TCONS_00014102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014102
Unique NameTCONS_00014102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length815

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014102 ID=TCONS_00014102|Name=TCONS_00014102|organism=Clytia hemisphaerica|type=transcript|length=815bp
ttaaaagTTGCGTTgttattttaaaaagcaatttactACACTGAAACTTA
CATTCAAGTTCAAAGATGTCGAGTTTCTGCATGTCAGTGTTTGTTGTTGT
GATCAAGTTACAGTTCCTATTGCAAACAAAGTATGGTAATAAAACCACAT
TCATTTCGtttgatatcctcaacagtggcaTTTGTTGTGACTGTCGGGCT
TTTGGATTGACATTAGTGTATTGGAATACAAGGATTTTTCAACATGCCAC
ACCTTCGGATCCACACTAATCTCACTAAAGATCCCTTCACTGAAGAATTC
ATCAAAAATGTCACTCAAAAACTTGCCAGTGTCATGTCACTACCTCCAGC
ACATGCACCTGTATTTTCATTAAGTGTTGGCGAAACAATGTACTACATGG
GCAGCTATGAACCTTCAGCATTTATCACCTTTGCAACGCTGGGTGACTCG
CCAAAAGAAGAAATGAACCAACAATGCGCTGAAGTCATCTTCGAAGCAAT
GAAAGACATTGGGGTACCACAAAACAGGATTGATATTGTCTTCAATGTTT
ATCCCAAGAGCTGTGTTGCCATGGATGGGAAACTTTTCTCGAAATGGAAA
TTTGATTAGTTTTGCTTGTAATTTGTCATTTTATTTaggagaacatttta
agaaatagAAACTGTTTAACCATTTTAATAGGATtttatcgaaaattttt
gaaattattttctacTGCATTTAATAGATTTACCTATACTAAACTATCTT
GAGAATGTATCTTCAGGTGATTgtcatctttttttattttgactaaGTAG
CCTCAGTTATCACAT
Run BLAST on NCBI

protein sequence of TCONS_00014102-protein

>TCONS_00014102-protein ID=TCONS_00014102-protein|Name=TCONS_00014102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MPHLRIHTNLTKDPFTEEFIKNVTQKLASVMSLPPAHAPVFSLSVGETMY
YMGSYEPSAFITFATLGDSPKEEMNQQCAEVIFEAMKDIGVPQNRIDIVF
NVYPKSCVAMDGKLFSKWKFD
Run BLAST on NCBI

transcript from alignment at sc0000181:38893..44509+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014102 ID=TCONS_00014102|Name=TCONS_00014102|organism=Clytia hemisphaerica|type=transcript|length=5617bp|location=Sequence derived from alignment at sc0000181:38893..44509+ (Clytia hemisphaerica)
ttaaaagTTGCGTTgttattttaaaaagcaatttactACACTGAAACTTA
CATTCAAGTTCAAAGATGTCGAGTTTCTGCATGTCAGTGTTTGTTGTTGT
GATCAAGTTACAGTTCCTATTGCAAACAAAGTATGGTAATAAAACCACAT
TCATTTCGtttgatatcctcaacagtggcaTTTGTTGTGACTGTCGGGCT
TTTGGATTGACATTAGTGTATTGGTATGAagttttacttttaaaattacT
TTCACCTTTCTTAAAGAGTTATTTTTTCCCCATTTACTTTGTCTCTGTTA
TTGAATAGGATATTCTACCGTGCATTACACTATATTTGCGTCTTTGTCTC
ACCAGACTAGTGTATACTCCTGGATGGACTTTGCTTGAACTTTGCTGAAC
TGctttattttaagttttgatgattttttgattttgctgaCGCTGAATCT
AGTGTGCCATTCAGTCTATCAAAATCCCTCCGGGTGGCATTCGGGCTATG
TCTCATCCctgagtttttacaagataattcactaattggtcatttgaagt
gtaGTGTCACTATAGAgatgatgcgttctttagaaaaagtaacaaaattg
ttttattactggttaacgaccaaccaaatcaaataaataagagcttgtaa
caACTCCAGCTTGTCCTATGTCTCACGTGTACGTTACTTTGTATTTAAAA
ATGTGAAGCCTCAGGCCATTTTGTCAATATAATAGTTCTTATTTATATCT
CTTTAGGAATACAAGGATTTTTCAACATGCCACACCTTCGGATCCACACT
AATCTCACTAAAGATCCCTTCACTGAAGAATTCATCAAAAATGTCACTCA
AAAACTTGCCAGTGTCATGTCACTACCTCCAGCACATGTTAGTACAACTG
TTTTTATTggtattctaaaattttcaaatttaaacttATAATATAAGTGG
ATCAGGAAGTATTCTATTGTTATAtctacagtcaactctctctagtTCGA
ACCTCTACTTTTCGaacctttctataattcgaactaaaatattgatcccc
tcagctagaaattcatataaaatactttttgtaatttgaatCCTGCTCTA
ATTCGagaagaaaaattttcttcccttatagatcgaattaaagagagagg
TCTAATAATCATAAGCGATATAAATCCACATTTTACCTTACAGGTTTATT
TATTTAACAATTTTAATTTGACGATAATTTTAATTTAGCGatagttttct
taaaatctacCTTGGGTGGGAGagtgaaagtattttttttaatcaatcgT
TTATTCTTTCCATTCTTATTTCAGCcctaaataaaccagctgcgctggaa
gctctaGCCGTAAGCTGAGAAAGATGCAAGGATTAGATAAAATAAACAGG
TCGGAAATGGAATGCAAAAAGGGGATNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNATATCGATTAGGTTTTCTCGTGACCAGC
CAATGTTTACTTCACTAACTGATTTGTACTGGCAGTTTATTAGGAAGCTA
ACTTCATTTTCATCAACTTTTCTCTCTATGATTGCTCAAGCAGGAGCGCA
CAATAAGGGAGATAAACAACACAATAAAGGAGATAATATCTCGCGCTTTC
GTTTTCTTCAGCGGATTTCCCGCTCTCCCGAACATCCGATAGAAACCGAA
TCGGGAAATACTTTTTTGGAATCTTAACGCCGTCCCCCCCAACACCCATT
TTAATGCTCACCTGCGGCTAGAGCAATTAAAGTTATATAGTCTATTTTAA
CAAATTTGCcccaattttcttgaaattttcttaattttgagcctcattat
tTCATATCCCAATGTTCTTTTTTAGGCACCTGTATTTTCATTAAGTGTTG
GCGAAACAATGTACTACATGGGCAGCTATGAACCTTCAGCATTTATCACC
TTTGCAACGCTGGGTGACTCGCCAAAAGAAGAAATGAACCAACAATGCGC
TGAAGTCATCTTCGAAGCAATGAAAGACATTGGGGTACCACAAAACAGGT
ACAcgtttgttttataagaacgtccaaaatctttgaagccttccgatgtt
cttaactttttagttTTAGCCtctaaatgttcttaaagtgtTCTCAATTa
caccattttttgaaaattttgcaattttcaaaTAAGAGTTTTTGAGGTTT
CAAAGCCTTagcttgtttttaacatttttgccatcgaagccttttgttct
tatatagtttgttcttaaaaaaagcgTATAAGGTGAAGtggattcaaaat
ttctttagaaCTCTCCTTCATGTAGGAGGTTTATTGCTACTTTCGGTTTA
ACAAATCAATGAATTTTGACCCCCCCCTCCCCACACACTCCATGGCTTTT
TgtcgaaaaagtaaaaatttttctatgcaaaattacaaaaaacaactCAA
TGCCTAAAACAGTCGTTTTCCTAATAACTGGGATACTGATCACGCATTGA
TGTGAGTAACAACTGGGACGCTAAATCAGGTAAGTTCAATATTGAAGTCA
ATACTACCGTAATAAATAATTGAATGTCTAGAAAACTTTGCAcctttgag
tttaaagcccgaagggctagagtagaatctctaacctttctcaggcaaga
aaaagtgaagccacttatttcccatcaagAATGTCcctagaacgcgccgc
aatcatgacgacggattgtatctagcggttcctttgtttttgaggactgc
ttttttttttaatctagcgATAGGTTTTACTATTActctggcgtttgtgt
aaaaaccacacGCTGGTGTTCTgtatgggaaataagtggcttcatttcca
atccaggagtctcgagtttAGCTCTTCGGACTTGGAAGTCAATGTTTTAT
ACACATTCTACTTTGAATTGACATTGACATAGAAGTTAAGGACCTTTAAT
GATTTTTCATAATCACCACTAATTGATTTTAATAGGCACCCATCACAACA
CCTTTTATCAATTCTAACTTCTGAAATCAAGGAGCTACCtcaagaaaatc
tttaaaaattctttctATAATTTTCAGTAGTAATAATAATatcagcgacc
gtagtgcagtggtggagcatccggctacggtgcgcaaggttgtgggctTA
ACCCCCAGCCGactcataccaaagatttccatacttgatgcctctctgct
tgatgctcagcaattgaGAGAGGTATCAAGGTTAAGTGgggaaatccagg
gagaaagagtgacgccctcccctaccttcgggtagatagctatcgaaaga
ggagccttcgggtcgcctccaacTGCGGTCACAGACTTACTGAATAATAG
ATAgaacttttaaagattttcttgtTTCTTACACCATTTTCAGGATTGAT
ATTGTCTTCAATGTTTATCCCAAGAGCTGTGTTGCCATGGATGGGAAACT
TTTCTCGAAATGGAAATTTGATTAGTTTTGCTTGTAATTTGTCATTTTAT
TTaggagaacattttaagaaatagAAACTGTTTAACCATTTTAATAGGAT
tttatcgaaaatttttgaaattattttctacTGCATTTAATAGATTTACC
TATACTAAACTATCTTGAGAATGTtagtttgaaaaatgtttttggctcTC
CATAGAAGGTATCTTCAGGTGATTgtcatctttttttattttgactaaGT
AGCCTCAGTTATCACAT

Coding sequence (CDS) from alignment at sc0000181:38893..44509+

>TCONS_00014102 ID=TCONS_00014102|Name=TCONS_00014102|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0000181:38893..44509+ (Clytia hemisphaerica)
ATGCCACACCTTCGGATCCACACTAATCTCACTAAAGATCCCTTCACTGA
AGAATTCATCAAAAATGTCACTCAAAAACTTGCCAGTGTCATGTCACTAC
CTCCAGCACATGCACCTGTATTTTCATTAAGTGTTGGCGAAACAATGTAC
TACATGGGCAGCTATGAACCTTCAGCATTTATCACCTTTGCAACGCTGGG
TGACTCGCCAAAAGAAGAAATGAACCAACAATGCGCTGAAGTCATCTTCG
AAGCAATGAAAGACATTGGGGTACCACAAAACAGGATTGATATTGTCTTC
AATGTTTATCCCAAGAGCTGTGTTGCCATGGATGGGAAACTTTTCTCGAA
ATGGAAATTTGATTAGATGCCACACCTTCGGATCCACACTAATCTCACTA
AAGATCCCTTCACTGAAGAATTCATCAAAAATGTCACTCAAAAACTTGCC
AGTGTCATGTCACTACCTCCAGCACATGCACCTGTATTTTCATTAAGTGT
TGGCGAAACAATGTACTACATGGGCAGCTATGAACCTTCAGCATTTATCA
CCTTTGCAACGCTGGGTGACTCGCCAAAAGAAGAAATGAACCAACAATGC
GCTGAAGTCATCTTCGAAGCAATGAAAGACATTGGGGTACCACAAAACAG
GATTGATATTGTCTTCAATGTTTATCCCAAGAGCTGTGTTGCCATGGATG
GGAAACTTTTCTCGAAATGGAAATTTGATTAGATGCCACACCTTCGGATC
CACACTAATCTCACTAAAGATCCCTTCACTGAAGAATTCATCAAAAATGT
CACTCAAAAACTTGCCAGTGTCATGTCACTACCTCCAGCACATGCACCTG
TATTTTCATTAAGTGTTGGCGAAACAATGTACTACATGGGCAGCTATGAA
CCTTCAGCATTTATCACCTTTGCAACGCTGGGTGACTCGCCAAAAGAAGA
AATGAACCAACAATGCGCTGAAGTCATCTTCGAAGCAATGAAAGACATTG
GGGTACCACAAAACAGGATTGATATTGTCTTCAATGTTTATCCCAAGAGC
TGTGTTGCCATGGATGGGAAACTTTTCTCGAAATGGAAATTTGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007899XLOC_007899Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014102-proteinTCONS_00014102-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014102-exon-sc0000181-1491911889:38893..39115TCONS_00014102-exon-sc0000181-1491911889:38893..39115Clytia hemisphaericaexon
TCONS_00014102-exon-sc0000181-1510915933:38893..39115TCONS_00014102-exon-sc0000181-1510915933:38893..39115Clytia hemisphaericaexon
TCONS_00014102-exon-sc0000181-1575043694:38893..39115TCONS_00014102-exon-sc0000181-1575043694:38893..39115Clytia hemisphaericaexon
TCONS_00014102-exon-sc0000181-1491911889:39649..39779TCONS_00014102-exon-sc0000181-1491911889:39649..39779Clytia hemisphaericaexon
TCONS_00014102-exon-sc0000181-1510915933:39649..39779TCONS_00014102-exon-sc0000181-1510915933:39649..39779Clytia hemisphaericaexon
TCONS_00014102-exon-sc0000181-1575043694:39649..39779TCONS_00014102-exon-sc0000181-1575043694:39649..39779Clytia hemisphaericaexon
TCONS_00014102-exon-sc0000181-1491911889:42668..42840TCONS_00014102-exon-sc0000181-1491911889:42668..42840Clytia hemisphaericaexon
TCONS_00014102-exon-sc0000181-1510915933:42668..42840TCONS_00014102-exon-sc0000181-1510915933:42668..42840Clytia hemisphaericaexon
TCONS_00014102-exon-sc0000181-1575043694:42668..42840TCONS_00014102-exon-sc0000181-1575043694:42668..42840Clytia hemisphaericaexon
TCONS_00014102-exon-sc0000181-1491911889:44186..44414TCONS_00014102-exon-sc0000181-1491911889:44186..44414Clytia hemisphaericaexon
TCONS_00014102-exon-sc0000181-1510915933:44186..44414TCONS_00014102-exon-sc0000181-1510915933:44186..44414Clytia hemisphaericaexon
TCONS_00014102-exon-sc0000181-1575043694:44186..44414TCONS_00014102-exon-sc0000181-1575043694:44186..44414Clytia hemisphaericaexon
TCONS_00014102-exon-sc0000181-1491911889:44451..44509TCONS_00014102-exon-sc0000181-1491911889:44451..44509Clytia hemisphaericaexon
TCONS_00014102-exon-sc0000181-1510915933:44451..44509TCONS_00014102-exon-sc0000181-1510915933:44451..44509Clytia hemisphaericaexon
TCONS_00014102-exon-sc0000181-1575043694:44451..44509TCONS_00014102-exon-sc0000181-1575043694:44451..44509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000181supercontigsc0000181:38893..44509 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.53148	1.15595	1.13575	1.37096	24.3956	16.7198	28.3007	29.3133	67.0449	46.3152	63.7551	84.0584	72.8835	68.3632	161.651	176.723	46.9779	41.7483	47.596	32.8158	17.0236	16.3587	41.463	32.7104	5.09136	4.65611	25.7685	33.3171	232.819	181.524
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001398Macrophage_inhib_fac
IPR014347Tautomerase/MIF_sf
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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