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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014161 ID=TCONS_00014161|Name=TCONS_00014161|organism=Clytia hemisphaerica|type=transcript|length=3730bp
ACAGTATTTTGCTAAATTCCTTCCTGTAAATTTGTATCacttttctcatt
ttgattagGATCCCATTGATCCCATATTTGTCATACTAACATTCTGCAAC
ATTATTTTAAACGAAGCTGTCAGAAGAGGGTTGACATTACTGTTCCGGGG
ATAAGAATTGATCGAGACTAATTTGAAGTTACTTCTTGATATGCATTATC
TGCATGTCTTTACTCCATAATCATATATTAACTCGTATCTATTGAAAGTT
GCAGGCTCCTTATCAAATATCCTTCGGCATGCTAGCCATACCAAAGGTGA
GCCAAAATGAAATATGGCTGCCTGACAACCCCCCAAAAAAAATGTGACGT
CCTCGTTACAAGATTTTGTCAAAGATAAATTctaaaactaaataaataat
aattttctaacATAAAATACTACAATCTTTTTGGTTTATTGTCCTTCTTG
TCTTGGCACCATTCTTGGACAGAGGAGACGTGCCCGGCTAGTCCTAATTC
GGGGACTGACAAAAAGTTCTCAGCTTGTACGACAGGCAACACTTTTATCA
ATTGAAAATCATTATCATCATGCTCAAGTTTGTGGTACAGAATTATCGTT
GTGTCATCGCCTGTGTTGTTGATTAGCGGTGTACAGAAAGCTGCTGGCAT
TGGAGGAACTTTATTTTGGTGTCATTTGGTTTCATTTCAGCTGCTAATTT
AATTACAGTACCAAAATTCGAGTCAGTGTTCATATTACCACAATTTGTAA
TTTCAGTGTATTTAGTTTGTAACTGTTTATCACTACCCGTTATGTATGCC
GTGTGtatttcaaattcataaaagtaattgaaatgaatagaccttttcgc
catTGATGTCATTCAGAGGCAAGCAGTCATTTTTCATACAAATCATACCG
AAACAGATTTGCATAGGGGTGGTGGTATTGGTAGATTGTCAACTCCCATT
TTtagcatgatgtcaaaaaattcaaagtgtagtatttttttgggaaaatt
taatctattgtaagacattttgcgcaatttttaacctcctgggtaaaaaa
tccagcattccccagggggtctttgattcacactaaagcaaaaaatgagt
aaaaatggcattttttgcgtAATAACTAAAACGTGAAACGTCagagaaac
gggtggaaacgatatGGAAACGGGTGGGATCGCCCTGGAAACGGGGAGAA
ACGACAGGGAAACTGGTGGAAACAACATGGAAATGGGGAGAAACGATTGG
AAACGGGTAAACGACCAACAGTGAACAAAGCTTCTGTTGTATCATTAgtc
ggttcccgtcgtcgcaaacgccggtttagcaaagcccttaggatgataAA
GATAGTATTGTCGGTGCtctcaaactttatttttaaggggAATTCGAATA
AGTTTTCATCAACCACGGGAGTACATATCATATATCGTAAATATATCTTT
ATGCTCTAAATGGAATAAGAGATAGAATGGGACTTATTCACcagaaatag
taaataaatagtaaataaaagcttagtaaataataaatcttCAATTGTGA
GAGTTTCTTCAGTAAGTTTGAAAgcgatttcaatttaattttaatcgAAA
ACGGGAACTTATTGACTTGAGCAGTAAAACGTCAATATATCATCAGTGTG
TAAGCatggaaaatatataaaaaatgttgCTTGCTGTATTTACGAATTGG
AGGTCGACATGACGCGCCCTAGAAGACCAAATAATAACTgcattttcgaa
aaacaataaGATTTCTTGTTTCAAAACTGCACGAAATCCCTCTTTCATAC
TCGAATCAACcctttggcaaaatttgagaaatttttcataaaatcccgag
gagtagataagctgaacgcatcataagcccttttGATAGTAAAGGGGAAA
CTATAGACTGAATTAATCCCAAAGAACGAAAAATTACCGCTTAAAATGGT
TTAAAACTAAAGATATgacaaattttatgttttgttacGTCATTTGAGCT
CTAAATGATGTCATCGAATgtgtaataaacttttcactcaACTGTAACTA
TTTCTTCATTGACCAAATATATGCTCATGATGATTTCCTATCCAATGAGG
GGACaatcattgcttaaatccttctcaaactctagatattgtatttttca
gtttttgatgacgtcatcggacctaAGATGCCTCAATTTAAATATAATTA
ATTTCGAAAGTCTCtatatacccactcttaccccTCCTAACTTATTTTCC
attaaaattctcgatccaactccttttcaaactcgagatatcgcattttg
aagtttttcccaaacttgtgacgtcattgggtcccgttctaatgttgtca
acggtcaattcaagaattttggaatttttgtgcTCAgcgggtagcttatg
ccccaagggtcccaaaaaaaacaaaaaacatcaattatttccacgggaaa
gtgggtttttaaatttgcgaaagatttgcactgcaacgacttttTCATAG
ATTACCTATACCCGTATACTCTTACGGTTATGCGAAGCCCGTGATAGACG
GAGATGTATCTTAatgctgggctagcgttacataAATTTCCGTATTAACG
TCAATTTGCTattagtttaggtataaacttatttctttctttatgatttt
tgttggcgaaaacgtttagaacatcccagacttagtcaaaaattgcaaga
aaatGAATTGGCGAATCAGAAACTTCTCTATTGTTTATTAACCGTATTAA
TTATTCGTAAAACGTCCCTTTAAAAATGGCGCCTTTTGCCTAAACAAAGA
TGGCCAACAAAAAACCGTGATAAAAAAAGCTCATTTTCTAGCGTTTTAGA
GCTGTTTTCTTCCTAAAAATACAGCCTTACAGCAATGTTTTTTATCTGAA
AGTTTATATGGCTGCTTTGGCCGCAATCTTTactgttatgtttttatttt
tctttgcattttACAGAACATAGAATCTCTTAGAATCAGAGTAGCAGTGT
GAGTGTCGATTTGTTAggttttttacatgtttttgaagaaaaagagaaTG
CGAGAACACGAAAGAGATCAATCTCTCGCTATTAGATTTACATAAACCAT
TCGTAAGGTAATTGGCCAACAATGGAAAGAGCAAACAAATCATTAGCTCA
GCGAGAGGAGAATACACTCTCGGTTCTCTTTCTATcctttttaaagttta
aagggAAGATCACAATTTAAAGGCTCCCCGGTGAAGCGTTTGGCAGACCT
TTTATATCAACTAAACAGaagtaaaatatatatatatcacTCTCTCAATC
ACGAACTGAAAAGTTTTCGAGGATCAAAGAAGAGAGCTTGAAAGGGgatt
ttgttttcaatcaataTGATTTTGCGAAATATTAATGATAACATACGAGA
GGGAGAGTGTGAACGCTTACTTATTTGTTAAAAAGTTGCACTTCTTTATT
TCAAAGCAACTGGTCATACCAATAACTGCCATGAATTGATTAAGCTTTTC
TACCAAATTAATCTAGGTGATAAAAGGATGCATTTCGACTTATATGGGGC
TGTTTCATCAAACCCATGGCCTCATCGGTCGAAACATAATGATCTACATA
TGGAGCATTTTAATGGATATTTAAAGGAGTTGTTTTTAAGATCATTACgg
ggaaatttgaatgaaaagaacACTACAAGGATTGCAAAAGCTTTAAATAA
CACAGGCAATCGTGAATAGCTTTGAGAAAG Run BLAST on NCBI transcript from alignment at sc0000181:299503..303232 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014161 ID=TCONS_00014161|Name=TCONS_00014161|organism=Clytia hemisphaerica|type=transcript|length=3730bp|location=Sequence derived from alignment at sc0000181:299503..303232 (Clytia hemisphaerica)
CTTTCTCAAAGCTATTCACGATTGCCTGTGTTATTTAAAGCTTTTGCAAT
CCTTGTAGTgttcttttcattcaaatttccccGTAATGATCTTAAAAACA
ACTCCTTTAAATATCCATTAAAATGCTCCATATGTAGATCATTATGTTTC
GACCGATGAGGCCATGGGTTTGATGAAACAGCCCCATATAAGTCGAAATG
CATCCTTTTATCACCTAGATTAATTTGGTAGAAAAGCTTAATCAATTCAT
GGCAGTTATTGGTATGACCAGTTGCTTTGAAATAAAGAAGTGCAACTTTT
TAACAAATAAGTAAGCGTTCACACTCTCCCTCTCGTATGTTATCATTAAT
ATTTCGCAAAATCAtattgattgaaaacaaaatcCCCTTTCAAGCTCTCT
TCTTTGATCCTCGAAAACTTTTCAGTTCGTGATTGAGAGAgtgatatata
tatattttacttCTGTTTAGTTGATATAAAAGGTCTGCCAAACGCTTCAC
CGGGGAGCCTTTAAATTGTGATCTTccctttaaactttaaaaaggATAGA
AAGAGAACCGAGAGTGTATTCTCCTCTCGCTGAGCTAATGATTTGTTTGC
TCTTTCCATTGTTGGCCAATTACCTTACGAATGGTTTATGTAAATCTAAT
AGCGAGAGATTGATCTCTTTCGTGTTCTCGCAttctctttttcttcaaaa
acatgtaaaaaaccTAACAAATCGACACTCACACTGCTACTCTGATTCTA
AGAGATTCTATGTTCTGTaaaatgcaaagaaaaataaaaacataacagtA
AAGATTGCGGCCAAAGCAGCCATATAAACTTTCAGATAAAAAACATTGCT
GTAAGGCTGTATTTTTAGGAAGAAAACAGCTCTAAAACGCTAGAAAATGA
GCTTTTTTTATCACGGTTTTTTGTTGGCCATCTTTGTTTAGGCAAAAGGC
GCCATTTTTAAAGGGACGTTTTACGAATAATTAATACGGTTAATAAACAA
TAGAGAAGTTTCTGATTCGCCAATTCattttcttgcaatttttgactaag
tctgggatgttctaaacgttttcgccaacaaaaatcataaagaaagaaat
aagtttatacctaaactaatAGCAAATTGACGTTAATACGGAAATTtatg
taacgctagcccagcatTAAGATACATCTCCGTCTATCACGGGCTTCGCA
TAACCGTAAGAGTATACGGGTATAGGTAATCTATGAaaaagtcgttgcag
tgcaaatctttcgcaaatttaaaaacccactttcccgtggaaataattga
tgttttttgttttttttgggacccttggggcataagctacccgcTGAgca
caaaaattccaaaattcttgaattgaccgttgacaacattagaacgggac
ccaatgacgtcacaagtttgggaaaaacttcaaaatgcgatatctcgagt
ttgaaaaggagttggatcgagaattttaatGGAAAATAAGTTAGGAgggg
taagagtgggtatataGAGACTTTCGAAATTAATTATATTTAAATTGAGG
CATCTtaggtccgatgacgtcatcaaaaactgaaaaatacaatatctaga
gtttgagaaggatttaagcaatgattGTCCCCTCATTGGATAGGAAATCA
TCATGAGCATATATTTGGTCAATGAAGAAATAGTTACAGTtgagtgaaaa
gtttattacacATTCGATGACATCATTTAGAGCTCAAATGACgtaacaaa
acataaaatttgtcATATCTTTAGTTTTAAACCATTTTAAGCGGTAATTT
TTCGTTCTTTGGGATTAATTCAGTCTATAGTTTCCCCTTTACTATCaaaa
gggcttatgatgcgttcagcttatctactcctcgggattttatgaaaaat
ttctcaaattttgccaaaggGTTGATTCGAGTATGAAAGAGGGATTTCGT
GCAGTTTTGAAACAAGAAATCttattgtttttcgaaaatgcAGTTATTAT
TTGGTCTTCTAGGGCGCGTCATGTCGACCTCCAATTCGTAAATACAGCAA
GcaacattttttatatattttccatGCTTACACACTGATGATATATTGAC
GTTTTACTGCTCAAGTCAATAAGTTCCCGTTTTcgattaaaattaaattg
aaatcgcTTTCAAACTTACTGAAGAAACTCTCACAATTGaagatttatta
tttactaagcttttatttactatttatttactatttctgGTGAATAAGTC
CCATTCTATCTCTTATTCCATTTAGAGCATAAAGATATATTTACGATATA
TGATATGTACTCCCGTGGTTGATGAAAACTTATTCGAATTccccttaaaa
ataaagtttgagaGCACCGACAATACTATCTTtatcatcctaagggcttt
gctaaaccggcgtttgcgacgacgggaaccgacTAATGATACAACAGAAG
CTTTGTTCACTGTTGGTCGTTTACCCGTTTCCAATCGTTTCTCCCCATTT
CCATGTTGTTTCCACCAGTTTCCCTGTCGTTTCTCCCCGTTTCCAGGGCG
ATCCCACCCGTTTCCatatcgtttccacccgtttctctGACGTTTCACGT
TTTAGTTATTacgcaaaaaatgccatttttactcattttttgctttagtg
tgaatcaaagaccccctggggaatgctggattttttacccaggaggttaa
aaattgcgcaaaatgtcttacaatagattaaattttcccaaaaaaatact
acactttgaattttttgacatcatgctaAAAATGGGAGTTGACAATCTAC
CAATACCACCACCCCTATGCAAATCTGTTTCGGTATGATTTGTATGAAAA
ATGACTGCTTGCCTCTGAATGACATCAatggcgaaaaggtctattcattt
caattacttttatgaatttgaaataCACACGGCATACATAACGGGTAGTG
ATAAACAGTTACAAACTAAATACACTGAAATTACAAATTGTGGTAATATG
AACACTGACTCGAATTTTGGTACTGTAATTAAATTAGCAGCTGAAATGAA
ACCAAATGACACCAAAATAAAGTTCCTCCAATGCCAGCAGCTTTCTGTAC
ACCGCTAATCAACAACACAGGCGATGACACAACGATAATTCTGTACCACA
AACTTGAGCATGATGATAATGATTTTCAATTGATAAAAGTGTTGCCTGTC
GTACAAGCTGAGAACTTTTTGTCAGTCCCCGAATTAGGACTAGCCGGGCA
CGTCTCCTCTGTCCAAGAATGGTGCCAAGACAAGAAGGACAATAAACCAA
AAAGATTGTAGTATTTTATgttagaaaattattatttatttagttttagA
ATTTATCTTTGACAAAATCTTGTAACGAGGACGTCACATTTTTTTTGGGG
GGTTGTCAGGCAGCCATATTTCATTTTGGCTCACCTTTGGTATGGCTAGC
ATGCCGAAGGATATTTGATAAGGAGCCTGCAACTTTCAATAGATACGAGT
TAATATATGATTATGGAGTAAAGACATGCAGATAATGCATATCAAGAAGT
AACTTCAAATTAGTCTCGATCAATTCTTATCCCCGGAACAGTAATGTCAA
CCCTCTTCTGACAGCTTCGTTTAAAATAATGTTGCAGAATGTTAGTATGA
CAAATATGGGATCAATGGGATCctaatcaaaatgagaaaagtGATACAAA
TTTACAGGAAGGAATTTAGCAAAATACTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014161-exon-sc0000181-1491911889:299503..303232 | TCONS_00014161-exon-sc0000181-1491911889:299503..303232 | Clytia hemisphaerica | exon |
| TCONS_00014161-exon-sc0000181-1510915933:299503..303232 | TCONS_00014161-exon-sc0000181-1510915933:299503..303232 | Clytia hemisphaerica | exon |
| TCONS_00014161-exon-sc0000181-1575043694:299503..303232 | TCONS_00014161-exon-sc0000181-1575043694:299503..303232 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000181 | supercontig | sc0000181:299503..303232 . |
Blast
The following BLAST results are available for this feature:
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