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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014108 ID=TCONS_00014108|Name=TCONS_00014108|organism=Clytia hemisphaerica|type=transcript|length=2160bpRun BLAST on NCBI protein sequence of TCONS_00014108-protein >TCONS_00014108-protein ID=TCONS_00014108-protein|Name=TCONS_00014108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp MPEPHQQGTVPVVVDPYIALCLRPHQRQGVTFLYECVMDMRSEDCESPTYRun BLAST on NCBI transcript from alignment at sc0000181:127083..178033+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014108 ID=TCONS_00014108|Name=TCONS_00014108|organism=Clytia hemisphaerica|type=transcript|length=50951bp|location=Sequence derived from alignment at sc0000181:127083..178033+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000181:127083..178033+ >TCONS_00014108 ID=TCONS_00014108|Name=TCONS_00014108|organism=Clytia hemisphaerica|type=CDS|length=24660bp|location=Sequence derived from alignment at sc0000181:127083..178033+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014108 vs. Swiss-Prot (Human)
Match: RA54B (DNA repair and recombination protein RAD54B OS=Homo sapiens GN=RAD54B PE=1 SV=1) HSP 1 Score: 585.104 bits (1507), Expect = 0.000e+0 Identity = 323/702 (46.01%), Postives = 427/702 (60.83%), Query Frame = 2
Query: 134 WEGDGVLVVKNNKLATLYDTQGNQICKSSGCKSSDLAALEDGSLIKFSGKEVEIQNSISPEDYQNGNCFTSAAQNDDLKENTHSSPSSATKTKAIT-PFKPI-KSDVKSNHKK--TSLKPRHNPNAEGALVMPEP---HQQ-------GTVPVVVDPYIALCLRPHQRQGVTFLYECVMDMRSEDCESPTYGAILADEMGLGKTIQCISLIWTLLKQGIYG-RPTVKNVIVVTPNSLAKNWSKEFCKWLGSERLNPFVVSSTNRVDEFLLRPNNQVMIISYEMVTRCIEDIRKVAFDLLVCDEAHRLKNTNVKITSIISGLQIPKCILLTGTPIQNNLEEFHTLADLACPGVFGTISAFRRNFIEPITRAQQPGCTADDKQLSETCLQNLTEIMNRFCLRRTSEVNQKHLPPKVEYVVFVRMSSLQRTLYNSLIQSTLYTDCMSNQESGSKHLLCIGALKKLCNSPHILRQFV------------ENKTDCKNQIFXXXXXXXXXXXXXXXCCKLQVVHSLISSFRTNK--EKVLLVALSTKVLDILAKFCDSIEIKYVRLDGKMTADQRQSSIDRFNDKSSNIMVFLLSSKAGGVGLNLTAASRLILYDIDWNPANDLQAMARIWRDGQKKKVHIYRLLVNGSIEEKIYQRQIIKNNLSGTIVD-SLANNKVCFSTEQLKDLFKLRESESCHTHDLLQCQC 2149
WEGD VL+VK K L + +G I + G K +L +E+G + GKE+E+ ISP+D+ +G CF + T S SS K + PFK + K K N + + KPRH+P +LVMP P HQ V VV+DPY+ LRPHQ++G+ FLYECVM MR GAILADEMGLGKT+QCISLIWTL QG YG +P +K ++VTP SL NW KEF KWLGSER+ F V ++V+EF+ V+IISYEM+ R ++ I+ + FDLL+CDE HRLKN+ +K T+ + L K I+LTGTPIQN+L+EF L D PG+ G++S++R+ + EPI +++P + ++K+L E LT + F LRRT E+ K+LPPK+E VVF R +LQ LY L+ S + C+ S HL+CIGALKKLCN P +L + E K+ K + D+ P ++ KLQV+ L++ + EKV+LV+ T+ L+IL + C Y RLDG+ QRQ +D FN + S+ +FLLSSKAGGVGLNL S LILYDIDWNPA D+QAM+R+WRDGQK VHIYRLL G+IEEKIYQRQI K L G +VD + + + FS E+LK+LF L ES C THDLL C+C
Sbjct: 141 WEGDAVLIVKG-KSFILKNLEGKDIGRGIGYKFKELEKIEEGQTLMICGKEIEVMGVISPDDFSSGRCFQLGGGS------TAISHSSQVARKCFSNPFKSVCKPSSKENRQNDFQNCKPRHDPYTPNSLVMPRPDKNHQWVFNKNCFPLVDVVIDPYLVYHLRPHQKEGIIFLYECVMGMRMNG----RCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTLHESSDCVTHDLLDCEC 831 The following BLAST results are available for this feature:
BLAST of TCONS_00014108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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