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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014199 ID=TCONS_00014199|Name=TCONS_00014199|organism=Clytia hemisphaerica|type=transcript|length=2350bpRun BLAST on NCBI protein sequence of TCONS_00014199-protein >TCONS_00014199-protein ID=TCONS_00014199-protein|Name=TCONS_00014199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp MSVANRFRQSITKALSLTDIDDENAGQTQQNNKITSESIIAKSVNLFSKFRun BLAST on NCBI transcript from alignment at sc0000183:275516..304512+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014199 ID=TCONS_00014199|Name=TCONS_00014199|organism=Clytia hemisphaerica|type=transcript|length=28997bp|location=Sequence derived from alignment at sc0000183:275516..304512+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000183:275516..304512+ >TCONS_00014199 ID=TCONS_00014199|Name=TCONS_00014199|organism=Clytia hemisphaerica|type=CDS|length=16269bp|location=Sequence derived from alignment at sc0000183:275516..304512+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014199 vs. Swiss-Prot (Human)
Match: SYN1 (Synapsin-1 OS=Homo sapiens GN=SYN1 PE=1 SV=3) HSP 1 Score: 291.967 bits (746), Expect = 1.305e-86 Identity = 133/304 (43.75%), Postives = 207/304 (68.09%), Query Frame = 3
Query: 309 LLVIDGNKEHEWSRVFKGCSLHGIYDVRVEQVALSDLEVKSSSEKGASISMRVVRNGAVIARSLRPDFVLFREYVKGGDLKTDHTNVLLGLMHGLVPSVNSLLTTFNFLQKPVVYAELLKIRQRLGKENFPLIEQNYYQSYYEMLLPPSLPVVIKVGSANSGLGKVCVASPRGFQDVASLVSLTNTYATSESFLEGKFDLRIYKFGQRYKVYKRKSLCDAWKTNTGTSTVEEIALTERYKNWADECAGLFDGLDILSVEVIHTKDDKEYIIEVNNIPPSICPDKREDDMKCIANVVLKKMEKEF 1220
LLVID +W++ FKG +HG D++VEQ SDL + + + G S+ M V+RNG + RSL+PDFVL R++ D+ ++++GL + +PSVNSL + +NF KP V+A+++++ ++LG E FPLI+Q +Y ++ EML + PVV+K+G A+SG+GKV V + FQD+AS+V+LT TYAT+E F++ K+D+R+ K GQ YK Y R S+ WKTNTG++ +E+IA+++RYK W D C+ +F GLDI +VE +H KD +++IIEV + D +++D + I +V+ KM +
Sbjct: 116 LLVID-EPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMAQAL 418 The following BLAST results are available for this feature:
BLAST of TCONS_00014199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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