TCONS_00014150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014150
Unique NameTCONS_00014150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014150 ID=TCONS_00014150|Name=TCONS_00014150|organism=Clytia hemisphaerica|type=transcript|length=326bp
TTAGATATAACAACAAGACCTACACCGTAGATGACATTGCATGGGATAAA
CATCCCACTGACACATTTGAAAAAGCTGATGGCTCTAGAATTAGCTACAA
AGAGTATTATACAACAGCTTATGAACAAGCACCCAAAGATGACCAACAAC
CGCTTTTGTTGTCTAGACCCAAAGACAAGGATAGGAAACGCGGTGTTTCT
GGAAATATTTATTTGTTGCCAGAATTTTGCTCCATTACAGgCTTATCTGA
AGAAATGAGGGCCAACTTCCAGGTTATGAAAGATTTGGCACAACATACAA
GGATTGGTCCAGCCCAAAAAGTGGNG
Run BLAST on NCBI

protein sequence of TCONS_00014150-protein

>TCONS_00014150-protein ID=TCONS_00014150-protein|Name=TCONS_00014150-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
RYNNKTYTVDDIAWDKHPTDTFEKADGSRISYKEYYTTAYEQAPKDDQQP
LLLSRPKDKDRKRGVSGNIYLLPEFCSITGLSEEMRANFQVMKDLAQHTR
IGPAQKVX
Run BLAST on NCBI

transcript from alignment at sc0000181:446471..447060-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014150 ID=TCONS_00014150|Name=TCONS_00014150|organism=Clytia hemisphaerica|type=transcript|length=590bp|location=Sequence derived from alignment at sc0000181:446471..447060- (Clytia hemisphaerica)
TTAGATATAACAACAAGACCTACACCGTAGATGACATTGCATGGGATAAA
CATCCCACTGACACATTTGAAAAAGCTGATGGCTCTAGAATTAGCTACAA
AGAGTATTATACAACAGCTTATGAACAAGCACCCAAAGATGACCAACAAC
CGCTTTTGTTGTCTAGACCCAAAGACAAGGATAGGAAACGCGGTGTTTCT
GGAAATATTTATTTGTTGCCAGAATTTTGCTCCATTACAGGTAAAATTCC
AAAGTGGATATGGAAACCACCTTTTTGTCACTCAAGTTTATCCCATATTT
CGTTCCAAACAAGATTCCCACTTTTTTAAAAGATATTTTTGAATTTTGAT
CATTTCGGTCTTCACATATTATATTAAACATGTAATTTGACTGCAATTAA
AACTATATTTTTGGTTTCAATTGCATAGGATGACCTAGTCCTGCCTTTGA
AGAAAAAGGCCTCTTTAAGTTAACATTCACTCAATGTTTTTATCTTTTTT
TTAGGCTTATCTGAAGAAATGAGGGCCAACTTCCAGGTTATGAAAGATTT
GGCACAACATACAAGGATTGGTCCAGCCCAAAAAGTGGNG

Coding sequence (CDS) from alignment at sc0000181:446471..447060-

>TCONS_00014150 ID=TCONS_00014150|Name=TCONS_00014150|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000181:446471..447060- (Clytia hemisphaerica)
GCTTATCTGAAGAAATGAGGGCCAACTTCCAGGTTATGAAAGATTTGGCA
CAACATACAAGGATTGGTCCAGCCCAAAAAGTGGNGAGATATAACAACAA
GACCTACACCGTAGATGACATTGCATGGGATAAACATCCCACTGACACAT
TTGAAAAAGCTGATGGCTCTAGAATTAGCTACAAAGAGTATTATACAACA
GCTTATGAACAAGCACCCAAAGATGACCAACAACCGCTTTTGTTGTCTAG
ACCCAAAGACAAGGATAGGAAACGCGGTGTTTCTGGAAATATTTATTTGT
TGCCAGAATTTTGCTCCATTACAGGCTTATCTGAAGAAATGAGGGCCAAC
TTCCAGGTTATGAAAGATTTGGCACAACATACAAGGATTGGTCCAGCCCA
AAAAGTGGNGAGATATAACAACAAGACCTACACCGTAGATGACATTGCAT
GGGATAAACATCCCACTGACACATTTGAAAAAGCTGATGGCTCTAGAATT
AGCTACAAAGAGTATTATACAACAGCTTATGAACAAGCACCCAAAGATGA
CCAACAACCGCTTTTGTTGTCTAGACCCAAAGACAAGGATAGGAAACGCG
GTGTTTCTGGAAATATTTATTTGTTGCCAGAATTTTGCTCCATTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007916XLOC_007916Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014150-proteinTCONS_00014150-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014150-exon-sc0000181-1575043694:446821..447060TCONS_00014150-exon-sc0000181-1575043694:446821..447060Clytia hemisphaericaexon
TCONS_00014150-exon-sc0000181-1575043694:446471..446556TCONS_00014150-exon-sc0000181-1575043694:446471..446556Clytia hemisphaericaexon
TCONS_00014150-exon-sc0000181-1510915933:446821..447060TCONS_00014150-exon-sc0000181-1510915933:446821..447060Clytia hemisphaericaexon
TCONS_00014150-exon-sc0000181-1510915933:446471..446556TCONS_00014150-exon-sc0000181-1510915933:446471..446556Clytia hemisphaericaexon
TCONS_00014150-exon-sc0000181-1491911889:446821..447060TCONS_00014150-exon-sc0000181-1491911889:446821..447060Clytia hemisphaericaexon
TCONS_00014150-exon-sc0000181-1491911889:446471..446556TCONS_00014150-exon-sc0000181-1491911889:446471..446556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000181supercontigsc0000181:446471..447060 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
134.626	153.753	179.552	153.16	2920.35	2272.81	1012.38	1189.74	463.241	623.488	369.555	363.69	238.56	228.899	278.922	445.293	444.997	469.173	66.3982	64.4216	255.052	249.668	260.047	315.122	660.532	737.685	139.281	95.8423	257.454	298.994
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003100PAZ_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00014150 vs. Swiss-Prot (Human)
Match: PIWL1 (Piwi-like protein 1 OS=Homo sapiens GN=PIWIL1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.681e-32
Identity = 58/110 (52.73%), Postives = 78/110 (70.91%), Query Frame = 3 
Query:    3 RYNNKTYTVDDIAWDKHPTDTFEKADGSRISYKEYYTTAYEQAPKDDQQPLLLSRPKDKDRKRGVSGNI----YLLPEFCSITGLSEEMRANFQVMKDLAQHTRIGPAQK 320
            +YNNKTY VDDI WD++P  TF+KADGS +S+ EYY   Y Q   D +QP+L+S+PK   R+RG  G +     L+PE C +TGL+++MR +F VMKDLA HTR+ P Q+
Sbjct:  311 KYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPVLVSQPK---RRRGPGGTLPGPAMLIPELCYLTGLTDKMRNDFNVMKDLAVHTRLTPEQR 417
The following BLAST results are available for this feature:
BLAST of TCONS_00014150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIWL14.681e-3252.73Piwi-like protein 1 OS=Homo sapiens GN=PIWIL1 PE=1... [more]
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