TCONS_00014126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014126
Unique NameTCONS_00014126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length940

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014126 ID=TCONS_00014126|Name=TCONS_00014126|organism=Clytia hemisphaerica|type=transcript|length=940bp
TGACGTCAATGTATTATGATGTCCTTGCATTGGGTTTATATTTAGCAATG
CGAACAGTAGAATTTGTCacaaacttttttctttgacCTTCTTCTCCATC
ATGCAGGGCAGATCTTCAACAATATGATCCTAGAAAGGCGCTGATTTGTC
CAGCAACCTATAAGCTGACAAACGATGGCACACCTGCTAACCCTTTTGTT
GTTGAAAGTTGCATTGTGGGAATCCTCATTCGctatattttgtaattctg
aTCTCGGTGGTCTTCTGGATTGCGAAGACAAAGACTTTGGTGATTACCGT
CAGAAATGTATGGTCACAATAGTGAAATATAGTGGAGGAACCATCACCAC
TCCACAATGCATGCCTAATTCAGCATCATTAGAAAGATGCGGAACAAGTT
TTACCAGATTCGACGTGTTGTTGTGATACAGACAGTTGCAACAGTCCTGA
CTTCATTACGAACTGTGGATTTGAAGAGTATGTAGAGCAAGGCtttaaat
gttttcaaaatgtaACAACGAACGGGGTGGAAGAACTATCTTCAAAACAA
ACATGCAGCAATAGATTATTTGGAGGGTTCAAGGACAAGTGCATGTATTA
CAAGCTACAGAACGAAACCGTCACTACTACGACGCAATCTTGTTTTCCTG
AAAATGCTGACTTTGCATGTGGAGAAACCATCACTAAGGGTAACCAAGAA
GGCAAAGTTTGTTGTTGTGATGAACCATTTTGTAATGATGATGAATTCAT
TGCTACATGTTTTCCACCTAACTCGAGTGTTTTGACAAAAACAAACATAT
TCTTATTACTACTTGTTGCCGTACTTCACATCATACGCGTGATAAACTAA
AAATACTTATATATACACCATAAATTTTTTAGGcattttgaattcattta
gAATAGAAAAAAGATATCGAATAAAAGCATTAACGAAAAA
Run BLAST on NCBI

transcript from alignment at sc0000181:72458..78404-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014126 ID=TCONS_00014126|Name=TCONS_00014126|organism=Clytia hemisphaerica|type=transcript|length=5947bp|location=Sequence derived from alignment at sc0000181:72458..78404- (Clytia hemisphaerica)
TGACGTCAATGTATTATGATGTCCTTGCATTGGGTTTATATTTAGCAATG
CGAACAGTAGAATTTGTCACAAACTTTTTTCTTTGACCTTCTTCTCCATC
ATGCAGGGCAGATCTTCAACAATATGATCCTAGAAAGGTATTAAAAGCAT
GTTTTTTGTTGTTCTTTCATATTCCTGGGTTCAAGGGCTGTTGGACGCAT
TCATACCTACACCCCCTTCTCACAGACCCACTAAGACTCCTTCCCACTGG
AAAATTGGCCAAAATATCGTCCCCGGTGGAAAATTACTCTCAAATTTTTG
TCCCCGCTGAAAATACACTGCGAAGGAAATGTCATGCTAATTTTTCCATC
CCCACTTAATTTTCTTGCTTGAAAACAATGGAATTCAAATCCCCAGCTAT
AAAAAAACATGGGGCTATCAATTCCAATCAAGTTTTTGTCTGGGTTTGTT
AGAGTGGGTGTATACTTTATTATGAAAGTGTCTTTCAGTAGATTCATAAA
TTTTAAAAATCTAAAAAGATGGCAATTTGTTGCAAGAAAAATTCTCTCCC
TTTACTGTATATTGGAAACAAGTTTGTCACAGTAAAATCTTCTTCACATA
ATATTGATTAAAATGTAAGTTTACTAAAATGTACTTTTAACATATCTACC
CCTGCTAGGTATCTTTGGTTTGTTGATTTGGGGTTATACTTTCTCTTATC
AGTGCTCATTTCTCAATATCACCTTAGTTCTTTCCCAAATGTTAAGTCCA
TTTTTAAGACAGCTTGTTCCTGATTTTCCCATAACGTGACCTTTCGACGA
AGGTATCGTGGATGCGGAACTTTTTGAAAAATCCACCCGACTTTCGACCC
TCGGACCCTTATCGGGACTAAAAAGAAAAAGGAAAATTTTGTGAATTTTA
GGACTCTTATTGGGACAAATTTGATCAATTTTGACCAAATTCTGATCTTT
CCAGGGGTAAAAAGTTGAACTTTTCCTATTTTTCCGAGCCTTAGTGGGAC
TGAAATTTGATTTTCTGATTTTTCCGACCCTTAGCGGGACTTAAAAGATA
CCCTTAAGGGCGGCACATACCGTACCCTCCATTTGCCTAAGTACCCCCCG
GGGGTCTGGTCTACATTTACCCAACATTCCCCAACCCTAGTTCCCCGGAA
TAATACCGTGAAGGATAAATGAAAACCTGGGAACTTCATTTTTGTATTCC
TTGTAGGCGCTGATTTGTCCAGCAACCTATAAGCTGACAAACGATGGCAC
ACCTGCTAACCCTTTTGTTGTTGAAAGTTGCATTGTGGGAATCCTCATTC
GCTATATTTTGTAATTCTGATCTCGGTGGTCTTCTGGATTGCGAAGGTAA
CGAANCTAAGGATCGAAAGACCTTTTTAAGATTCTACATTCTAGACTAAG
GGTCCAAAAACCTTTCTAATATTCCACTCTCCGGGCGAAGGCTCCAAAGA
CCTTTGTAATATTCCACTTACCTGGCGATGGTTCCAATGATTTTCCGAAA
AAGATTCCTATCCTGGACTTAGCTTCTGAGGACTTTTCTGGGGATAACAA
TATTTTAAAAGAGCCCTTCACGGGGGGGGGGGGGGGGAGAGCACCTTTTT
ATGTCAGCCTCTTTTTCAAAGGTTTGGACCCTACCATGAGTATAAATTAC
GAACACACACGGGGAACATACATTTGTTTGAGTTATGGAGTAAGGTTCAT
AAGGTATTGTTAACTGAAGGGACAATAAAATTCGTTCAAACTATGGAGTC
TTTCGAGTTTCAAGTTAAGGAGACTCCACATGATAAACCAATTCTCATAG
TTACTCGATTTTTTATTTTGAAAATCAATATTTTTTAACTTCTTCATTCA
GACAAAGACTTTGGTGATTACCGTCAGAAATGTATGGTCACAATAGTGAA
ATATAGTGGAGGAACCATCACCACTCCACAATGCATGCCTAATTCAGCAT
CATTAGAAAGATGCGGAACAAGTTTTACCAGATTCGGTAACACCACAACG
GTAATAATTTTATTCTTTTTACAGTTACGCAAAAAAATTTATCAAAATTT
GCCAAATTGCTGTGGCAGATATGCTCCAGCAAATGGGGGGGGGGGGGAAA
AAAATTTTTTTAAAATTTTTAAAATTTCAGTGGCAATTTTGTCCCACAAA
AGGGGGGGGGGGGTGAAAATAATGCTTTGAACTCGATGGGGATTGATATT
GTCATAATTTCTATGGCTGAGGGTTTAAATTCCATTGTTTTAAAGTCAGC
ATTCAGTGGGGATGGGACAACAGCATTATATTTTGCAGTGAGGATTCTTT
TATTTGATTATTTTCAGTGGGGGGGGGGGCAAATATTGGAGTATAAGTTT
CCACTAGGGAGGATATTTTGGCCAATTTTTCCAGTAGGATGGGGTCCCAG
TCAGTCTGTGCCACTAACTCGATCGGGAAGATTCTTCCGAAATGGGAAGA
TTCATCCGAAATGGGATGAACCTTCCCGAACGGGAAATTAACTTGACACC
CAAACGGGTAAGATTAAAAAAACGGACTTCCAGCTTGGGAAAAAGCGGGA
AAATAAGGAAAACTGGATCGGGTTGGAACTTCCCGCTTGGGAAGTTTACG
CAGTTTTTTCACAATTTAACAAGAATTCTACGGTAAAGTTTACTTTTCTT
TCGGTGAAAAACCTTAAAATTTGATGCTTTTTCACATCCAAAAAGTTTCA
ACTTTCGCCGGTCATCGTACAGCTTCGCCGAAGATTCAGTCAATTTTCAA
CTTCCCAAAGAGGAAGAATCTTCCCAAACGGGCAGAAAAAGTTAGAGTAA
GTTCTTCCCGTTCGGAAAGGTTCTTCCCATTTCGGAAGAATCTTCCCGAT
CGAGTTAGTGGCACAGACTGCCAGTGGGTCTGTGATTATTTTCCCCCGTT
TGAGTTCAAATTAGCGAGAGTCATGGCGTTCCAAAGTTAGATTTAGAACG
CCATGACGAGAGTCAAATGTATCTTACGTTTTGAATACTGCTAATTTGTT
TTATCGCTTTAGACGTGTTGTTGTGATACAGACAGTTGCAACAGTCCTGA
CTTCATTACGAACTGTGGATTTGAAGAGTATGTAGAGCAAGGCTTTAAAT
GTTTTCAAAATGTAACAACGAACGGGGTGGAAGAACTATCTTCAAAACAA
ACATGCAGCAGTAAGTTTATTGTTTGGATAGCCTTTTTCATAACTTTAAA
GTCACGAACAACCGAGCTGGGGACCTCGTTTTCAAAATATTTCTATGGTA
ATTGATTCCCAGAGGAGCTCGTAAGCAGTTTACTCTATTTATAAAAGTAA
CATTTCAAGACTCAAGGGATATAATCATTTAAGTGGCTGCGTTTAGACCA
TTGAGTTTAAAGCCCAAAGGGCTAGAGTTCAATCTCTAACCTTTCCCAGG
CAAGAAAAAGTGAAGCCTTAAAAAATGCGCCGCATTTTTGACAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAATTCCTTTGTTTACGATTGATATTTTTTTCG
AAATTTAGCGGTAAATTTTAGTTTCAATCTGTCATTTGTGTAAAAACCAG
GCGAGCCGCTCAAGGCCCCGCAACTTTGGTAGGATTTGTTGGCTTCAAAT
CCTCCCAAGGAGATTGACTTCTAGCCCTTCGGGCTTATATTTCATTGGTT
TAGACAAGCCTGGCATTTGTAATTGCTTGCAGTATTCTTTCAAATTCTAT
TGTTCCGCGCAATTGTTCGGTTTGTCAAATGTCTAATGATGCCAGCGTGT
TGGCATTTCGTTGGCATTTGAAATGCCATTTTGAGCAAAGGAATCCCCTT
TTCTGGCATTTCAAATCAAACAAAGGAACCAAAACAAAGAGAAAAAATGA
CATTTTTGATTTTTTTAAGTATTTGCACGTTTTTTATTCAGTTCTTTCTA
TAGATTGTAAAGATTTGCAATAGCCTAGCCCTACGGCAAAAAGTTTCAGT
CTTAATGACTGCAGTTTTTGAGAAATTCCATGTTTTTCATTGTTTGATCT
GTCAAAGTCGAACTTGAGGGAATCACCTTTTCAGTAATGACTCTAAAAAG
ACGATTCCTTAAATGCCATGACAGAAAATACAATGGAAAAGCTATTAAAA
TCGAATCCCTCATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGGGATTTTTTTCCATTTTCTAGGGGGGGGACC
AACCTACTAGGACACTATGACTTTTGTACTTTTTTTCGGACTTTTTTGTA
AGAAATATCTACTGCTAATTCAGTGTTTGATGGCGAGTGTTAGGAGCCTC
GTACGCCCCTGTAACAATCGGCGAATTAGTTCGATCCGTCTAGGTCATTA
GATGGCCAAATTTACCTCGCCAAGGATAAATGAAGTAACTTCGGCCAACC
TATAATAGTTTGCAGGAACCTTGTCTATGATACTTGTTGTGCGTTATTAT
CAAAATATTTTTTTTGAAAAATTTGATGGTTCGTTATATGATCTTAGTTT
TTTGAAGTGTGTTTACCGGTCATTTAGGACTGGAGTTTTTTTAAGAGGGT
TCGATTTATTACTAGACGTTTTAGTAGATACTTATAAGTCACACCAAAAC
CTTGTTTTCTTCTTTAGATAGATTATTTGGAGGGTTCAAGGACAAGTGCA
TGTATTACAAGCTACAGAACGAAACCGTCACTACTACGACGCAATCTTGT
TTTCCTGAAAATGCTGACTTTGCATGTGGAGAAACCATCACTAAGGGTAA
CCAAGAAGGCAAAGTTTGTTGTTGTGATGAACCATTTTGTAATGATGATG
AATTCATTGCTACATGTTTTCCACCTAACTCGAGTGTTTTGACAAAAACA
AACATATTCTTATTACTACTTGTTGCCGTACTTCACATCATACGCGTGAT
AAACTAAAAATACTTATATATACACCATAAATTTTTTAGGCATTTTGAAT
TCATTTAGAATAGAAAAAAGATATCGAATAAAAGCATTAACGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007908XLOC_007908Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014126-exon-sc0000181-1575043694:78268..78404TCONS_00014126-exon-sc0000181-1575043694:78268..78404Clytia hemisphaericaexon
TCONS_00014126-exon-sc0000181-1575043694:77059..77198TCONS_00014126-exon-sc0000181-1575043694:77059..77198Clytia hemisphaericaexon
TCONS_00014126-exon-sc0000181-1575043694:76419..76553TCONS_00014126-exon-sc0000181-1575043694:76419..76553Clytia hemisphaericaexon
TCONS_00014126-exon-sc0000181-1575043694:75245..75392TCONS_00014126-exon-sc0000181-1575043694:75245..75392Clytia hemisphaericaexon
TCONS_00014126-exon-sc0000181-1575043694:72458..72837TCONS_00014126-exon-sc0000181-1575043694:72458..72837Clytia hemisphaericaexon
TCONS_00014126-exon-sc0000181-1510915933:78268..78404TCONS_00014126-exon-sc0000181-1510915933:78268..78404Clytia hemisphaericaexon
TCONS_00014126-exon-sc0000181-1510915933:77059..77198TCONS_00014126-exon-sc0000181-1510915933:77059..77198Clytia hemisphaericaexon
TCONS_00014126-exon-sc0000181-1510915933:76419..76553TCONS_00014126-exon-sc0000181-1510915933:76419..76553Clytia hemisphaericaexon
TCONS_00014126-exon-sc0000181-1510915933:75245..75392TCONS_00014126-exon-sc0000181-1510915933:75245..75392Clytia hemisphaericaexon
TCONS_00014126-exon-sc0000181-1510915933:72458..72837TCONS_00014126-exon-sc0000181-1510915933:72458..72837Clytia hemisphaericaexon
TCONS_00014126-exon-sc0000181-1491911889:78268..78404TCONS_00014126-exon-sc0000181-1491911889:78268..78404Clytia hemisphaericaexon
TCONS_00014126-exon-sc0000181-1491911889:77059..77198TCONS_00014126-exon-sc0000181-1491911889:77059..77198Clytia hemisphaericaexon
TCONS_00014126-exon-sc0000181-1491911889:76419..76553TCONS_00014126-exon-sc0000181-1491911889:76419..76553Clytia hemisphaericaexon
TCONS_00014126-exon-sc0000181-1491911889:75245..75392TCONS_00014126-exon-sc0000181-1491911889:75245..75392Clytia hemisphaericaexon
TCONS_00014126-exon-sc0000181-1491911889:72458..72837TCONS_00014126-exon-sc0000181-1491911889:72458..72837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000181supercontigsc0000181:72458..78404 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31986	0.00388216	9.80632e-08	4.48068	0	0	0.499176	0.175246	0.040898	0	0.196682	0	0.0322779	0.100563	0	0	0	0.33609	0	0	0.000994419	0	0.584975	1.48442	1.7871	9.81809	0	0.0710225	0.494009	1.05215
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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