|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014198 ID=TCONS_00014198|Name=TCONS_00014198|organism=Clytia hemisphaerica|type=transcript|length=2099bp
GGACGATTGTGGGTCGCGACGCTTAGTGCTATTCCTAGCGAAatttcaaa
aggCGGAGAAGCACGTtggaaataatcaaaacatGAACGTTACCATAGCA
TTTCAAGTGTGTAGCTCGAGAAAAATTTACTAAATCTGTAAATGGAGAAG
GGGTTTGTAACGATCCACATGAAAAAGGAAGAAGtgtgaaaatgaagatt
gaaaagatgaaaagGAAACTCGTTTAAAGAAGTCGTTAACTAAGTAGTGT
CACATTCTTAAAACAAAGAATAATCTAAAGAAAAAGAGGGCATACAAAGa
tatcatattttgaaaaaacatggTATTATTAAATTCTTTCAATATCAAAG
CAACTGCAACGTCTTCGTTATACAGTAGCAGTGAATCGTATACTGACGTG
GAATTTGATGACGATCATTTACCGATGAAACCAACGATCAGGACGGAAGA
CATGTTGGCTCGGTGTGTTAGAAAAAGACCAGTTGCAACGTTAACCGTCT
GTGTTTTGGTATTGTGGCTAATTATGCTTTGCATAGTGAGTTTAAAAACG
ATAGACTTAGAAATTGATCGTGTGGAGTTatttgaaatggaaaattttgg
gaacGAAAATCTTCAACAGGATCATGACAGAAAAACGGGCCACCATAATT
TGGAATTCAAACCAGAATTTAGAAATCATTTCTTAGACCTTAACTTCACG
CAACATTTAGCAGAatcgaaaacgaaagttgttgaaAATCTTGAAGTACC
ACCTATagaattgaaaagaaaagactTGATACGTGGTTGGTTGAACCAGA
AATCCGTTACCAAAAGCGATCAAAATAATACTGAGTCTTGGGATGGCGAG
GCGATGCTTAAAAACTGGTTGAGCGAGCGCAAAAATGTTGGCACTAGCAA
CCACACTTTTAATAAAGGAAATGAAATTCCGAATTCAACTTTACATAAAG
ATATTCTTCAGAAcccaatgaaaagaaaattgcaTTACCTTATTCCCAAT
AACACGAAATTGAGCTCAAATCAAACATTGCATTTGAAAAATGACGGAAA
GGATGACTCCGTGGCAAACATTCTGAATATAACTTTACTGGGAAAAAATG
TGACGTTACGAGATCTTAATACAATCTTACGAGATGAAAATATAACATTT
GGTCATGTAAAATCTAATTTACGAAACAATACATTCGTTTTACGGAAGCG
CAAGAAAGAATCGCATTTCCATTTGTCGAAAatagatttggaaaaattga
agaagaacaATAAATTTCGTGAAAATCAACAAAGTCAAACCGATAACACT
ATTCCCAATTTATTGCAAAGCGAGATCGGACCTATTTCTAATTATACAGA
TAAAGTGAAAGACAACGAAAACCTAAAAGCGaaacagaaaataaaattcA
CACTTCCGTACTGGGAAAAATCATCACTTTTTAAGGACGGTCACGGCAGG
ACGAGTGATTCGAATAAAGATACTACGAACCCAGAGGCTGTCCGTAATCC
GGTTGGTCCGGTCGCCGACTACGGTGAGGGTAATCCGAACCCGGAGCCTG
TCCGGGATTGGATGTTTTATTTCGGACATCGAGCACATGAAGATGATTGG
ACGTAACAATGAGTAGAAGATGAAATTTCACGTTTGTGTcgtatttataa
tttttaaaacctattaaaataaaaattgtaaatgaTAAATGATTGAAGTT
TTCCTTAGTACATTTTCTGCGCAGCGCTAGATCGACATCATAAAACGATC
ACCTAACGTCATAACGTAGACGTTAGATGACCAGATGCCGTATACATTAT
GCGCTACATGGATATAGTGGATTAGCCTACAAGATTTTCATCAAACTAAA
AAACTAAGAATGATTTCAAGACTGCTTTCGATTCCTCTGAAAAGTAAGCT
TTTCATTTCCCCGCTATTCcaacaaaatattcaaatttctttggCTTTAG
CTCCTCACCTCGCTCCTCACTACAATTTTGAAATAACATCAATCAAGGaa
attgaaaaagttatttaacatactttaatgggataaattttcgcggggat
taattttcgcggatttcgcggatttgggtgtcatccgcgaaaataagtc Run BLAST on NCBI protein sequence of TCONS_00014198-protein >TCONS_00014198-protein ID=TCONS_00014198-protein|Name=TCONS_00014198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp
MVLLNSFNIKATATSSLYSSSESYTDVEFDDDHLPMKPTIRTEDMLARCV
RKRPVATLTVCVLVLWLIMLCIVSLKTIDLEIDRVELFEMENFGNENLQQ
DHDRKTGHHNLEFKPEFRNHFLDLNFTQHLAESKTKVVENLEVPPIELKR
KDLIRGWLNQKSVTKSDQNNTESWDGEAMLKNWLSERKNVGTSNHTFNKG
NEIPNSTLHKDILQNPMKRKLHYLIPNNTKLSSNQTLHLKNDGKDDSVAN
ILNITLLGKNVTLRDLNTILRDENITFGHVKSNLRNNTFVLRKRKKESHF
HLSKIDLEKLKKNNKFRENQQSQTDNTIPNLLQSEIGPISNYTDKVKDNE
NLKAKQKIKFTLPYWEKSSLFKDGHGRTSDSNKDTTNPEAVRNPVGPVAD
YGEGNPNPEPVRDWMFYFGHRAHEDDWT Run BLAST on NCBI transcript from alignment at sc0000183:225718..228975+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014198 ID=TCONS_00014198|Name=TCONS_00014198|organism=Clytia hemisphaerica|type=transcript|length=3258bp|location=Sequence derived from alignment at sc0000183:225718..228975+ (Clytia hemisphaerica)
GGACGATTGTGGGTCGCGACGCTTAGTGCTATTCCTAGCGAAGtatgttt
tatttataagttgAAGGGGAAAGCATGGTCAACTAAGTCCTAAAAAAAAG
TACTAGgcattttttgcgtttttatcGATGCGTTTTTGTTGAGTAAGGTT
tgggtgagacaggggtgccaAAAATGAATACTTTTAATAAATTGAGGAAG
ATTGAAAGTAAATGGACAAACGATTCAGTTCATTGGTATATCGATAAAGT
GAGAgcgtttttttcaaaagcccacttcaatcttgaaaatttcaacaaaa
taacTACTGAATGACACATTAACAATCTAACGAATGATGCAATCTATTTG
TTGTGGTCAGGAGTTTATAGGAATACAAAGTTGACCcacaaatgtcaaat
tttggtcaaaacaaATAACATTGTACCATTCTGTTCTCCAAAGAAAACGC
CTGAGAACAAGACTCATACATTCAATCAGATACACCACAGTAATTATAGA
CAGCAGGACAAAGGGTCTCTTTTACTGTTTATAagattcaaatttgattc
ttgcTCGAGCCTTTGATTCTAAGATAAATATATGGCGTGTTCCTATAGAA
AACTATTTTAGCTCTCACAAGCTGGAAACTAAACGTGTTTGACATACAAC
ATATTTTTCTACAATTTAATGTTTTTAGGGATAATATTACATTTTCTCAT
TCTTAAACAGGCCCAGCACATTATTTTATGGTTTTGATGATATTTTACCA
CAATGTCTTGTTGTTATATGTTTTTATAAAGTTCAGGATTACATCTCTTG
ATGGGAGGTCGATTATGGAGTCGATTGGTCGATGAGTTTACTTAAATTTA
AACTATTCACTGGCTCTGTGTGGCTGATTAGACTTTCTATTTTTTGATGA
GGCTTTTGCCAGCGATACTTTATTCGGGGAATTCAAGAATTTCGGTACTT
TGTTAAGGGTTGTTTAAAGAGTTTTCTAAAAGGAAATTCGAACTTGGTTA
TATAAAATTTCGGATAAGATAATATTAGAATTTGTGAGTCTTGAGTATTT
GGTATAtttgaattatttcaaaatctttcttcCAAAATGTAGACTCGATG
CCAGGAATGTTTTCGTATGTTTATATTcgtttttagatttcaaaaggCGG
AGAAGCACGTtggaaataatcaaaacatGAACGTTACCATAGCATTTCAA
GTGTGTAGCTCGAGAAAAATTTACTAAATCTGTAAATGGAGAAGGGGTTT
GTAACGATCCACATGAAAAAGGAAGAAGtgtgaaaatgaagattgaaaag
atgaaaagGAAACTCGTTTAAAGAAGTCGTTAACTAAGTAGTGTCACATT
CTTAAAACAAAGAATAATCTAAAGAAAAAGAGGGCATACAAAGatatcat
attttgaaaaaacatggTATTATTAAATTCTTTCAATATCAAAGCAACTG
CAACGTCTTCGTTATACAGTAGCAGTGAATCGTATACTGACGTGGAATTT
GATGACGATCATTTACCGATGAAACCAACGATCAGGACGGAAGACATGTT
GGCTCGGTGTGTTAGAAAAAGACCAGTTGCAACGTTAACCGTCTGTGTTT
TGGTATTGTGGCTAATTATGCTTTGCATAGTGAGTTTAAAAACGATAGAC
TTAGAAATTGATCGTGTGGAGTTatttgaaatggaaaattttgggaacGA
AAATCTTCAACAGGATCATGACAGAAAAACGGGCCACCATAATTTGGAAT
TCAAACCAGAATTTAGAAATCATTTCTTAGACCTTAACTTCACGCAACAT
TTAGCAGAatcgaaaacgaaagttgttgaaAATCTTGAAGTACCACCTAT
agaattgaaaagaaaagactTGATACGTGGTTGGTTGAACCAGAAATCCG
TTACCAAAAGCGATCAAAATAATACTGAGTCTTGGGATGGCGAGGCGATG
CTTAAAAACTGGTTGAGCGAGCGCAAAAATGTTGGCACTAGCAACCACAC
TTTTAATAAAGGAAATGAAATTCCGAATTCAACTTTACATAAAGATATTC
TTCAGAAcccaatgaaaagaaaattgcaTTACCTTATTCCCAATAACACG
AAATTGAGCTCAAATCAAACATTGCATTTGAAAAATGACGGAAAGGATGA
CTCCGTGGCAAACATTCTGAATATAACTTTACTGGGAAAAAATGTGACGT
TACGAGATCTTAATACAATCTTACGAGATGAAAATATAACATTTGGTCAT
GTAAAATCTAATTTACGAAACAATACATTCGTTTTACGGAAGCGCAAGAA
AGAATCGCATTTCCATTTGTCGAAAatagatttggaaaaattgaagaaga
acaATAAATTTCGTGAAAATCAACAAAGTCAAACCGATAACACTATTCCC
AATTTATTGCAAAGCGAGATCGGACCTATTTCTAATTATACAGATAAAGT
GAAAGACAACGAAAACCTAAAAGCGaaacagaaaataaaattcACACTTC
CGTACTGGGAAAAATCATCACTTTTTAAGGACGGTCACGGCAGGACGAGT
GATTCGAATAAAGATACTACGAACCCAGAGGCTNACTTTTTAAGGACGGT
CACGGCAGGACGAGTGATTCGAATAAAGATACTACAAACCCAGAGGCTGT
CCGTAATCCGGTTGGTCCGGTCGCCGACTACGGTGAGGGTAATCCGAACC
CGGAGCCTGTCCGGGATTGGATGTTTTATTTCGGACATCGAGCACATGAA
GATGATTGGACGTAACAATGAGTAGAAGATGAAATTTCACGTTTGTGTcg
tatttataatttttaaaacctattaaaataaaaattgtaaatgaTAAATG
ATTGAAGTTTTCCTTAGTACATTTTCTGCGCAGCGCTAGATCGACATCAT
AAAACGATCACCTAACGTCATAACGTAGACGTTAGATGACCAGATGCCGT
ATACATTATGCGCTACATGGATATAGTGGATTAGCCTACAAGATTTTCAT
CAAACTAAAAAACTAAGAATGATTTCAAGACTGCTTTCGATTCCTCTGAA
AAGTAAGCTTTTCATTTCCCCGCTATTCcaacaaaatattcaaatttctt
tggCTTTAGCTCCTCACCTCGCTCCTCACTACAATTTTGAAATAACATCA
ATCAAGGaaattgaaaaagttatttaacatactttaatgggataaatttt
cgcggggattaattttcgcggatttcgcggatttgggtgtcatccgcgaa
aataagtc Coding sequence (CDS) from alignment at sc0000183:225718..228975+ >TCONS_00014198 ID=TCONS_00014198|Name=TCONS_00014198|organism=Clytia hemisphaerica|type=CDS|length=2574bp|location=Sequence derived from alignment at sc0000183:225718..228975+ (Clytia hemisphaerica)
atggTATTATTAAATTCTTTCAATATCAAAGCAACTGCAACGTCTTCGTT
ATACAGTAGCAGTGAATCGTATACTGACGTGGAATTTGATGACGATCATT
TACCGATGAAACCAACGATCAGGACGGAAGACATGTTGGCTCGGTGTGTT
AGAAAAAGACCAGTTGCAACGTTAACCGTCTGTGTTTTGGTATTGTGGCT
AATTATGCTTTGCATAGTGAGTTTAAAAACGATAGACTTAGAAATTGATC
GTGTGGAGTTatttgaaatggaaaattttgggaacGAAAATCTTCAACAG
GATCATGACAGAAAAACGGGCCACCATAATTTGGAATTCAAACCAGAATT
TAGAAATCATTTCTTAGACCTTAACTTCACGCAACATTTAGCAGAatcga
aaacgaaagttgttgaaAATCTTGAAGTACCACCTATagaattgaaaaga
aaagactTGATACGTGGTTGGTTGAACCAGAAATCCGTTACCAAAAGCGA
TCAAAATAATACTGAGTCTTGGGATGGCGAGGCGATGCTTAAAAACTGGT
TGAGCGAGCGCAAAAATGTTGGCACTAGCAACCACACTTTTAATAAAGGA
AATGAAATTCCGAATTCAACTTTACATAAAGATATTCTTCAGAAcccaat
gaaaagaaaattgcaTTACCTTATTCCCAATAACACGAAATTGAGCTCAA
ATCAAACATTGCATTTGAAAAATGACGGAAAGGATGACTCCGTGGCAAAC
ATTCTGAATATAACTTTACTGGGAAAAAATGTGACGTTACGAGATCTTAA
TACAATCTTACGAGATGAAAATATAACATTTGGTCATGTAAAATCTAATT
TACGAAACAATACATTCGTTTTACGGAAGCGCAAGAAAGAATCGCATTTC
CATTTGTCGAAAatagatttggaaaaattgaagaagaacaATAAATTTCG
TGAAAATCAACAAAGTCAAACCGATAACACTATTCCCAATTTATTGCAAA
GCGAGATCGGACCTATTTCTAATTATACAGATAAAGTGAAAGACAACGAA
AACCTAAAAGCGaaacagaaaataaaattcACACTTCCGTACTGGGAAAA
ATCATCACTTTTTAAGGACGGTCACGGCAGGACGAGTGATTCGAATAAAG
ATACTACGAACCCAGAGGCTGTCCGTAATCCGGTTGGTCCGGTCGCCGAC
TACGGTGAGGGTAATCCGAACCCGGAGCCTGTCCGGGATTGGATGTTTTA
TTTCGGACATCGAGCACATGAAGATGATTGGACGTAAatggTATTATTAA
ATTCTTTCAATATCAAAGCAACTGCAACGTCTTCGTTATACAGTAGCAGT
GAATCGTATACTGACGTGGAATTTGATGACGATCATTTACCGATGAAACC
AACGATCAGGACGGAAGACATGTTGGCTCGGTGTGTTAGAAAAAGACCAG
TTGCAACGTTAACCGTCTGTGTTTTGGTATTGTGGCTAATTATGCTTTGC
ATAGTGAGTTTAAAAACGATAGACTTAGAAATTGATCGTGTGGAGTTatt
tgaaatggaaaattttgggaacGAAAATCTTCAACAGGATCATGACAGAA
AAACGGGCCACCATAATTTGGAATTCAAACCAGAATTTAGAAATCATTTC
TTAGACCTTAACTTCACGCAACATTTAGCAGAatcgaaaacgaaagttgt
tgaaAATCTTGAAGTACCACCTATagaattgaaaagaaaagactTGATAC
GTGGTTGGTTGAACCAGAAATCCGTTACCAAAAGCGATCAAAATAATACT
GAGTCTTGGGATGGCGAGGCGATGCTTAAAAACTGGTTGAGCGAGCGCAA
AAATGTTGGCACTAGCAACCACACTTTTAATAAAGGAAATGAAATTCCGA
ATTCAACTTTACATAAAGATATTCTTCAGAAcccaatgaaaagaaaattg
caTTACCTTATTCCCAATAACACGAAATTGAGCTCAAATCAAACATTGCA
TTTGAAAAATGACGGAAAGGATGACTCCGTGGCAAACATTCTGAATATAA
CTTTACTGGGAAAAAATGTGACGTTACGAGATCTTAATACAATCTTACGA
GATGAAAATATAACATTTGGTCATGTAAAATCTAATTTACGAAACAATAC
ATTCGTTTTACGGAAGCGCAAGAAAGAATCGCATTTCCATTTGTCGAAAa
tagatttggaaaaattgaagaagaacaATAAATTTCGTGAAAATCAACAA
AGTCAAACCGATAACACTATTCCCAATTTATTGCAAAGCGAGATCGGACC
TATTTCTAATTATACAGATAAAGTGAAAGACAACGAAAACCTAAAAGCGa
aacagaaaataaaattcACACTTCCGTACTGGGAAAAATCATCACTTTTT
AAGGACGGTCACGGCAGGACGAGTGATTCGAATAAAGATACTACGAACCC
AGAGGCTGTCCGTAATCCGGTTGGTCCGGTCGCCGACTACGGTGAGGGTA
ATCCGAACCCGGAGCCTGTCCGGGATTGGATGTTTTATTTCGGACATCGA
GCACATGAAGATGATTGGACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014198-exon-sc0000183-1491911889:225718..225759 | TCONS_00014198-exon-sc0000183-1491911889:225718..225759 | Clytia hemisphaerica | exon |
| TCONS_00014198-exon-sc0000183-1510915933:225718..225759 | TCONS_00014198-exon-sc0000183-1510915933:225718..225759 | Clytia hemisphaerica | exon |
| TCONS_00014198-exon-sc0000183-1575043694:225718..225759 | TCONS_00014198-exon-sc0000183-1575043694:225718..225759 | Clytia hemisphaerica | exon |
| TCONS_00014198-exon-sc0000183-1491911889:226854..228297 | TCONS_00014198-exon-sc0000183-1491911889:226854..228297 | Clytia hemisphaerica | exon |
| TCONS_00014198-exon-sc0000183-1510915933:226854..228297 | TCONS_00014198-exon-sc0000183-1510915933:226854..228297 | Clytia hemisphaerica | exon |
| TCONS_00014198-exon-sc0000183-1575043694:226854..228297 | TCONS_00014198-exon-sc0000183-1575043694:226854..228297 | Clytia hemisphaerica | exon |
| TCONS_00014198-exon-sc0000183-1491911889:228363..228975 | TCONS_00014198-exon-sc0000183-1491911889:228363..228975 | Clytia hemisphaerica | exon |
| TCONS_00014198-exon-sc0000183-1510915933:228363..228975 | TCONS_00014198-exon-sc0000183-1510915933:228363..228975 | Clytia hemisphaerica | exon |
| TCONS_00014198-exon-sc0000183-1575043694:228363..228975 | TCONS_00014198-exon-sc0000183-1575043694:228363..228975 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000183 | supercontig | sc0000183:225718..228975 + |
Blast
The following BLAST results are available for this feature:
|
