TCONS_00014194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014194
Unique NameTCONS_00014194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1124

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014194 ID=TCONS_00014194|Name=TCONS_00014194|organism=Clytia hemisphaerica|type=transcript|length=1124bp
ttaaaaTGAGGTATTAGAATATTTACtataaaatacattttaaaaattta
gagTACAGTAGtatatttcatttcttttgcaTGATCGGCAAACTAAAAAT
GGTGACgaactcgaaaaatatttatgataTTGTATTCACAACCGTCTGAT
GACTACTATCTGTATTTTTATCGAGGGTTTGTTTGtgttttcaagttttt
ctgttcgttcaaatattgaaaaatcaatCTCTCCTTGTTTCGCTTGTAAT
TCCTGTCCAAAAAAGTCGATCTTTTTATCTTATGCTCCATACGATCACTC
AGAAATTTAATTTCATACTCGATTCCAGACTTGAGATATTCTTGCTCCTC
GTTTTTTCTTGCGTCATTCTCTGTATTTTCAGTTTCTTTTTTCTCGTTTG
ACTCTCTCTTATTGTCGCCATTCATTTTTATATCATTTCGCGCTGCGGCG
ACTACAGAAGAAAAAGTCTTAATCTCAGGTAGTGAGAACTTATCACTATC
TCTACTCGTCACCACAGTACTAGAGCACGAATGTAAATCCATGTGTTTGA
ACCAGTTTGACATGTGTCGTCCATAGATCAATTCCCGCTGATAATATTTC
AAGCGTTCTCTGGTCTTCTTCATCTCTTTATCCATAGTTTCAAGTTCATA
TTTGAAACGTTGCTCATGCTCTATATGTTTCTTCTCGATCTCTGTTTTAC
TGTTTTTCAAAATACGACTCAATTTCTTGTTCAGGTGTTCTTTCTGTGCG
TCTCTTCCCGAACGGCATTCTGGGTAGCTGATCGGATTCTGGGTACTGGA
ATGTGTATTCGATACTTTGATTTTTCGTCTTGCCGCCATTTTCAACACGA
ACTCTTTCGTTTTAATGACCTCCAATTATCAACAACGTAATCACCCTTTT
CAAAGTCGTTTAATTATAGCTCCTCCtcattccaaaatattttttttgtt
cacgATAAGAAAGTTAAGCCCTCCTTTTCTTCTCAGCAATGATACATATT
TTCTTCGACTTCCCCTTTTAATTTAACATGTTTTAAAAACTAGAGAACAG
AATAAGAGAGATATATACAGTGGCAGATTTTTTCTACTCTTTTGCGTATA
TATTTGATTACTTTAACACAGACC
Run BLAST on NCBI

transcript from alignment at sc0000183:206756..208076+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014194 ID=TCONS_00014194|Name=TCONS_00014194|organism=Clytia hemisphaerica|type=transcript|length=1321bp|location=Sequence derived from alignment at sc0000183:206756..208076+ (Clytia hemisphaerica)
ttaaaaTGAGGTATTAGAATATTTACtataaaatacattttaaaaattta
gagTACAGTAGtatatttcatttcttttgcaTGATCGGCAAACTAAAAAT
GGTGACgaactcgaaaaatatttatgataTTGTATTCACAACCGTCTGAT
GACTACTATCTGTATTTTTATCGAGGGTTTGTTTGtgttttcaagttttt
ctgttcgttcaaatattgaaaaatcaatCTCTCCTTGTTTCGCTTGTAAT
TCCTGTCCAAAAAAGTCGATCTTTTTATCTTATGCTCCATACGATCACTC
AGAAATTTAATTTCATACTCGATTCCAGACTTGAGATATTCTTGCTCCTC
GTTTTTTCTTGCGTCATTCTCTGTATTTTCAGTTTCTTTTTTCTCGTTTG
ACTCTCTCTTATTGTCGCCATTCATTTTTATATCATTTCGCGCTGCGGCG
ACTACAGAAGAAAAAGTCTTAATCTCAGGTAGTGAGAACTTATCACTATC
TCTACTCGTCACCACNTTCAGTTTCTTTTTTCTCGTTTGACTCTCTCTTA
TTGTCGCCATTCATTTTTATATCATTTCGCGCTGCGGCGACTACAGAAGA
AAAAGTCTTAATCTCAGGTAGTGAGAACTTATCACTATCTCTACTCGTCA
CCACAGTACTAGAGCACGAATGTAAATCCATGTGTTTGAACCANATCTCT
ACTCGTCACCACAGTACTAGAGCACGAATGTAAATCCATGTGTTTGAACC
AGTTTGACATGTGTCGTCCATAGATCAATTCCCGCTGATAATATTTCAAG
CGTTCTCTGGTCTTCTTCATCTCTTTATCCATAGTTTCAAGTTCATATTT
GAAACGTTGCTCATGCTCTATATGTTTCTTCTCGATCTCTGTTTTACTGT
TTTTCAAAATACGACTCAATTTCTTGTTCAGGTGTTCTTTCTGTGCGTCT
CTTCCCGAACGGCATTCTGGGTAGCTGATCGGATTCTGGGTACTGGAATG
TGTATTCGATACTTTGATTTTTCGTCTTGCCGCCATTTTCAACACGAACT
CTTTCGTTTTAATGACCTCCAATTATCAACAACGTAATCACCCTTTTCAA
AGTCGTTTAATTATAGCTCCTCCtcattccaaaatattttttttgttcac
gATAAGAAAGTTAAGCCCTCCTTTTCTTCTCAGCAATGATACATATTTTC
TTCGACTTCCCCTTTTAATTTAACATGTTTTAAAAACTAGAGAACAGAAT
AAGAGAGATATATACAGTGGCAGATTTTTTCTACTCTTTTGCGTATATAT
TTGATTACTTTAACACAGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007946XLOC_007946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014194-exon-sc0000183-1491911889:206756..207270TCONS_00014194-exon-sc0000183-1491911889:206756..207270Clytia hemisphaericaexon
TCONS_00014194-exon-sc0000183-1510915933:206756..207270TCONS_00014194-exon-sc0000183-1510915933:206756..207270Clytia hemisphaericaexon
TCONS_00014194-exon-sc0000183-1575043694:206756..207270TCONS_00014194-exon-sc0000183-1575043694:206756..207270Clytia hemisphaericaexon
TCONS_00014194-exon-sc0000183-1491911889:207468..208076TCONS_00014194-exon-sc0000183-1491911889:207468..208076Clytia hemisphaericaexon
TCONS_00014194-exon-sc0000183-1510915933:207468..208076TCONS_00014194-exon-sc0000183-1510915933:207468..208076Clytia hemisphaericaexon
TCONS_00014194-exon-sc0000183-1575043694:207468..208076TCONS_00014194-exon-sc0000183-1575043694:207468..208076Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:206756..208076 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.193867	0.226862	2.28287	1.71802	37.9612	31.361	17.6467	18.3874	10.6516	11.1702	7.46372	6.04257	0.825185	0.856963	0.748574	0.259902	2.73607	3.25189	1.36016	1.1214	4.12373	3.78511	3.06753	4.72888	5.57834	7.87648	24.0311	18.8945	0.258213	0.570003
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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