TCONS_00014179 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014179
Unique NameTCONS_00014179
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014179 ID=TCONS_00014179|Name=TCONS_00014179|organism=Clytia hemisphaerica|type=transcript|length=679bp
TTTGAAATGAGAGGAAATTATTGTTGACAATTTCagcaatttttgaatta
agtTCATCACACTTCAAAGAAAGGACGAGATATCCTGGCTATGAATTGGT
TAACTATATGTTTAGTTGCTGTGACGTACGTCATAGTGGCTAAATCGCAA
GTATGCATTGACTCGAGCAGAAGATGTGTATATTGGTCACGTTACTGTAG
AACAAGCACATATGTTGCACTACAATGTAGAAGGACGTGTGGACGGTGCC
TTATCCCTCGCCCAAGACCAGTCGTTCCATCTAGAAGATGTTTCGATATT
GACCGTCGTTGTGTGTACTGGAGGAATCACGGCTATTGTCGAAGATATTA
TTATCAAAATCGATGTCAAAAAACTTGTGGTGTATGTAGAGCACTTCCAA
CGACAAGAGTATGCGTGGACAGAGACTCGAGATGTCCTTTTTGGGCAAGA
CGCTATCAATGTTTCCTCAATTCAAGATATATGAATCGGAATTGTAAAAA
ATCTTGTGGAAAATGTCCTAAACCAAAACCAAAACCAAAGCCAAGGCCAA
GAACAACAAAGACAACGACAACCACAACAACCACAACCACATCTACGACC
ACTTCAACTGATCCACCACCACCTGTTCCAGAAGTTACAAAACCTCCAAC
TCCAAGAGTTACAACTGATGGAATCCCAC
Run BLAST on NCBI

transcript from alignment at sc0000183:28195..31587+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014179 ID=TCONS_00014179|Name=TCONS_00014179|organism=Clytia hemisphaerica|type=transcript|length=3393bp|location=Sequence derived from alignment at sc0000183:28195..31587+ (Clytia hemisphaerica)
TTTGAAATGAGAGGAAATTATTGTTGACAATTTCagcaatttttgaatta
agtTCATCACACTTCAAAGAAAGGACGAGATATCCTGGCTATGAATTGGT
TAACTATATGTTTAGTTGCTGTGACGTACGTCATAGTGGCTAAATCGCAA
GGTAGGACTCTTAGACGATTCTTTCGTCCGTTGGATGGAGAGTATTCGCG
GAGAAATATACATATGTACGGAGCTTATAGCCGTAATGGGCGGCAGTAGA
AGCTTGAAACATAGTAAAAACATCCATCACTTCTTACTCCGACCCGGTCT
TCCCTTGCTTTCCGAATTCTTTCCACTTCCTTGACTTAATGGTTTTTATT
TCTAAGGCCCTCAATATGTGATTAAGAGACTGTTTAGTAATCAACGAAAA
GACGATTTCATCTATATTCCCCCTCTATTGACAATTGGAGCAAAAGAGGT
CACGCAACACTCTCAAATACAATCAAAAGCGACAAGATTTCATTTCTAGA
TTGAATTTTAATAGATGATTAAGGAGTCTTTCttaaacatttttggaaac
GTTTTCCGAATTTATCGTCAGctttgaaaattgacttttaatGTAActga
ttttagtgaaaaagtctCAATTTCAAAAGGCAACTATTTTGACACTAGAT
CTTTCGTTCCACCTACAGTATGCATTGACTCGAGCAGAAGATGTGTATAT
TGGTCACGTTACTGTAGAACAAGCACATATGTTGCACTACAATGTAGAAG
GACGTGTGGACGGTGCCTTATCCCTCGCCCAAGACCAGTCGGTAAAGTAC
CTTGGACGCATTGGACGAGAACAATCGAAATAGTTGTTTGTACAGGCCCA
ACTtaccctaaaaatcaaaaattcaaaatcaatcaCTTTCCTCAATCACT
TCTTTGTTCGAATTTCTATCCGGTTGAAATTTTACCCTTGTTTCTATTCT
TTTCTCACCTTACCTTATTTGAATTTGAGTAAATTCATACGTAAAATAAC
AAAACTCTTTCAGGGAAAGAAGTCAATTTGAGCAGATTTGAGATATATTT
TGGCAAAAAGAGGCAAATCTTTTACAGTCGAAATTTCTCCTTATCTACTT
AACATGGACCCCCGTCCGATAAAACATCTGTCACGTGCAGAATTAAACAg
ctataagaacatttttgagtCGTTTTAGGGATATTTTTGGGTTTATTTCC
TTTATATCCGCCAGTTCCATCTAGAAGATGTTTCGATATTGACCGTCGTT
GTGTGTACTGGAGGAATCACGGCTATTGTCGAAGATATTATTATCAAAAT
CGATGTCAAAAAACTTGTGGTGTATGTAGAGGTAagaattttttcattgc
aaaaAGAATGTTTCAATGATTGTGATTAGAATATAGTTCTGGGATAATGC
AAAGTACAAGATCTCAATGCAATAGATACATGTGTTATCAAGCTAATGCC
TTTACGTTTAACTGGCCTAACTTAAGAGAGTTTTCAGGCTTATACAACAA
GATTCAACCATCATTTAGTTGACAGCATCAGAAGAGAGGAAAGAAGAATA
AAGATAGCTAAATAGACAAAGTTATAACATCGGGTACAGACCCACAAATA
ATATAAATCTGTACTAAGCCGTCAGAAGATGACAACAATATAAACATAAA
GATATGCAATAAATTATGGGTAGCGACTTGCTTCATATCGACTTAAGATC
GTATTGACTAAAATTCATTAAACTACTTTTGTCTCTATCATTAGCACTTC
CAACGACAAGAGTATGCGTGGACAGAGACTCGAGATGTCCTTTTTGGGCA
AGACGCTATCAATGTTTCCTCAATTCAAGATATATGAATCGGAATTGTAA
AAAATCTTGTGGAAAATGTCCTAAACGTAACGACTACAACATACtatgtt
ggacggtgaaaaagaatgcggctattatattttgatttttcccgacatgt
ttcggactcggtccgttctcaagggaatgatatttctatataaaaaaaag
tgtttctatacaaaattatttgacgtcaaattggaCAAATACGTCATTTT
AGGCGATTTCGGCTTGAAAATGGGTTGGTGTAAATGGGGCCATCTGATAA
GTTGAATTCGGTCTAAACGACTACAACATactacatacatacatacataa
ctTCATCCCTCTCAACATACTATTACCATTTAAACTATGAATCAGTGCCC
TTTTTTGAGTATTCGTCTGCAATCGAGGAAAAAGTGAAAACGTTGGGtgt
aaattttgaatatttagtgTACAATCTTTTCGCCATTTTCTTAAGTCATT
CGATCTGGGTAAAATTATAGAGATCAGCACCTTTTCTATTTCATAGCAAA
ACCAAAACCAAAGCCAAGGCCAAGAACAACAAAGACAACGACAACCACAA
CAACCACAACCACATCTACGACCACTTCAAGTAGAAAAAATCCACTTATC
CCAAAGCGTACCTCGAGGGAACCTTGCCCTTGTTGTAGATGCTCAAAATA
ATAGTAATAGAACAGAACGATAACAGTAATAGAACTAGCCGTCATCCGGG
TCGCACCCGTCGATTAGAGTGTGCCTTACGCATGACAAAGCCCTTAGGAT
GGTGGGTAGGGTGTTTTAGGGATTTATTCAAACTCTAAGAACGAAAAATT
ACCACTTAAAATCGATCGAAATTCAACAAGTGAAATAAGAAAACAAAGAG
AAACAAACGAGTACAACAAAAATTTTAGGAATGAATTTCACAAAGACGAc
catcaaaatcaacaaaatcaactTTGTTTCGCTCATTTTCAGCTGATCCA
CCACCACCTGTTCCAGAAGTTACAAAACCTCCAACTCCAAGAGTTACAAG
TAAGTCGATATCTGAATCTTAGAAATCCCTAAAAATATTAGTCAGCGAAT
CAATCTTAAACataacaaatctcttttgacttTAGCTGATGGAATCCCGC
TACCTGTTCCAGAAGTTACAAAACCTCCAACTCCAAAAGTTACAAGTAAG
TTAATATCTGAATCTTGGAAGTAACCCAAAATATTAATCAGAGGATCAGT
CTTAAACataacaaatctcttttgacttTAGCTGATGGAATCCCGCCGCC
TGTTCCAGAAGTGACAAAACCTCCAACCTCAAAAGTTACAAGTACCATAA
GTCAATATCTGAATCTTGGAAATCCTCCAAAATATAAAAGAGAGGATCAA
TCTTAAACataacaaatctcttttgacttTAGCTGATGGAATCCCGCCAC
CTGTTCCAGAAGTTACAAAACCTCCAACTCCAAAAGTTAAAAGTAAGTCA
ATATCTGAATCTTAGAAATCCCTCAAAATATAAAACAGAGGATCAATCTT
AAACataacaaatctcttttgacttTAGCTGATGGAATCCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007938XLOC_007938Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014179-exon-sc0000183-1491911889:28195..28345TCONS_00014179-exon-sc0000183-1491911889:28195..28345Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1510915933:28195..28345TCONS_00014179-exon-sc0000183-1510915933:28195..28345Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1575043694:28195..28345TCONS_00014179-exon-sc0000183-1575043694:28195..28345Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1491911889:28863..28985TCONS_00014179-exon-sc0000183-1491911889:28863..28985Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1510915933:28863..28985TCONS_00014179-exon-sc0000183-1510915933:28863..28985Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1575043694:28863..28985TCONS_00014179-exon-sc0000183-1575043694:28863..28985Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1491911889:29409..29525TCONS_00014179-exon-sc0000183-1491911889:29409..29525Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1510915933:29409..29525TCONS_00014179-exon-sc0000183-1510915933:29409..29525Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1575043694:29409..29525TCONS_00014179-exon-sc0000183-1575043694:29409..29525Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1491911889:29939..30070TCONS_00014179-exon-sc0000183-1491911889:29939..30070Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1510915933:29939..30070TCONS_00014179-exon-sc0000183-1510915933:29939..30070Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1575043694:29939..30070TCONS_00014179-exon-sc0000183-1575043694:29939..30070Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1491911889:30541..30624TCONS_00014179-exon-sc0000183-1491911889:30541..30624Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1510915933:30541..30624TCONS_00014179-exon-sc0000183-1510915933:30541..30624Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1575043694:30541..30624TCONS_00014179-exon-sc0000183-1575043694:30541..30624Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1491911889:30987..31043TCONS_00014179-exon-sc0000183-1491911889:30987..31043Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1510915933:30987..31043TCONS_00014179-exon-sc0000183-1510915933:30987..31043Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1575043694:30987..31043TCONS_00014179-exon-sc0000183-1575043694:30987..31043Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1491911889:31573..31587TCONS_00014179-exon-sc0000183-1491911889:31573..31587Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1510915933:31573..31587TCONS_00014179-exon-sc0000183-1510915933:31573..31587Clytia hemisphaericaexon
TCONS_00014179-exon-sc0000183-1575043694:31573..31587TCONS_00014179-exon-sc0000183-1575043694:31573..31587Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:28195..31587 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0636094	0	0	0	0.0502024	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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