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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014183 ID=TCONS_00014183|Name=TCONS_00014183|organism=Clytia hemisphaerica|type=transcript|length=1627bpRun BLAST on NCBI protein sequence of TCONS_00014183-protein >TCONS_00014183-protein ID=TCONS_00014183-protein|Name=TCONS_00014183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp MWQDKAAMHWFVSMLLLATLIVVSESQVCRDTDRRCPTWRPYCNSNGHVIRun BLAST on NCBI transcript from alignment at sc0000183:36107..52564+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014183 ID=TCONS_00014183|Name=TCONS_00014183|organism=Clytia hemisphaerica|type=transcript|length=16458bp|location=Sequence derived from alignment at sc0000183:36107..52564+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000183:36107..52564+ >TCONS_00014183 ID=TCONS_00014183|Name=TCONS_00014183|organism=Clytia hemisphaerica|type=CDS|length=13980bp|location=Sequence derived from alignment at sc0000183:36107..52564+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014183 vs. Swiss-Prot (Human)
Match: CTRC (Chymotrypsin-C OS=Homo sapiens GN=CTRC PE=1 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 1.072e-34 Identity = 84/270 (31.11%), Postives = 135/270 (50.00%), Query Frame = 2
Query: 617 TCGVNKLSKQISSFVVSGSKSERGKWPWLAGLY-----AWGEHKCGSTLIHPQYAITAAHCIFDENRGSEIPATNLDVHVNDFIRDEHDIGEEKYAVEKHWLHPKYKKTNLQMEHDIAVVKLKKPVQMSKSVGIACLPKKNEKVPRNSKCYIAGWGVTEVHDGVHDGKSEILMDGLLRPISNSQCSQKNQFLGKTLVNENMICGHSPEKEQLGTCQGDSGGPYVCLTSAKRFAIQGVVSFGN-AGCDVKELYPVFTRVSQYVDWIQQKIK 1408
+CGV +S+ VV G + WPW L W H CG TLI + +TAAHCI R + ++ V D +G + V K W L + +DIA++KL + V++S ++ +ACLP+K+ +P++ CY+ GWG + + D L GL + ++ CS+ + + + V + M+C + C GDSGGP C + + G+VSFG+ GC+ ++ V+TRVS Y+DWI +K++
Sbjct: 16 SCGVPSFPPNLSARVVGGEDARPHSWPWQISLQYLKNDTW-RHTCGGTLIASNFVLTAAHCI-SNTRTYRVAVGKNNLEVEDE-EGSLFVGVDTIHVHKRW-------NALLLRNDIALIKLAEHVELSDTIQVACLPEKDSLLPKDYPCYVTGWGRLWTNGPIADK----LQQGLQPVVDHATCSRIDWWGFR--VKKTMVCAGG--DGVISACNGDSGGPLNCQLENGSWEVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWINEKMQ 267 The following BLAST results are available for this feature:
BLAST of TCONS_00014183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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