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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014196 ID=TCONS_00014196|Name=TCONS_00014196|organism=Clytia hemisphaerica|type=transcript|length=2800bpRun BLAST on NCBI protein sequence of TCONS_00014196-protein >TCONS_00014196-protein ID=TCONS_00014196-protein|Name=TCONS_00014196-protein|organism=Clytia hemisphaerica|type=polypeptide|length=620bp MAQENIETKSKRGTWGHKSEFILASIGLAVGLGNIWRFPYLCQRNGGGAFRun BLAST on NCBI transcript from alignment at sc0000183:218382..225628+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014196 ID=TCONS_00014196|Name=TCONS_00014196|organism=Clytia hemisphaerica|type=transcript|length=7247bp|location=Sequence derived from alignment at sc0000183:218382..225628+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000183:218382..225628+ >TCONS_00014196 ID=TCONS_00014196|Name=TCONS_00014196|organism=Clytia hemisphaerica|type=CDS|length=16767bp|location=Sequence derived from alignment at sc0000183:218382..225628+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014196 vs. Swiss-Prot (Human)
Match: S6A12 (Sodium- and chloride-dependent betaine transporter OS=Homo sapiens GN=SLC6A12 PE=1 SV=2) HSP 1 Score: 385.185 bits (988), Expect = 4.785e-121 Identity = 237/607 (39.04%), Postives = 349/607 (57.50%), Query Frame = 1
Query: 388 TWVKVHLRTMAQENIETKSKRGTWGHKSEFILASIGLAVGLGNIWRFPYLCQRNGGGAFLIPYVIFMVIEGLPIFFIEFAIGQRFRTSSVNAWAKVSPALKGIGWSCVCVSTFVCIYYIVVLSWCIYYFLMSFTSDLPWDIEQTCLNNPQYQTILNNVAKYKGNATELPKWIDAMDSFSDCCVRDPAQWYFYQRVLRVSSGIEDTGVGLNVNLVGCLILAWIITYLCXXXXXXXXXXXXYFTAVFPYIVLLIFFFRGVTLDNAKNGIKTFFNPDWSKLEDPQIWMDAATQIFFTLSLGFGALVAFASYMPIKNNCIRDAYTVVFINCGTSVFAGVVVFSILGYRELKTGLPADKVS-SGPGLAFMAFSDAILLMKGSPFWAVMFFLMLILLGIDSEFGVLEATITPFYDSGVVKMRK----EVFTAIFAFVMFLIGLCLVAGNGFYIFQIFDDFSVS-LPLLFIAFFQCIGVTWIYGSDNFANDIEYMTGSRPNIFWMLCWKYISPVALLVVFITNINTLSKDTAKYAVYTGCPSDPLHYQHAGTSEWLTKVEYPPWGQFLIVLVVGVSFLPILIYLFLDLYRRPGAWKAGIKKRFFTSWHEYLPDP 2190
+WV + QE+ + RG W +K EF+L+ G +GLGN+WRFPYLC +NGGGAF IPY IF + G+P+FF+E A+GQ SV AW K+ P +GIG + V + +++ +YYI++L+W ++Y SFTS+LPW N LN + G T P ++F+ P ++ +RVL ++SGI D G L L CL+LAW+I Y C+ KG+KS+GKVVYFTA FPY++L+I RGVTL A GI + PD +L+DPQ+WMDA TQIFF+ ++ G L A SY NNC +D + F+N TS AG VVFSILG+ + G+P +V+ SGPGLAF+AF A+ +M S W+ +FF+MLI LG+DS+F +E +T D ++RK E+ A + +LIGL LV G YIFQ+FD ++ S + LLF++ F+ + ++W+YG+D F ++IE M G RP + W +++P L F+ +LSK T PL Y + YPPWG + + S + + +++ + L + G ++ +++ + LP P
Sbjct: 16 SWVPEEGEKLDQEDEDQVKDRGQWTNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYFIFFFVCGIPVFFLEVALGQYTSQGSVTAWRKICPLFQGIGLASVVIESYLNVYYIIILAWALFYLFSSFTSELPWTTCNNFWNTEHCTDFLN----HSGAGTVTP-----FENFT-----SPVMEFWERRVLGITSGIHDLG-SLRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLVILLIRGVTLPGAYQGIIYYLKPDLFRLKDPQVWMDAGTQIFFSFAICQGCLTALGSYNKYHNNCYKDCIALCFLNSATSFVAGFVVFSILGFMSQEQGVPISEVAESGPGLAFIAFPKAVTMMPLSQLWSCLFFIMLIFLGLDSQFVCVECLVTASIDMFPRQLRKSGRRELLILTIAVMCYLIGLFLVTEGGMYIFQLFDYYASSGICLLFLSLFEVVCISWVYGADRFYDNIEDMIGYRPWPLVKISWLFLTPGLCLATFLF---SLSKYT------------PLKYNNVYV--------YPPWGYSIGWFLALSSMVCVPLFVVITLLKTRGPFRKRLRQ--LITPDSSLPQP 582 The following BLAST results are available for this feature:
BLAST of TCONS_00014196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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