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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014219 ID=TCONS_00014219|Name=TCONS_00014219|organism=Clytia hemisphaerica|type=transcript|length=10150bp protein sequence of TCONS_00014219-protein >TCONS_00014219-protein ID=TCONS_00014219-protein|Name=TCONS_00014219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1411bp MKNVANISTTIDPLKTPQSILKSRTKSKMQKIDFAVNTQQIDTSLTTESDRun BLAST on NCBI transcript from alignment at sc0000183:420828..438139+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014219 ID=TCONS_00014219|Name=TCONS_00014219|organism=Clytia hemisphaerica|type=transcript|length=17312bp|location=Sequence derived from alignment at sc0000183:420828..438139+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000183:420828..438139+ >TCONS_00014219 ID=TCONS_00014219|Name=TCONS_00014219|organism=Clytia hemisphaerica|type=CDS|length=25416bp|location=Sequence derived from alignment at sc0000183:420828..438139+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014219 vs. Swiss-Prot (Human)
Match: ELYS (Protein ELYS OS=Homo sapiens GN=AHCTF1 PE=1 SV=3) HSP 1 Score: 251.136 bits (640), Expect = 3.512e-66 Identity = 248/1043 (23.78%), Postives = 460/1043 (44.10%), Query Frame = 2
Query: 86 IPYSATVQECLDKDDNDVGLAKIKDG----GK--ISFIAKGSSLEIVNLQNGSRNASFSFDKETSNWRVSCFC-----QYQGKYLITLVDHSPNQPKGLLCVYDPGVSRIIKAIQLPYKPTSICLLKEYGGAGDKHNFISVLFKSMFGIAAVGTYAGHLYLIDLRGDDKQXXXXXXXXXXXXXXXXKKISRISEFRESAFNNGKHCCVDLNYEFCSYQGFRYVNPSNRLSKIFKTENSAVTALEFIPQTLTLAVGYEFGCYQLWSMQHLNMLFCTVFGNDVSAAVTHFVFQEPDDDPRSCCYLWVGRAALCTNNNVYMGPTTLSLYQILYEEKESRPGYGNIYKDYECVIKRFAHQLTADAYHLVDSQSPGSRIV-----------------TFKALGSSPTLCYVVWETCV--NDDLTCHLGIFDLNRWYQKQLPGSLRDAMYGRMEAVCPFFAFYSLTDIAEELLPSSILDVHIYEDSINTFQNVVGPQSEQFYWPSSSTFSLRCVSEASSVELDMLGIQRQIIAHSRKQGTESFVDAQSIVQNCWIAGLLQNT-ADIVRSS-EDKRNTDTLLSIHLEHDGINFITTCIKKWAHGSITHAGHSLKLIYDWAWNHVIHVKKNLDSLYINLFDTLSCH-MESEHKNTLKKIVMDLKQLVEIFRELQRADALTTQAGVQELKTREKITNYLHLYCNILLILVDVGLLPEPSSNIDTTKELPYPYDILSNYYEEQRKELTHSSKNMSSVEGNSLFID-LISKDFTQDRSSGTFDDDKPTMAEYPPQTIETMCQIFVENCRDDEQQVVLFYYWMLDVCECYDVLQKVKVSKE-FKDCLQLPADKSLLVESLWLIDHRLYKDAVEHL-ALVESKISSYYYTHIVRRLYHAKELHLLTTFCSCKEPMDFCTYDEXXXXXXXXXXXXXXDNAYKLQAKFNSKSKKALLFAYFVEQCKLNKVLGKLVTLAFTPEEEELLRRILKNSKDIQ--DYLLVFYLERGLYHEASSMTKDMRSSGKWQNLRSNLLQSNE----DRRLSKRTVLDGF 3088
+P+ + L +D+ + L + G GK ++ +A G LE+VN G R +++ F V Q + LI L + +LC+YD G+S+++KA+ LP + T+I + +GGA + + +FG+AAV T G + L+DL DD S L + + + RES G+H C F+ V+P+ +AV+ L +I +T LAVG+ G LW+M+ + + + V FQEP++DPR+CCYLW ++ + +V +L L Q+ + ++ +Y+ E +R+ LT + L Q+ ++++ +AL ++ W+ + + +LG+FD+NRWY Q+P SLR Y C +FA +SL + P ILD+ ++E S+N P EQF+ PS+ F C+ + V L G Q++ + +K G C +AGLL D+ SS + + +LS ++ + +T I++W ++ +L+ + +W WN V+ K+ D L + LFD SCH M+ + ++++ + L L + T+ G+ +L + +++ + Y ++L GLLPE + L Y Y ++ NYY +R++ S+ + L ID L+S+ +R + D+ +YPP ++ + +++ + + + + Y +LD+ Y K E F + + L++ WLIDH Y+ ++ L +K S+ ++ I++ E + +P + +++ L + V L + + A+ + ++ L + E C+ ++ L+ L FT E+E L + L++S +Q ++LLV +L+R Y A + Q L+ N++ + +R L++ ++LD +
Sbjct: 13 LPFPEVTLQALGEDE--ITLESVLRGKFAAGKNGLACLACGPQLEVVNSITGERLSAYRFSGVNEQPPVVLAVKEFSWQKRTGLLIGLEETE----GSVLCLYDLGISKVVKAVVLPGRVTAIEPIINHGGASASTQHLHPSLRWLFGVAAVVTDVGQILLVDLCLDDLSCNQNEVEASDLEVLTGIP-AEVPHIRESVMRQGRHLC------------FQLVSPT----------GTAVSTLSYISRTNQLAVGFSDGYLALWNMKSMKREYYIQLESG-QVPVYAVTFQEPENDPRNCCYLWAVQSTQDSEGDVL----SLHLLQLAFGNRKCLASGQILYEGLEYCEERYTLDLTGGMFPL-RGQTSNTKLLGCQSIEKFRSHGDREEGVNEALSPDTSVSVFTWQVNIYGQGKPSVYLGLFDINRWYHAQMPDSLRSGEYLHN---CSYFALWSLESVVSRTSPHGILDILVHERSLNRGVPPSYPPPEQFFNPSTYNFDATCLLNSGVVHLTCTGFQKETLTFLKKSGPSLNELIPDGYNRCLVAGLLSPRFVDVQPSSLSQEEQLEAILSAAIQTSSLGLLTGYIRRWITEEQPNSATNLRFVLEWTWNKVVLTKEEFDRLCVPLFDG-SCHFMDPQTIQSIQQCYLLLSNLNIVLSCFASEAREITERGLIDLSNKFVVSHLICQYAQVVLWFSHSGLLPEGIDDSVQLSRLCYNYPVIQNYYTSRRQKFERLSRG--KWNPDCLMIDGLVSQ--LGERIEKLWKRDEGGTGKYPPASLHAVLDMYLLDGVTEAAKHSITIYLLLDI--MYSFPNKTDTPIESFPTVFAISWGQVKLIQGFWLIDHNDYESGLDLLFHPATAKPLSWQHSKIIQAFMSQGEHRQALRYIQTMKPT-VSSGNDVILHLTVLLFNRCMVEAWNFLRQHCNRLNIEELLKHMYEVCQEMGLMEDLLKLPFTDTEQECLVKFLQSSASVQNHEFLLVHHLQRANYVPALKLN---------QTLKINVMNDRDPRLRERSLARNSILDQY 1000 The following BLAST results are available for this feature:
BLAST of TCONS_00014219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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