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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014186 ID=TCONS_00014186|Name=TCONS_00014186|organism=Clytia hemisphaerica|type=transcript|length=1869bp
GCGCAGCAGTAATTAATCCCTATCATTAATATTGCAATGCTAATTAACTA
ATTATCGCCTTAAAGGTTATTATGGTTTGTTtgtcaaatcaaaataaacc
cgAGTAATCTAAAACGAAAAGTCTAAAAATTGTCCTACGTCGAGGATTAA
GTCAGACAATGTCGCACCCAGTCCTTCTAAGACACTGCTGCGAAACTGTG
GCTTGTATTGTTTGGAGTCTGGTGTTGAGAGTGCGGAAAGCAATTTTGAT
GCGATTAGAAGAAAGAGTATCAACAGACATGCTTGGAAGGATATGAGGAA
CAACAAGTAGTAAAGATGATGAAACCAACCGTATAATTTTATAAGACCAA
TACCAATATCCGACTCCAAGATGatgggaaaaatgaaattcgCTGAGCTG
GCACGAAAAGCGAACGCCAGACCAATACAAGAAGAACAGGAGACAGCAGA
AATTGATCAAGAAGAAAAGATCGAAGAAAAACCACGTACTGAAACCTTTG
CAGATCTTCCTCCTTTAGATGAGAACAAGTATGTTCTGGATGAAGCTTAT
TTCATACCGATATCCACCATCAAAGAAAAGGCTATAAAACCGAAAAAACC
GGTCGCCCGAAAAATGTCTGGATTCACACGGATGGGATCATATAAGAGCG
CGCCGTTGAAAACAACCGACGAGTCTATTCCTTTAATGGATAGTTGTAGC
AGTGATACCAAAAGTACAGGGGTTTCCAGTGAAGGCAGTAACGAAGCTGT
CGAGGAGAAGGAGGGGAAATCCCCAGCGAAATCAGGGAATATTTTTGCCA
GGAGAAAGATAACTGAAGCAGCTGATCCGACACAATTAAAGGAAAACCCT
TTCCATCGCCGTGGCGTTGTTATCGATCCATTTCAACAAAATAATATTCG
ATCAAAATTAAAGACCAGATTAAGAAAGATCGTGGACGAAAGATTGACTG
TGAAACAGATTTTCTCGAGATATGTTGAAAGTTCAACTCTTCACGGATTC
TTGTATACTTGTTCAGATACTTATATCATAAGGAGATTCTTATGGGCGTG
CTTAATGATCTTAGGTGCAATATACTTTTTGGTCAAACTAAGAGAAGGTA
TCATAGAGTACTTCGAATATCCGTTCAGCACATTGTCGATCATTGACTTT
CCAGATATATTGGAGTTCCCAACAATCAGTTTCTGTTTAGTCAACGGATA
CAAACATAAAGAACTCAATGAGAGTAGATTAGGACCTTTATTACAAAATG
GTAGATTTCCTATCCATTCAAGTTGGTTGGACCCTGGGTACGACATCCCC
GGTGATGAACTGGTTGAGGTGATGAATAATATCTCATTCACACCTTCAGA
TGTTTTCGAGGAATGTGATTGGATAAAACGAGACACAGCTCACCCATCGG
TGCCACCCAATAAATGCGACGCTGCAAATTTCACCACATTCTTCAATAAA
CAAAACGAGAAATGTTTCATGTTGAATTCAAACCAAAAAGGTCACCCTTT
ATTAAAAGTCAATCACGAAGGTTTAAAATACGGCTACGAAGGACTTTTTG
ATATGAGGACTTCGAGCGCCTTTTTGACACACCCCTTTGCTGGATTGAGG
GTGTATATTCATTCTCACCACGAACCTGCAGGCTCAGGATCAAGCTTCTT
GTTGTCGCCTGGTTTCCATTACTACGTCAAGATGGACATGCACGAGACAC
ACAATCTTGAACCTCCGTACAGTACACAGTGTGGTGAAATccaattaaaa
tatttcgatACATACAATCAGAAAGCATGTTTATTAGAAAAGTTGACGGA
TTATGTTGGTGAAAAATGCGGATGTAGAGAACCATTCATGGCAGAAAACG
GTTTGCCGAGCTGTTCACT Run BLAST on NCBI transcript from alignment at sc0000183:59959..65235+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014186 ID=TCONS_00014186|Name=TCONS_00014186|organism=Clytia hemisphaerica|type=transcript|length=5277bp|location=Sequence derived from alignment at sc0000183:59959..65235+ (Clytia hemisphaerica)
GCGCAGCAGTAATTAATCCCTATCATTAATATTGCAATGCTAATTAACTA
ATTATCGCCTTAAAGGTTATTATGGTTTGTTtgtcaaatcaaaataaacc
cgAGTAATCTAAAACGAAAAGTCTAAAAATTGTCCTACGTCGAGGATTAA
GTCAGACAATGTCGCACCCAGTCCTTCTAAGACACTGCTGCGAAACTGTG
GCTTGTATTGTTTGGAGTCTGGTGTTGAGAGTGCGGAAAGCAATTTTGAT
GCGATTAGAAGAAAGAGTATCAACAGACATGCTTGGAAGGATATGAGGAA
CAACAAGTAGTAAAGATGATGAAACCAACCGTATAATTTTATAAGGTAag
atttttgtatgttttttatGTTTCGAACCTGTTTACTCTATAAAAACCTT
ATATACACCACAGTATACTCTACCTTTTAAATTTGAAGAAGTCCATAGGA
TTCTTAAAATTTCTTTCCCCTAGATTTTGCTGCCAATTTACTGACTCGAA
CAATTTTGGAGTTTTCCAGCTGGTATATAAAATACACGAAATATGATTTC
TATATTACCGGACTAGGATGTATCTGTTATGAAAGGAATATTGACCAGAG
TTAACaaacttacacgttttttttataagaacatccaaaatttttgaagc
cttcggatgttcttaactcttttagttttaagcctaaaaatgttcttaac
atatccttattttcaccattttttgagaatttttctccattttcttGTAC
attgggtattttagagtcctcaaagccttgtgttctttaaaagaaaaaac
gtgtactgttatattagctctagtttagacggccgactttctgccctgcc
tattctaattgttagagtaggcagaaagagggcacaaagttggttgttaa
aatctttgcttgacaAGGTTTgattgaagacattgcattgacgtcaaaag
agggctatgcatcactttagacagccaactttatgccctctttaattcac
aattagaataggcagggcaaaaagtgggccgtctaaactagagctaataG
TTCACTATTTTGACAAAaacagtctgtaaaatactgtACAGTTCAGCTAG
CTGAACTGAGATTTCACAAGTTTGCGTATAGACTGGTTagtaaattttcc
aaaaaaccaaaccTTTCAGTTTCTTTTATCATTTGAGTGAATAGGGTGAC
TTTCAGCTAAATTCTCTTAGCTCTTAGCTCAACGGAATTCCTTATTTTCG
CCTTAGACTCCTTAGTTTAAAATTCTGATACAACTATAAATGGTTTATAA
AATGCTTCGCCTAGTAGGATAACGATAAACTTCAAAAAAGTGACCTGGTG
CTTACTCATAGGAAACAGGCTATACTATATCAGTCGTACTGAGCTTAAAT
AAGAAAAAGTACTTTACTTAATCGGCTTTCTTGGTGAAAGTCTGTTTAAC
GTCCCCTTCTTAATCCAAATAGATGGTTATATACATATTAAATGTTCCCC
TCTGTTTGCAGTAGGGTGATTTCGTATCGACCTTTATCCGGAAAGTTTTA
CTCAAACACAGAATAGGATTGTCAGTTTTTATATCTTTAAAGCTGATGAC
TTTTTATAGGTTTAATTAAACTTCAAGCTTTGAATACAAGCTTGAATAAG
AATGTCTGTTTAGTGCTTGTTTGAGTCACTTATAGTATTTCcaatatgtc
aaataaaaattctttttgtgaCAAATCGGATGAAAGAATGGTTCTAAGTT
TCCATTCAGAGAAAGGGCTTTGATGACTTATACAAGAGAAGGATGATATT
TATAGTTTTACTGTCGGACCTCCTTGGTTTTGATGGAATTTACACTAAAC
AGCAAGAGGGTTTTGGGCAATTTTTCACCCTCTATTGGAATGCtaattat
gttttttgcttttttgaatcctttgaaattcttttgacTATATGAATATC
CGACTATATTATTGCCAAGAATATTAAAAAAGGCAAAGTCAAATAAACTT
TTAATAATTTCGGTCTCTTAAATATTTACCGTAGACCAATACCAATATCC
GACTCCAAGATGatgggaaaaatgaaattcgCTGAGCTGGCACGAAAAGC
GAACGCCAGACCAATACAAGAAGAACAGGAGACAGCAGAAATTGATCAAG
AAGAAAAGATCGAAGAAAAACCACGTACTGAAACCTTTGCAGATCTTCCT
CCTTTAGATGAGAACAAGTATGTTCTGGATGAAGCTTATTTCATACCGAT
ATCCACCATCAAAGAAAAGGCTATAAAACCGAAAAAACCGGTCGCCCGAA
AAATGTCTGGATTCACACGGATGGGATCATATAAGAGCGCGCCGTTGAAA
ACAACCGACGAGTCTATTCCTTTAATGGATAGTTGTAGCAGTGATACCAA
AAGTACAGGGGTTTCCAGTGAAGGCAGTAACGAAGCTGTCGAGGAGAAGG
AGGGGAAATCCCCAGCGAAATCAGGGAATATTTTTGCCAGGAGAAAGATA
ACTGAAGCAGCTGATCCGACACAATTAAAGGAAAACCCTTTCCATCGCCG
TGGCGTTGTTATCGATCCATTTCAACAAAATAATATTCGATCAAAATTAA
AGACCAGATTAAGAAAGATCGTGGACGAAAGATTGACTGTGAAACAGATT
TTCTCGAGATATGTTGAAAGTTCAACTCTTCACGGATTCTTGTATACTTG
TTCAGATACTTATATCATAAGGAGATTCTTATGGGCGTGCTTAATGATCT
TAGGTGCAATATACTTTTTGGTCAAACTAAGAGAAGGTATCATAGAGTAC
TTCGAATATCCGTTCAGCACATTGTCGATCATTGACTTTCCAGATATATT
GGAGTTCCCAACAATCAGTTTCTGTTTAGTCAACGGATACAAACATAAAG
AACTCAATGAGAGTAGATTAGGACCTTTATTACAAAATGGTAGATTTCCT
ATCCATTCAAGTTGGTTGGACCCTGGGTACGACATCCCCGGTGATGAACT
GGTTGAGGTGATGAATAATATCTCATTCACACCTTCAGATGTTTTCGAGG
AATGTGATTGGATAAAACGAGACACAGCTCACCCATCGGTGCCACCCAAT
AAATGCGACGCTGCAAATTTCACCACATTCTTCAATAAACAAAACGAGAA
ATGTTTCATGTTGAATTCAAACCAAAAAGGTCACCCTTTATTAAAAGTCA
ATCACGAAGGTTTAAAATACGGCTACGAAGGACTTTTTGATATGAGGACT
TCGAGCGCCTTTTTGACACACCCCTTTGCTGGATTGAGGGTGTATATTCA
TTCTCACCACGAACCTGCAGGCTCAGGATCAAGCTTCTTGTTGTCGCCTG
GTTTCCATTACTACGTCAAGATGGACATGCACGAGGTAAGAATAACGAGT
TTATTTCACGCATGCATAATGGAAAAGAATAAGACAAGGGGACGATAATT
TAAAAATTACTTTCCACTTTACAAACTTTTTGAGAACTCCCACCCTgttt
tctttacttaaaaacgACTTaaaatggatttttaacgtATTGTACTTATT
GGCCCTCTAACCTTCTCGAGTATAACTCCAAGTAAAGAAGAACAGTCTTT
TTCAGTAGTGATAAACCTCTGTATCAGTGGCCCAGCATGAATCTCGAGTC
ATTCTAAACCAATGGTTTCCCAATGTGGATAAGATTTCATAGTCTTTTTC
CAATACggttgttttaatttttcaaaaaggatgATCTTTTGTCCGAAAAA
TGCCAGAAGAAGAAACAGATTTttcgaaactttcaaatatattCATACAT
CTCTATTTCCTGATTAAGGTCAATATTAAACAGGATAAAATCTCCCTAAA
GATTTCGAGCTAAGCCTCTAATAAGTTGATCGGAAAAGTCAATAATGGAA
TGTCTAAGTCACACAATGTCTATAAAGAGATTAGACGAAAGTAAAAAGCT
TCTATTCGTCAGTACTcattaagaaaatttgaaacgtTCGGTATAGTACC
TACCAATAGAAAAAATTTACATGGGCCAAATTTTCATAATACTCAATTCA
AGTCATTTCAGTGAAAATCCATCGATGGAAAATCCCAACGAAATAGTCCA
CGTCCTGCTTATTGTAAAAATCAGCTCGGAAAACCATGTTTCgaatacag
tcaactctcttaTTCGAACCTCCCTTATTGGAATCTTTCTGTGATCCAAA
TTAAAAAGTCAGTTTCTTTCAATTGGAAAGAAGTGGTCTAAATTCCTTTC
TGtagttcgaatctttctgtcCGTCTTCCTTGAAAATCTAATTTGAGAGA
GATTCAACAACTGCAGTCACTTGTTTTCTTCACTTTTAGACACACAATCT
TGAACCTCCGTACAGTACACAGTGTGGTGAAATccaattaaaatatttcg
atACATACAATCAGAAAGCATGTTTATTAGAAAAGTTGACGGATTATGTT
GGTGAAAAATGCGGATGTAGAGAACCATTCATGGCAGGTAAGCGAGGCTT
CGATCATCCTTTtctaatgggctattccagaaaaaatttgtaccccctTT
GTTGAGGtggtcattttttaaaaaggtaaccccctggattttttttctcg
tttcATAGACTACCCTAAATTTTtgacctcgttttactgacGACCCTGGT
TTTCCCACCTCACTTTACTGACCACCTTGaatttttacactcgaaaaacc
agaccattctgaattttttattttccagaccaccctggacgtcacacctc
ctcaataTAAGGTCATAGACTATTTCTCAATGTGTTATGTAAAATACACG
TCAATAAAGTTCATGCTTGACCTTAGTGAAACTTCTGGTTAGTACGATAT
CCCAATTTCCTCAACGCCAACCTCCTTAAGACCTTATAagcactacacgt
ttttttataagaatatccaaaatttaggatttgtttttgaagccttaggg
tTCTTAACTTCGGAGTTTAAACCctgaaaatgttcgtacatagcatgttc
tcattttcaacactttctgagcatttttgtccaatttcctACAAAATTTC
gcaagctttaaaatgttctaaagtACATCCtgatattttgaccatcgaag
ccttacgttcttatatagttttatcttatgaaaaaacgtgtatctgcCCA
CGTATAACTATTGGAGTACTCCGTTGAAGGATAATTCCTAGTAAATTAAA
TGAGTTTGATCCTAACTACGTTGACATGATTAAATTTCCTATTTCTTTCT
AGAAAACGGTTTGCCGAGCTGTTCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014186-exon-sc0000183-1491911889:59959..60303 | TCONS_00014186-exon-sc0000183-1491911889:59959..60303 | Clytia hemisphaerica | exon |
| TCONS_00014186-exon-sc0000183-1510915933:59959..60303 | TCONS_00014186-exon-sc0000183-1510915933:59959..60303 | Clytia hemisphaerica | exon |
| TCONS_00014186-exon-sc0000183-1575043694:59959..60303 | TCONS_00014186-exon-sc0000183-1575043694:59959..60303 | Clytia hemisphaerica | exon |
| TCONS_00014186-exon-sc0000183-1491911889:61993..63343 | TCONS_00014186-exon-sc0000183-1491911889:61993..63343 | Clytia hemisphaerica | exon |
| TCONS_00014186-exon-sc0000183-1510915933:61993..63343 | TCONS_00014186-exon-sc0000183-1510915933:61993..63343 | Clytia hemisphaerica | exon |
| TCONS_00014186-exon-sc0000183-1575043694:61993..63343 | TCONS_00014186-exon-sc0000183-1575043694:61993..63343 | Clytia hemisphaerica | exon |
| TCONS_00014186-exon-sc0000183-1491911889:64298..64445 | TCONS_00014186-exon-sc0000183-1491911889:64298..64445 | Clytia hemisphaerica | exon |
| TCONS_00014186-exon-sc0000183-1510915933:64298..64445 | TCONS_00014186-exon-sc0000183-1510915933:64298..64445 | Clytia hemisphaerica | exon |
| TCONS_00014186-exon-sc0000183-1575043694:64298..64445 | TCONS_00014186-exon-sc0000183-1575043694:64298..64445 | Clytia hemisphaerica | exon |
| TCONS_00014186-exon-sc0000183-1491911889:65211..65235 | TCONS_00014186-exon-sc0000183-1491911889:65211..65235 | Clytia hemisphaerica | exon |
| TCONS_00014186-exon-sc0000183-1510915933:65211..65235 | TCONS_00014186-exon-sc0000183-1510915933:65211..65235 | Clytia hemisphaerica | exon |
| TCONS_00014186-exon-sc0000183-1575043694:65211..65235 | TCONS_00014186-exon-sc0000183-1575043694:65211..65235 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000183 | supercontig | sc0000183:59959..65235 + |
Blast
BLAST of TCONS_00014186 vs. Swiss-Prot (Human)
Match: ASIC2 (Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC2 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.857e-16 Identity = 91/329 (27.66%), Postives = 132/329 (40.12%), Query Frame = 2
Query: 956 QIFSRYVESSTLHG----FLYTCSDTYIIRRFLWACLMILGAIYFLVKLREGIIEYFEYPFSTLSIIDFPDILEFPTISFCLVNGYKHKELNESRL---GPLLQNGRFPIHSSWLDPGYDIPG--DELVEVMNNISFTPSDVFEECDWIKRD-------TAHPSVPPNKCDAANFTTFFNKQNEKCFMLNSNQKGHPLLKVNHEGLKYGYEGLFDMRTSSAF-------LTHPFAGLRVYIHSHHEPAXXXXXXXXXX-XXHYYVKMDMHETHNLEPPYS-TQCGEIQLKYFDTYNQKACLLEKLTDYVGEKCGCREPFMAENGLPSCS 1867
QIF+ +STLHG F+Y IRR LWA + LV+ E + YF Y T L FP ++ C +NG++ L + L G LL ++ DP P + L + N + P F +++ R + +C +FTT F K KC+M NS + G PLL G G E + D++ T AG++V IHS EP GF +V L PP+ + E+ L +F Y+ AC ++ T Y+ E C CR M + P C+
Sbjct: 18 QIFAN---TSTLHGIRHIFVY---GPLTIRRVLWAVAFVGSLGLLLVESSERVSYYFSYQHVTKVDEVVAQSLVFPAVTLCNLNGFRFSRLTTNDLYHAGELL--ALLDVNLQIPDPHLADPSVLEALRQKANFKHYKPKQ-FSMLEFLHRVGHDLKDMMLYCKFKGQECGHQDFTTVFTKYG-KCYMFNSGEDGKPLLTTVKGGTGNGLEIMLDIQQDEYLPIWGETEETTFEAGVKVQIHSQSEPPFIQELGFGVAPGFQTFVATQEQRLTYLPPPWGECRSSEMGLDFFPVYSITACRIDCETRYIVENCNCRMVHMPGDA-PFCT 335
The following BLAST results are available for this feature:
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