889:107470..107752 | Clytia hemisphaerica | exon |
| TCONS_00014225-exon-sc0000183-1491911889:105091..106735 | TCONS_00014225-exon-sc0000183-1491911889:105091..106735 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000183 | supercontig | sc0000183:105091..108779 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006091 | generation of precursor metabolites and energy |
| GO:0008218 | bioluminescence |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008218 |
bioluminescence |
| biological_process |
GO:0006091 |
generation of precursor metabolites and energy |
Blast
The following BLAST results are available for this feature:
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