|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014136 ID=TCONS_00014136|Name=TCONS_00014136|organism=Clytia hemisphaerica|type=transcript|length=1179bp
tcaagatggcggatggagcTTTGATCTTGACCTTTCTCTTCACAATGTTC
ACCATTCCTGTTTATTGCACGGAGGCGGAAGGTGGTAAAGCACATTTCCA
AGTTCACAATAAAATGCAGGGAAATATGGCCATAGTAGCAACCAAGGCTA
AAGCGATGataACTGCCACAGCTGACTCCATACAGATGGTTGTCGACCCT
GGTACTGAAAAAGTCCCTGCTGAAGATATTCAAGCTCAAACCGTACGACT
TAATGTTGCCGATATTCATGGCGTCAAACGAGATAAGCTTTCAAAACCTG
CGGCTCCTATCAAACCTTCCATAAAAAGACGTAATTTACAGGCCAAAAAG
ACCACTCACAAAAGACGCACCTTTCAAAAGTATAAGGTAAAACGCACTAA
GGATATTACGGCCACAAAGAAATCAAATGTTCATGAAAAAGAAATGCGTG
TCAACGGACAGTCTGGGCATCTCCATGTTCACACTGACCATAATATAACA
GCCGTCCATTCACAATCAGGGAAACTAGAAATCTATATAAAAAATCCAGA
CCACCATACCATAGAAGAAGAAGCAGCCGAACATCATCATAATAAAGTGA
GCGTCGAAGTGATCGCATCTGAAGCgtataaaaaacatcaattacCAAGT
ACTAAATTACCGGCATCGAAAATGAACTTGTTCCATATTGCAGACGTGAC
AGGTGTCAAGAAATCGAAACTGATTCCAAGATcgaaatcaagaaaaatga
CGTAAACTAGAATCCTATGTCCTTCACATTTTCTTCAATGAGCAGGTTGC
CAGGCTTGGAATCAAATTATATGCGGAAAGTTTTGCAAAGCTTTTATAAC
CGTGATAAATggataaacaaaaatttcggattttttttcaagttgacgat
atacatcaaattcaatttttcagctCTCCTGGCCCAATGATTGTTTAAGC
TCGCTGAAAAGCTGCATCCAATTTTTATTCTGAGGATTTTCGAACTTTGT
TCTTTGTAAAAATTACTGGTAACAAGACGAATCAAATTTAAGCCTTTGTC
CTAGGACTATTCCTGAGTTTTAATTTTGTGATAATAAAGttaaagttcat
ttttattttgaaatcagcatgaagtaaagaatttttttctcgagtaccaa
attcaattttcatagtTATATGTTTAAAG Run BLAST on NCBI protein sequence of TCONS_00014136-protein >TCONS_00014136-protein ID=TCONS_00014136-protein|Name=TCONS_00014136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
KMADGALILTFLFTMFTIPVYCTEAEGGKAHFQVHNKMQGNMAIVATKAK
AMITATADSIQMVVDPGTEKVPAEDIQAQTVRLNVADIHGVKRDKLSKPA
APIKPSIKRRNLQAKKTTHKRRTFQKYKVKRTKDITATKKSNVHEKEMRV
NGQSGHLHVHTDHNITAVHSQSGKLEIYIKNPDHHTIEEEAAEHHHNKVS
VEVIASEAYKKHQLPSTKLPASKMNLFHIADVTGVKKSKLIPRSKSRKMT Run BLAST on NCBI transcript from alignment at sc0000181:206487..208145- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014136 ID=TCONS_00014136|Name=TCONS_00014136|organism=Clytia hemisphaerica|type=transcript|length=1659bp|location=Sequence derived from alignment at sc0000181:206487..208145- (Clytia hemisphaerica)
TCAAGATGGCGGATGGAGCTTTGATCTTGACCTTTCTCTTCACAATGTTC
ACCATTCCTGTTTATTGCACGGAGGCGGAAGGTGGTAAAGCACATTTCCA
AGTTCACAATAAAATGCAGGGAAATATGGCCATAGTAGCAACCAAGGCTA
AAGCGATGGTAAGTAAGTAAATCTTTAAGTATTTAAGACCTTAAAGGACG
GTATTTTCAAACATGAAGGTAAAACGAAATGGTTTCAAATGACTCTAGCT
TTTTATCCAACAAAGACACGAAAATCTATTTGATTTCAGCGATGTTTGAA
TATTGTAATAATTTTTAAACCAGTAAATAAATCTTCAGCTTTTTCACTTT
TGCTCTTCATTTTCAACTTTTCAAAAATCTTTCATATTTTCGATTATTTT
CCTTGAAAATATCTTTGTAATAGTGTAAAGCTTTTGATACAGCATAAATA
CATTCTATGAAATTGTCAAAAAAGTAAATTCCACGATTCATTTATTTTCT
TCTTCTTCGNTTTTGATACAGCATAAATACATTCTGTGAAATTGTCAAAA
AGTAAAGTTTCCACCTACTTTCGAGATAGACTTAGTGCTACCAAAAAACA
TTCAATTTCATTTCATTTATTTTCTTCTTCTTCTTCAGATAACTGCCACA
GCTGACTCCATACAGATGGTTGTCGACCCTGGTACTGAAAAAGTCCCTGC
TGAAGATATTCAAGCTCAAACCGTACGACTTAATGTTGCCGATATTCATG
GCGTCAAACGAGATAAGCTTTCAAAACCTGCGGCTCCTATCAAACCTTCC
ATAAAAAGACGTAATTTACAGGCCAAAAAGACCACTCACAAAAGACGCAC
CTTTCAAAAGTATAAGGTAAAACGCACTAAGGATATTACGGCCACAAAGA
AATCAAATGTTCATGAAAAAGAAATGCGTGTCAACGGACAGTCTGGGCAT
CTCCATGTTCACACTGACCATAATATAACAGCCGTCCATTCACAATCAGG
GAAACTAGAAATCTATATAAAAAATCCAGACCACCATACCATAGAAGAAG
AAGCAGCCGAACATCATCATAATAAAGTGAGCGTCGAAGTGATCGCATCT
GAAGCGTATAAAAAACATCAATTACCAAGTACTAAATTACCGGCATCGAA
AATGAACTTGTTCCATATTGCAGACGTGACAGGTGTCAAGAAATCGAAAC
TGATTCCAAGATCGAAATCAAGAAAAATGACGTAAACTAGAATCCTATGT
CCTTCACATTTTCTTCAATGAGCAGGTTGCCAGGCTTGGAATCAAATTAT
ATGCGGAAAGTTTTGCAAAGCTTTTATAACCGTGATAAATGGATAAACAA
AAATTTCGGATTTTTTTTCAAGTTGACGATATACATCAAATTCAATTTTT
CAGCTCTCCTGGCCCAATGATTGTTTAAGCTCGCTGAAAAGCTGCATCCA
ATTTTTATTCTGAGGATTTTCGAACTTTGTTCTTTGTAAAAATTACTGGT
AACAAGACGAATCAAATTTAAGCCTTTGTCCTAGGACTATTCCTGAGTTT
TAATTTTGTGATAATAAAGTTAAAGTTCATTTTTATTTTGAAATCAGCAT
GAAGTAAAGAATTTTTTTCTCGAGTACCAAATTCAATTTTCATAGTTATA
TGTTTAAAG Coding sequence (CDS) from alignment at sc0000181:206487..208145- >TCONS_00014136 ID=TCONS_00014136|Name=TCONS_00014136|organism=Clytia hemisphaerica|type=CDS|length=1506bp|location=Sequence derived from alignment at sc0000181:206487..208145- (Clytia hemisphaerica)
ATAACTGCCACAGCTGACTCCATACAGATGGTTGTCGACCCTGGTACTGA
AAAAGTCCCTGCTGAAGATATTCAAGCTCAAACCGTACGACTTAATGTTG
CCGATATTCATGGCGTCAAACGAGATAAGCTTTCAAAACCTGCGGCTCCT
ATCAAACCTTCCATAAAAAGACGTAATTTACAGGCCAAAAAGACCACTCA
CAAAAGACGCACCTTTCAAAAGTATAAGGTAAAACGCACTAAGGATATTA
CGGCCACAAAGAAATCAAATGTTCATGAAAAAGAAATGCGTGTCAACGGA
CAGTCTGGGCATCTCCATGTTCACACTGACCATAATATAACAGCCGTCCA
TTCACAATCAGGGAAACTAGAAATCTATATAAAAAATCCAGACCACCATA
CCATAGAAGAAGAAGCAGCCGAACATCATCATAATAAAGTGAGCGTCGAA
GTGATCGCATCTGAAGCGTATAAAAAACATCAATTACCAAGTACTAAATT
ACCGGCATCGAAAATGAACTTGTTCCATATTGCAGACGTGACAGGTGTCA
AGAAATCGAAACTGATTCCAAGATCGAAATCAAGAAAAATGACGTAAAAG
ATGGCGGATGGAGCTTTGATCTTGACCTTTCTCTTCACAATGTTCACCAT
TCCTGTTTATTGCACGGAGGCGGAAGGTGGTAAAGCACATTTCCAAGTTC
ACAATAAAATGCAGGGAAATATGGCCATAGTAGCAACCAAGGCTAAAGCG
ATGATAACTGCCACAGCTGACTCCATACAGATGGTTGTCGACCCTGGTAC
TGAAAAAGTCCCTGCTGAAGATATTCAAGCTCAAACCGTACGACTTAATG
TTGCCGATATTCATGGCGTCAAACGAGATAAGCTTTCAAAACCTGCGGCT
CCTATCAAACCTTCCATAAAAAGACGTAATTTACAGGCCAAAAAGACCAC
TCACAAAAGACGCACCTTTCAAAAGTATAAGGTAAAACGCACTAAGGATA
TTACGGCCACAAAGAAATCAAATGTTCATGAAAAAGAAATGCGTGTCAAC
GGACAGTCTGGGCATCTCCATGTTCACACTGACCATAATATAACAGCCGT
CCATTCACAATCAGGGAAACTAGAAATCTATATAAAAAATCCAGACCACC
ATACCATAGAAGAAGAAGCAGCCGAACATCATCATAATAAAGTGAGCGTC
GAAGTGATCGCATCTGAAGCGTATAAAAAACATCAATTACCAAGTACTAA
ATTACCGGCATCGAAAATGAACTTGTTCCATATTGCAGACGTGACAGGTG
TCAAGAAATCGAAACTGATTCCAAGATCGAAATCAAGAAAAATGACGTAA
AAGATGGCGGATGGAGCTTTGATCTTGACCTTTCTCTTCACAATGTTCAC
CATTCCTGTTTATTGCACGGAGGCGGAAGGTGGTAAAGCACATTTCCAAG
TTCACAATAAAATGCAGGGAAATATGGCCATAGTAGCAACCAAGGCTAAA
GCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014136-exon-sc0000181-1575043694:207988..208145 | TCONS_00014136-exon-sc0000181-1575043694:207988..208145 | Clytia hemisphaerica | exon |
| TCONS_00014136-exon-sc0000181-1575043694:206487..207507 | TCONS_00014136-exon-sc0000181-1575043694:206487..207507 | Clytia hemisphaerica | exon |
| TCONS_00014136-exon-sc0000181-1510915933:207988..208145 | TCONS_00014136-exon-sc0000181-1510915933:207988..208145 | Clytia hemisphaerica | exon |
| TCONS_00014136-exon-sc0000181-1510915933:206487..207507 | TCONS_00014136-exon-sc0000181-1510915933:206487..207507 | Clytia hemisphaerica | exon |
| TCONS_00014136-exon-sc0000181-1491911889:207988..208145 | TCONS_00014136-exon-sc0000181-1491911889:207988..208145 | Clytia hemisphaerica | exon |
| TCONS_00014136-exon-sc0000181-1491911889:206487..207507 | TCONS_00014136-exon-sc0000181-1491911889:206487..207507 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000181 | supercontig | sc0000181:206487..208145 - |
Blast
The following BLAST results are available for this feature:
|
