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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014163 ID=TCONS_00014163|Name=TCONS_00014163|organism=Clytia hemisphaerica|type=transcript|length=1472bp
NNCGAAACCCATTTTGGTTTGGTCGAAGTACTTTATCAATTTCAGGACGC
AGTCTATTTAGAATCAAGCGATTATAGATTTTCGCCGAGACTTGACTGAG
ACTGATTCCGCGATAGTTATCGGTTTTAGTTAAATCACCCTTCTTCGGAA
CAGGTACGATAGCAGACAATTCCCACTCAGGAGGTCGAGCGCCATCTAGA
GTTGCATTGCAGAAGGTAAGAAGAATTTCTTTACATTTAGGGAGCTTCCA
CAGTTCGAGTGGAAGACTATCGAGACCGGGTGCCttgttgtttttcattt
gtttgatGGCTGATTCAATTTCCGTCATAGTAAAGTCTCCGGTAGAGATG
TTTTCGTTGAGTTCAAAAATTTGTTGAGGATCAAAAAGTTCGTTTTCATC
GGTGGTAACGTTGTTAAGAAGTTTCTGGAAGTGGTCTTTCCAAGTTTTTA
GTCTATCGTCTCCTGAAATGAAACAAGTAGAGGGCTTTTTCTTTCCCGAG
AGTTCCTTAACAAGTTTCCAGGCGTTTTTTGAGCTGTTTGTCGATTTGGA
CTNAAGATTCCGACTTACTCTAtcgaattttcggaaaaaagggTATGCTA
TTCCTGCAGATATTTGGCATCCGCGAGAGATTTGCATTCAATTCATTCAA
TCGATGACTCCTTCCCACTGGGTCaattttaaaatcgcttaatctTTCGG
AGTCTAAGAAATCCGGAACTTTCGTCGAGGCGATTGGATATCAGCTCCTG
GATCTTCTTCATTactttgaaatgccagaaagcTATTTACCGTTTCTCCG
GAGTATCAGGATAACAAAAGAAACCGGAATCGATGATATTGTATCCAAAT
CAGCAAGCGAAGAAAAAGGATTCCACTTAGTCTCAACCAAAAAACACCTC
TTACATCATACAGTGCTGCTATTCATTCAGAATTATTAGAAACCATTCTT
TTTGTGTTAATTCGTGAGATGGGTACGAACCTGGTTGATATAGATGAAAA
ATACATTTGCAAACTTCTTTTTGACGAGTACTTTCAAAGAACGTTTCTGC
TAGAAAGGAAATGGATGATTTGGAAATGAAACATCTGATCAATGCAAAAC
ATTTAGAGAACGGGGATAAAGCTGATTTTTAGTTGACGGAGATTGTAAGA
AATGCCGCTTCAGGACTTTTCAATGGTGTAAGTAACAACAGTCAACAGAA
ATGACTAAAAATTGTTTCTCCAGCTGACGTTAGGTTGATTTTGATGGCGT
GAGAAGCGATTTTGCAATCATATCTAAAGCAAAACTGTCACGAGGTTGGA
AAAAGTGCATAAAGAGAAGAAATCTTTCTGTGACACATACTACGGTATAC
TAGAAAGAGCTATCCTTTTTTTGAAGCGGTCGCCAACAGTTTGTTTGAAA
CACGCTGACCTGGTTGTAGTTGGGTATTTATTAGGCGCGTTATATCGACC
TCAACTCCTTAAAAAGAACGAT Run BLAST on NCBI protein sequence of TCONS_00014163-protein >TCONS_00014163-protein ID=TCONS_00014163-protein|Name=TCONS_00014163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MQISRGCQISAGIAYPFFRKFDRVSRNLXSKSTNSSKNAWKLVKELSGKK
KPSTCFISGDDRLKTWKDHFQKLLNNVTTDENELFDPQQIFELNENISTG
DFTMTEIESAIKQMKNNKAPGLDSLPLELWKLPKCKEILLTFCNATLDGA
RPPEWELSAIVPVPKKGDLTKTDNYRGISLSQVSAKIYNRLILNRLRPEI
DKVLRPNQNGFX Run BLAST on NCBI transcript from alignment at sc0000181:362361..363832 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014163 ID=TCONS_00014163|Name=TCONS_00014163|organism=Clytia hemisphaerica|type=transcript|length=1472bp|location=Sequence derived from alignment at sc0000181:362361..363832 (Clytia hemisphaerica)
ATCGTTCTTTTTAAGGAGTTGAGGTCGATATAACGCGCCTAATAAATACC
CAACTACAACCAGGTCAGCGTGTTTCAAACAAACTGTTGGCGACCGCTTC
AAAAAAAGGATAGCTCTTTCTAGTATACCGTAGTATGTGTCACAGAAAGA
TTTCTTCTCTTTATGCACTTTTTCCAACCTCGTGACAGTTTTGCTTTAGA
TATGATTGCAAAATCGCTTCTCACGCCATCAAAATCAACCTAACGTCAGC
TGGAGAAACAATTTTTAGTCATTTCTGTTGACTGTTGTTACTTACACCAT
TGAAAAGTCCTGAAGCGGCATTTCTTACAATCTCCGTCAACTAAAAATCA
GCTTTATCCCCGTTCTCTAAATGTTTTGCATTGATCAGATGTTTCATTTC
CAAATCATCCATTTCCTTTCTAGCAGAAACGTTCTTTGAAAGTACTCGTC
AAAAAGAAGTTTGCAAATGTATTTTTCATCTATATCAACCAGGTTCGTAC
CCATCTCACGAATTAACACAAAAAGAATGGTTTCTAATAATTCTGAATGA
ATAGCAGCACTGTATGATGTAAGAGGTGTTTTTTGGTTGAGACTAAGTGG
AATCCTTTTTCTTCGCTTGCTGATTTGGATACAATATCATCGATTCCGGT
TTCTTTTGTTATCCTGATACTCCGGAGAAACGGTAAATAgctttctggca
tttcaaagtAATGAAGAAGATCCAGGAGCTGATATCCAATCGCCTCGACG
AAAGTTCCGGATTTCTTAGACTCCGAAagattaagcgattttaaaattGA
CCCAGTGGGAAGGAGTCATCGATTGAATGAATTGAATGCAAATCTCTCGC
GGATGCCAAATATCTGCAGGAATAGCATAcccttttttccgaaaattcga
TAGAGTAAGTCGGAATCTTNAGTCCAAATCGACAAACAGCTCAAAAAACG
CCTGGAAACTTGTTAAGGAACTCTCGGGAAAGAAAAAGCCCTCTACTTGT
TTCATTTCAGGAGACGATAGACTAAAAACTTGGAAAGACCACTTCCAGAA
ACTTCTTAACAACGTTACCACCGATGAAAACGAACTTTTTGATCCTCAAC
AAATTTTTGAACTCAACGAAAACATCTCTACCGGAGACTTTACTATGACG
GAAATTGAATCAGCCatcaaacaaatgaaaaacaacaaGGCACCCGGTCT
CGATAGTCTTCCACTCGAACTGTGGAAGCTCCCTAAATGTAAAGAAATTC
TTCTTACCTTCTGCAATGCAACTCTAGATGGCGCTCGACCTCCTGAGTGG
GAATTGTCTGCTATCGTACCTGTTCCGAAGAAGGGTGATTTAACTAAAAC
CGATAACTATCGCGGAATCAGTCTCAGTCAAGTCTCGGCGAAAATCTATA
ATCGCTTGATTCTAAATAGACTGCGTCCTGAAATTGATAAAGTACTTCGA
CCAAACCAAAATGGGTTTCGNN Coding sequence (CDS) from alignment at sc0000181:362361..363832 >TCONS_00014163 ID=TCONS_00014163|Name=TCONS_00014163|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0000181:362361..363832 (Clytia hemisphaerica)
ATGCAAATCTCTCGCGGATGCCAAATATCTGCAGGAATAGCATAcccttt
tttccgaaaattcgaTAGAGTAAGTCGGAATCTTNAGTCCAAATCGACAA
ACAGCTCAAAAAACGCCTGGAAACTTGTTAAGGAACTCTCGGGAAAGAAA
AAGCCCTCTACTTGTTTCATTTCAGGAGACGATAGACTAAAAACTTGGAA
AGACCACTTCCAGAAACTTCTTAACAACGTTACCACCGATGAAAACGAAC
TTTTTGATCCTCAACAAATTTTTGAACTCAACGAAAACATCTCTACCGGA
GACTTTACTATGACGGAAATTGAATCAGCCatcaaacaaatgaaaaacaa
caaGGCACCCGGTCTCGATAGTCTTCCACTCGAACTGTGGAAGCTCCCTA
AATGTAAAGAAATTCTTCTTACCTTCTGCAATGCAACTCTAGATGGCGCT
CGACCTCCTGAGTGGGAATTGTCTGCTATCGTACCTGTTCCGAAGAAGGG
TGATTTAACTAAAACCGATAACTATCGCGGAATCAGTCTCAGTCAAGTCT
CGGCGAAAATCTATAATCGCTTGATTCTAAATAGACTGCGTCCTGAAATT
GATAAAGTACTTCGACCAAACCAAAATGGGTTTCGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014163-exon-sc0000181-1491911889:362361..363832 | TCONS_00014163-exon-sc0000181-1491911889:362361..363832 | Clytia hemisphaerica | exon |
| TCONS_00014163-exon-sc0000181-1510915933:362361..363832 | TCONS_00014163-exon-sc0000181-1510915933:362361..363832 | Clytia hemisphaerica | exon |
| TCONS_00014163-exon-sc0000181-1575043694:362361..363832 | TCONS_00014163-exon-sc0000181-1575043694:362361..363832 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000181 | supercontig | sc0000181:362361..363832 . |
Blast
The following BLAST results are available for this feature:
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