TCONS_00014105 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014105
Unique NameTCONS_00014105
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014105 ID=TCONS_00014105|Name=TCONS_00014105|organism=Clytia hemisphaerica|type=transcript|length=1726bp
GTATATCTTTTTGAGGTTTTCAGTTCGTTTCACTGGGTAGTAATTATATG
TAATATGTTTATGATGTATTCTGTCGTCTCgtcaatttgattttcaaacc
aTTCAACGAAGTATTAATTGTTTCAAACGTTTGCATTACTTCACTTTCAT
TTTGACTCGAACTAATCTCATATTTCTTTACCAAATGGTATAATGCGATT
TTCAATTCCATCATTGCGAAACGTTGCCCGACACAGTTTCGGGGTCCGGC
AGAAAACGGCGTAAACAGAAAACTGTTTCTACCTTTCTTCCGTTCATCGA
AGCCTTCAAACCTTTCAGGATAAAACTTTTTCGGGTTTTCCCAATTCTCT
GGATTATGATTTACAGCTTTCAAGTCGACCATCAATGAGCATTTTGGGAA
GACTTTGCCACCAAGAACAGAGCCTTCTGGGATAGCCCTTTGAAAAGAAT
TAGCAATAACGTGGAGCCGtaacgtctctttaatcaccCAATCAAGATAC
TtcagatttctcaaattttcaaatgctTCGAACGAACCATCAAAGCGGTT
GATTTCCTCAAAAAGTTTCTCTTGGCGGTCTCGATTCCGCCCTAAACAAT
ACAAAGCAAATGAAAGGGTAGAGGCCGTCGTTTCATACCCTGCAAATATC
ATTGTCCCAACCTCATCTACAATCCCTTGCACGTCAATCTCACCTTTCTC
AAAAGAATCTAACAACACATCAATAAAAATCTTCTGCTTCTCTACACTAT
TAACCTCTAACCCTTCTTTGCGAAATTTTACTCTATCCTCGATGATGATT
TGGACCAAATAACGTAATGCATCTCGCTGACTTAATTGCAGTTTTCCTTC
TGATGAGAAAGCgtatattttttcattccataGCCAAGGTCTTTTAAAGC
GATTCATAAAGTAAACAGAAGCTTTATCAAATATAACCTTGATATTTGGC
CCATTGTCTTTCGTTGTAGGATCTATTGTTAAAGGTACGTGTTTTCCCAT
AGCAGTGTCACAAATAACTGCCATCGTAAACTGCTTTGAAAAGTCAACAA
TGTCAAATTCACGCCCATCTTCAGCGTACTTTTGAAGCAGGTTAACAAAT
TCCACCGAAATTTTCTCAACAGCCGGCATGAAATTACATAAAAGGTCNAG
GTTAACAAATTCAACAGAAATTTTCTCAACAGCCGGCATGAAATTACATA
AAAGGTCGTAATGAAAAGTTGGGACCACTAGTCTACGTCTTGTTTTCCAT
AAATTCCCACTACTACAGGCTAGTCCGTCACCTATGAGTGTTCTGACAAA
GCGATATGAATTTGATTTTGTATTATACTTAGGGTTACTCATAAAATCTT
CAATGACTTTGATGTTTGATGTTATAACTAGTTTGTCCGTTAACAAGTAT
AACCCAAAAGTCCCGTCATAATCAATTGCCCATTTGTCACAGAGATTTCG
GATCTTCTTCAAATCGATCAGATAAGGAATATGCCCAATAAGAGGCCAAT
GGCCGTCTACAAATGGCACAGTGACTTTGTTGTTGCTACGGGTGAAAACA
TATTTCCACCAAAGAATCAATAAGATTGTTGCTGCACCAAACACAAGTGT
AGAAGCCAATACAATATCCATAatatttgttttagctttattaATCTAAA
GGTAAAGtatcaaaaaattaaatataaaaaGCTATGGTAGACCGATTTGT
AATGCGTTCTGTTTTCTACCCcgatt
Run BLAST on NCBI

transcript from alignment at sc0000181:47736..49461+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014105 ID=TCONS_00014105|Name=TCONS_00014105|organism=Clytia hemisphaerica|type=transcript|length=1726bp|location=Sequence derived from alignment at sc0000181:47736..49461+ (Clytia hemisphaerica)
GTATATCTTTTTGAGGTTTTCAGTTCGTTTCACTGGGTAGTAATTATATG
TAATATGTTTATGATGTATTCTGTCGTCTCgtcaatttgattttcaaacc
aTTCAACGAAGTATTAATTGTTTCAAACGTTTGCATTACTTCACTTTCAT
TTTGACTCGAACTAATCTCATATTTCTTTACCAAATGGTATAATGCGATT
TTCAATTCCATCATTGCGAAACGTTGCCCGACACAGTTTCGGGGTCCGGC
AGAAAACGGCGTAAACAGAAAACTGTTTCTACCTTTCTTCCGTTCATCGA
AGCCTTCAAACCTTTCAGGATAAAACTTTTTCGGGTTTTCCCAATTCTCT
GGATTATGATTTACAGCTTTCAAGTCGACCATCAATGAGCATTTTGGGAA
GACTTTGCCACCAAGAACAGAGCCTTCTGGGATAGCCCTTTGAAAAGAAT
TAGCAATAACGTGGAGCCGtaacgtctctttaatcaccCAATCAAGATAC
TtcagatttctcaaattttcaaatgctTCGAACGAACCATCAAAGCGGTT
GATTTCCTCAAAAAGTTTCTCTTGGCGGTCTCGATTCCGCCCTAAACAAT
ACAAAGCAAATGAAAGGGTAGAGGCCGTCGTTTCATACCCTGCAAATATC
ATTGTCCCAACCTCATCTACAATCCCTTGCACGTCAATCTCACCTTTCTC
AAAAGAATCTAACAACACATCAATAAAAATCTTCTGCTTCTCTACACTAT
TAACCTCTAACCCTTCTTTGCGAAATTTTACTCTATCCTCGATGATGATT
TGGACCAAATAACGTAATGCATCTCGCTGACTTAATTGCAGTTTTCCTTC
TGATGAGAAAGCgtatattttttcattccataGCCAAGGTCTTTTAAAGC
GATTCATAAAGTAAACAGAAGCTTTATCAAATATAACCTTGATATTTGGC
CCATTGTCTTTCGTTGTAGGATCTATTGTTAAAGGTACGTGTTTTCCCAT
AGCAGTGTCACAAATAACTGCCATCGTAAACTGCTTTGAAAAGTCAACAA
TGTCAAATTCACGCCCATCTTCAGCGTACTTTTGAAGCAGGTTAACAAAT
TCCACCGAAATTTTCTCAACAGCCGGCATGAAATTACATAAAAGGTCNAG
GTTAACAAATTCAACAGAAATTTTCTCAACAGCCGGCATGAAATTACATA
AAAGGTCGTAATGAAAAGTTGGGACCACTAGTCTACGTCTTGTTTTCCAT
AAATTCCCACTACTACAGGCTAGTCCGTCACCTATGAGTGTTCTGACAAA
GCGATATGAATTTGATTTTGTATTATACTTAGGGTTACTCATAAAATCTT
CAATGACTTTGATGTTTGATGTTATAACTAGTTTGTCCGTTAACAAGTAT
AACCCAAAAGTCCCGTCATAATCAATTGCCCATTTGTCACAGAGATTTCG
GATCTTCTTCAAATCGATCAGATAAGGAATATGCCCAATAAGAGGCCAAT
GGCCGTCTACAAATGGCACAGTGACTTTGTTGTTGCTACGGGTGAAAACA
TATTTCCACCAAAGAATCAATAAGATTGTTGCTGCACCAAACACAAGTGT
AGAAGCCAATACAATATCCATAatatttgttttagctttattaATCTAAA
GGTAAAGtatcaaaaaattaaatataaaaaGCTATGGTAGACCGATTTGT
AATGCGTTCTGTTTTCTACCCcgatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007900XLOC_007900Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014105-exon-sc0000181-1491911889:47736..49461TCONS_00014105-exon-sc0000181-1491911889:47736..49461Clytia hemisphaericaexon
TCONS_00014105-exon-sc0000181-1510915933:47736..49461TCONS_00014105-exon-sc0000181-1510915933:47736..49461Clytia hemisphaericaexon
TCONS_00014105-exon-sc0000181-1575043694:47736..49461TCONS_00014105-exon-sc0000181-1575043694:47736..49461Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000181supercontigsc0000181:47736..49461 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0529594	0	0.0617745	0.146315	0.930785	1.37462	1.41444	1.69082	1.51243	0.737563	0.694995	0.716172	0.566299	0.680494	0.34981	0.0265002	0.778206	0.608397	0.0549761	0.0335545	0.119489	0.0551813	0.20444	0.0265126	0	0	0	0
Blast
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BLAST of TCONS_00014105 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 6.008e-59
Identity = 149/499 (29.86%), Postives = 253/499 (50.70%), Query Frame = -1 
Query:   74 VPFVDGHWPLIGHIPYL-IDLKKIRNLCDKWAIDYDGT--FGLYLLTDKLVITSNIKVIEDFMSNPKYNTKSNSYRFVRTLIGDGLACSSGNLWKTRRRLVVPTFHYDLLCNFMPAVEKISVEFVNLDLLCNFMPAVEKISVEFVNLLQKYAEDGREFDIVDFSKQFTMAVICDTAMGKHVPLTIDPTTKDNGPNIKVIFDKASVYFMNRFKRPWLWNEKIYAFSSEGKLQLSQRDALRYLVQIIIEDRVK-------FRKEGL-EVNSVEKQKIFIDVLLDSF--EKGEIDVQGIVDEVGTMIFAGYETTASTLSFALYCLGRNRDRQEKLFEEINRFDGSFE---AFENLRNLKYLDWVIKETLRLHVIANSFQRAIPEG-SVLGGKVFPKCSLMVDLKAVNHNPENWENPKKFYPERFEGFDERKKGRNSFLFTPFSAGPRNCVGQRFAMMELKIALYHLVKKYEISSSQNESEVMQTFETINTSLNGLKIKLTRR 1519
            +P V   +PL+GH   +  D ++      ++  +Y       L++    +V   N + +E  +++ K   KS+ Y+F+   +G GL  S+GN W++RR+++ PTFH+ +L +F+     I  E  N+                 V  L+K+  +   F+   +     + +IC+TAMGK+    I   + D+   ++ ++  + + F  R K PWLW +  Y    EG         L      +I +R          R +G     S  K++ F+D+LL     E   +  + I +EV T +F G++TTA+ ++++LY LG N + Q+K+  E++   G  +     E+L+ L+YL+ VIKETLRL      F R++ E   V G +V      ++   A++ +P  + NP++F PERF  F E  +GR+ + + PFSAGPRNC+GQ+FA+ME K  L  +++ + I S+Q   E+    + I    NG+ IKL RR
Sbjct:   50 IPTVARAYPLVGHALLMKPDGREFFQQIIEYTEEYRHMPLLKLWVGPVPMVALYNAENVEVILTSSKQIDKSSMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFL----DIMNEQANI----------------LVKKLEKHI-NQEAFNCFFYITLCALDIICETAMGKN----IGAQSNDDSEYVRAVYRMSEMIF-RRIKMPWLWLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERF--FPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSNGIWIKLKRR 520
The following BLAST results are available for this feature:
BLAST of TCONS_00014105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP4V26.008e-5929.86Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1... [more]
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