TCONS_00014110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014110
Unique NameTCONS_00014110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014110 ID=TCONS_00014110|Name=TCONS_00014110|organism=Clytia hemisphaerica|type=transcript|length=822bp
attatatatgacaaaaaaaagcaataaaacaACAATGATAGACCAATACA
GTCTCTTAGTTGGTTTGGGATTCGGATTTGTCATCgggtatttcattttc
aaaaaagaaaaatcaagtgtTGAAGTTGAATCAAaggatATTGATTATTC
AGCTCAAACGTTTGATGAATTCAAAATGATTCTAGTGGTAAGACAAGATT
TGGGAATGGGAAAAGGAAAGATCGCAGCCCAAtGTTGTCATGCTGCTGTT
GATGTCTacaataaagcaaaaaagaaacATCCTCAGtgggttaAAACATG
GGAACAAGTGGGATGTCAAAAAGTTGCATTGAAATGCCCTGACGAGGAGA
CAATGATTGCATTACAAACACACGCTGCGTCTCTTGGTTTAGACGCGCGC
ATCATACAAGACGCTGGACGAACACAGATACCCAGTGGTTCAAGAACTGT
CCTTGGGATTGGTCCAgCACCTTTCGAACTTGTGGATAAAGTGACTGGAC
ATTTGAAACTGCTGTGAAGATTTTGCTGTTTAGTATTCCACAATAACTCA
AATCAGGCTGTTGCAACATTCTCACAAACCAAAGGGTGAcatgaccttta
tttaaaaagtatttagaaattttcaaattttataataTTCACAGTCAGAA
TTTTTACTCTGTTTTACTAGGGATTTTTTTGTACATATCGTCATAGTTAG
AATATTTTTAATAAGGAAAATAGATCAGGTTGGAATTGTTGTGTTCAACT
ACTCCATGGTTTTTATCTTTAATTTACATAAACAAAAATCTCATTACTAA
ACATTTGATCAGAAGAAGTCTG
Run BLAST on NCBI

transcript from alignment at sc0000181:303344..308463+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014110 ID=TCONS_00014110|Name=TCONS_00014110|organism=Clytia hemisphaerica|type=transcript|length=5120bp|location=Sequence derived from alignment at sc0000181:303344..308463+ (Clytia hemisphaerica)
attatatatgacaaaaaaaagcaataaaacaACAATGATAGACCAATACA
GTCTCTTAGTTGGTTTGGGATTCGGATTTGTCATCgggtatttcattttc
aaaaaagaaaaatcaagtgtTGAAGTTGAATCAAaggtaaaatctttttt
tcatatAATATGGTAACGtgttatttattcattttcctGACACGTGCCCC
CATGGGGATTAATTTTACAGAACTTTTATGTTGTGCACTTTTTTGTTTaa
accttaaaatttcaaattctgtCCTATTAATAGAACTAACACTTTTCTTT
CATAGCACTTTCAAATAAATTAGCAGAAAGCCTCCTTGTGATGCCAAACA
CAATAGAAAATGGTACTCTATTTTAattatgattgtttttttttaggatA
TTGATTATTCAGCTCAAACGTTTGATGAATTCAAAATGATTCTAGTGGTA
AGACAAGATTTGGGAATGGGAAAAGGAAAGATCGCAGCCCAAGTATGTTA
ACATGTACATTAAATACCTTTGCTCACTTTCAAATGTTTAATGAataatg
atgatgataatgaaTGTAATTAAGAATCTTTTACACGAACTTGCTTCGTC
ACCTGAGAGTAGATATCTCCTGAATTTCTTGAGGAAGCTCAAATGGTTAT
CTATTTTAATATTGAAATCGTAAAAGTTGCAACTTTTCTGAATTTAGATG
GAAATCAGTCAAGTTATAAGATATTTCACTACAGTGAAATAGGGAAATCC
TGTAGGATAAGATAagcttttaaagaaagaaattttgaatactTTCTTTT
CTACTAATTTTGAGCTTTCCATCAAGATTCGCCAAAAATCGGTTGCATAG
ctgattcttaaaaaaaattgaaaaatatttttcagtgcTGATTACttaaa
tgagtaaatttttgcgggaattaaattttgcagattttgcgGATTTAGCT
GTCCTTTGCAAAATTCCCAGTGGAATGTCctattgaaaatttggaaaggt
CTTATCCGTAAATTCTTTttaacaaaactcaaaaattacttttaaaatgt
TAACTGGTATCAAAGAACCACTAATAAAGCATAAATGCAACAACCAGTTT
GTAAAATTTGACAGAAAATTTATCCAATTTAAAGTATGTTTTTTCATACT
CAACTTTTGAAATGAGGTTGGTTTGGTCAGCATAATATcgtcttaaaaat
attttttgattctgAATTACAGaatgttttttgtaatttaaagtGTTGTC
ATGCTGCTGTTGATGTCTacaataaagcaaaaaagaaacATCCTCAGGTA
TGGAAGTTTTTTAAAGGAGATTCGAAAGTGATTGATTGTGTAACTTCGTT
TAGATCtgttaatagaccttttcataaattacgtcgcGAACATCCTTTGC
CTCGTATTCAAGcaatttccatggtgatcatatctcttgagacattaaat
tattttttttatgaataccttaaaggaagaaattttggcggtaaTTTAac
ttggcggatggccgaaaaagttttttcacacggaatttaatttggcggat
ggacgaaaaaactaaatttggcgggaatttaatttggcggttgctgAAAG
ATTTAACCTTttaaatggcgtaaaaacagctaaaaaatagcaaaaaccaC
CTTTAAAGGgtacacattttcaaaaagtttaatttggcgggaatttaatt
tggcggatggcggaaaaaagaaattttggcgggaacttaatttggcggat
ttcggccaaatccgccaaattttttttctgccaaaatttcttccttttag
GTAGAAAGTAGTTGCAATAAAATCCGCTgagagttaatcaccatggcaat
aatttcaaaacgaggcaagtgatgttcgcgacgtaatttatgaaaaggtc
tattaccaATGGTAATGTTTAGAGGTCTATTACCAATGGTaatgtttatt
aatttttagtCAATTGTTAAAAACTTATATTTCACtgttttggacctacc
ccggtggaggtcctataaattaacctttgtccgtctgtccgtccgtccgt
tagttaccagcttttctcatgatcggctcattagttttttctgatttttt
gcacaatgatgcaaaatggcaatgcccaaaatgtgacggagcccgatttt
cgaaaaaaaaattttttggggcaaatttgggccaaaaaacggctaaaaaa
cgggttttttggactctgtgaaaaattggatcattaattttttctgattt
tttgcacgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNaaaaaacgcatgtttatctataagaat
cactattaataagcatacatcaatgttcttagtcaaattactcaattttt
ttatgagatagatgtttttttttctgctcatgagggctgacttttgaaga
atatgtgtgtttagacaggaaatttgggttgcttggcgtgttttcataga
caaactggccaaattcgatatttttttNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNctatttgtgttctgaatgattgtttaatggtcacgtcacgtagata
tcaattataaacgtgttaaatgcataatccaggtaggtccatcaaagtat
cacttgtttattttggggaaaatgtcaattttgtatttttttgtgaattt
gcacctttttttttccagtgggttaAAACATGGGAACAAGTGGGATGTCA
AAAAGTTGCATTGAAATGCCCTGACGAGGAGACAATGTGAGTAGAAAATA
TTGTTGTTTTGGTATATCTAGCAAATTAGGTGATTATAAACCGTTGTTGG
TTAAATGTTTAGTGTAAGTTAAGGCAGGAGGGACTAAaggcaaaaaagac
aaaatagggATCGCACACTTTTATATCAGAAAAACGAGGCTACAAAACTT
ACagtaaaaattaagaacaatatgAATGATTAAGGCCGATGGTGAGCTTA
AgttaattattttgttttaataaGTTGAGATATGTATGTATTTACGCTTG
ATTTATTGTGTTATCTTTTAATTGTATGCCAGTGTATGCAAAGAAAAGTT
AATTATTACTTGTTCCACTTTCATGTTTAGGATTGCATTACAAACACACG
CTGCATCTCTTGGTTTAGACGCGCGTATCATCNTTAGGATTGCATTACAA
ACACACGCTGCGTCTCTTGGTTTAGACGCGCGCATCATACAAGACGCTGG
ACGAACACAGATACCCAGTGGTTCAAGAACTGTCCTTGGGATTGGTCCAg
gtaaaataattataaaaaatacttacaataTTCAAAATTCTTCTTTCTCA
GGCGGATTTCTCAGCGAAGTATAATATTTATAACGGGCCTTTTATTACAT
ATTCGTCAACCCGTCGGCACCTCCCCTGAAACTTTTACAAGAAGATTGAA
ACTAGAAAATTCTTCCTCTTTTTAATGTTTAAACCAAcctttgaaaaatt
tgtcaaCTCTGATTCGTCATTAAAAGTCAGAGGCGTGCTTCCTTTTCTGT
atcataagaaatatttttcaaagaataatTACCTTGATCTGAAATTGAAT
GAAATGATTCCAGTCCCCTTATAAAGctcattttttaagaaacattttCT
GAAACTCATTTGCAGCACCTTTCGAACTTGTGGATAAAGTGACTGGACAT
TTGAAACTGCTGTGAAGATTTTGCTGTTTAGTATTCCACAATAACTCAAA
TCAGGCTGTTGCAACATTCTCACAAACCAAAGGGTGAcatgacctttatt
taaaaagtatttagaaattttcaaattttataataTTCACAGTCAGAATT
TTTACTCTGTTTTACTAGGGATTTTTTTGTACATATCGTCATAGTTAGAA
TATTTTTAATAAGGAAAATAGATCAGGTTGGAATTGTTGTGTTCAACTAC
TCCATGGTTTTTATCTTTAATTTACATAAACAAAAATCTCATTACTAAAC
ATTTGATCAGAAGAAGTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007903XLOC_007903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014110-exon-sc0000181-1491911889:303344..303479TCONS_00014110-exon-sc0000181-1491911889:303344..303479Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1510915933:303344..303479TCONS_00014110-exon-sc0000181-1510915933:303344..303479Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1575043694:303344..303479TCONS_00014110-exon-sc0000181-1575043694:303344..303479Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1491911889:303740..303835TCONS_00014110-exon-sc0000181-1491911889:303740..303835Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1510915933:303740..303835TCONS_00014110-exon-sc0000181-1510915933:303740..303835Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1575043694:303740..303835TCONS_00014110-exon-sc0000181-1575043694:303740..303835Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1491911889:304587..304640TCONS_00014110-exon-sc0000181-1491911889:304587..304640Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1510915933:304587..304640TCONS_00014110-exon-sc0000181-1510915933:304587..304640Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1575043694:304587..304640TCONS_00014110-exon-sc0000181-1575043694:304587..304640Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1491911889:307162..307229TCONS_00014110-exon-sc0000181-1491911889:307162..307229Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1510915933:307162..307229TCONS_00014110-exon-sc0000181-1510915933:307162..307229Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1575043694:307162..307229TCONS_00014110-exon-sc0000181-1575043694:307162..307229Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1491911889:307631..307743TCONS_00014110-exon-sc0000181-1491911889:307631..307743Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1510915933:307631..307743TCONS_00014110-exon-sc0000181-1510915933:307631..307743Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1575043694:307631..307743TCONS_00014110-exon-sc0000181-1575043694:307631..307743Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1491911889:308109..308463TCONS_00014110-exon-sc0000181-1491911889:308109..308463Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1510915933:308109..308463TCONS_00014110-exon-sc0000181-1510915933:308109..308463Clytia hemisphaericaexon
TCONS_00014110-exon-sc0000181-1575043694:308109..308463TCONS_00014110-exon-sc0000181-1575043694:308109..308463Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000181supercontigsc0000181:303344..308463 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.5811	21.7882	9.95449	9.65389	13.1122	6.91267	19.7559	20.9833	18.1926	14.9522	9.35702	11.3353	3.75286	5.10793	14.8469	21.9599	22.4419	20.7089	2.85277	3.28019	12.1951	9.32407	24.7046	24.9037	10.9626	9.35962	14.4775	12.2013	16.6585	18.8881
Blast
[Close]
BLAST of TCONS_00014110 vs. Swiss-Prot (Human)
Match: PTH2 (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 4.882e-46
Identity = 74/115 (64.35%), Postives = 89/115 (77.39%), Query Frame = 2 
Query:  167 EFKMILVVRQDLGMGKGKIAAQCCHAAVDVYNKAKKKHPQWVKTWEQVGCQKVALKCPDEETMIALQTHAASLGLDARIIQDAGRTQIPSGSRTVLGIGPAPFELVDKVTGHLKL 511
            E+KMILVVR DL MGKGK+AAQC HAAV  Y + ++++P+ +K WE  G  KV +K PDEET+IAL  HA  LGL   +IQDAGRTQI  GS+TVLGIGP P +L+DKVTGHLKL
Sbjct:   64 EYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 178
The following BLAST results are available for this feature:
BLAST of TCONS_00014110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTH24.882e-4664.35Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo s... [more]
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