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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014097 ID=TCONS_00014097|Name=TCONS_00014097|organism=Clytia hemisphaerica|type=transcript|length=2465bp
ATGGTTAGCACAATCAGATAAGATCCATGATATAGCAaccccaaaaaaaa
attgtaatgaaattgtttcaatatgtattattttttcaatttacagGAAT
TATGTAAAATCCAAAATGGTACCAGTGCACATAGCTTATGGTGGATTAGC
ACTGTTCATCAGTCTACTAAACAATGTGTTCCTTTTATTTTATGTAACAA
CTTTCTTGACAGTCTTTGAAATTGATAGTACGTCATTTTATATTGGAGAG
ACTATATTCTTAGTTTGGAATTCAATTAATGATCCATTATTTGGATGGCT
TAGTGATCACAATGTTTTGGAAAATAAATCAGATGCTTCCAAAGATGTAA
CCACTACAACTGTATTAAAACGTATCAACATTTTATCAAAAGTCGGACCC
ATTTACTCAGcatgttttcttttattttggtttCGATTTTTACCGGTTTG
GATTCAATTTTCAGTGGCACTTTGTCTTTATGACAGTTTTTTAACACTGG
TAGATTTACATCACCAAGCATTATTAGCAGATCTAGCAATTGAAGCAAAA
GATCGTGTCAAATTGAATAGTTATTGTTCAATGTTTAGTGCAATTGGCTC
GGTGTCTGTATTCTTATCCTTTTCATTATGGAGAAAAGACAATTTGTTCC
CGTTTCAACTATTTTGTGTTGCATTGGCATTGGTTGTTGCCGTGGGATTT
CATGTTTGCTGTAAATCTATGAAACAATATTATTTAACAACATCTATAAA
AAAGCGAGATGATGCTCAACCAGTTAGCAAGCAATATAAAACTAGTTTTA
CAGCTATGAAAAAGTACACATGCCAACTATACAGGCATCATAATTTCCTG
GTATTCTCAGTTATGAACTTTTTACAAGTGTTCCATTGTCATTTTAACAG
CAATTTCTTccctttatttatacaaaatttatTGGGACATAAAATTAGCC
AAAAAGGTGGTGCTGCCCTCCTTGGCTTATCATTCTTAGTACCACACATT
AACAATCTTTATTTCCTTCAACTATGCAAACGCTATGGAGTATATTTTAT
CATCAAAGTTTTATTTATGGTGAAAGTAAGTCTTGCCCTTTGTATGTGGC
ATCTTGGCGTATCGCATTGGTATCTCTTATGTCTTTTCATAATGAGTAAC
CGTATATTTACTGAAGGAACTTGTAAATTGTTAAATTTGGTCATCTCAGA
CCTAGTGGATGAGGATTATGTGAAATTTAAAAGGAGTTCGCCAGTATCAG
CTTTGGTATTTGGTACCGCAGCTTTCTTATCAAAACCCGGCCAAACACTG
GCACCAGTTTTAGGTTCATACTTATTATATGCTCAAACGGGGAAATCACT
TTTCTTAAAACAATCTGAACCTGATGCCGTTTATGAAGAGTCAAGTGATT
tttcaaatggttgttttttcgTTATGGTCATGGTATCGATTATTTGTGGT
TTGCTGCAGTTACTggtttggaaatttttctcattGAAAGAGAAGTAttt
acagcaagtgaaaaatgATCGATATTATATGGAGAAAGGTTACCATAGTA
ATGTCATATAAAATGATCATGGTACACATATTATTTCTAGACTATGTAgc
attttttagcattcaatTATGATATTTTAAACAGTTTTAACTAAACTTTC
TAATGAATTTTGTCTGtttttgctacatttttggtacaaCCAACAGGGAA
GTTTAAAATTCTATTGACTTGGACATTCATGTCAAATGAAgggatttttt
gtattttataaaaCTAAAAAGGGTGACTTTATCGCTTTGGGTATTCTGAG
GGCTGGTCTTTCAGGTATGTTTCACAATTATTTGTTGATAAAATTATTGA
TAGagttatttttattgtttttagagATTGTTCTAAATTTAaacctttat
tttttttatttctagctaaacatttttatttaacaTTAACGCAGTAGCAG
CGTGAAGACAGAGGAGTAACTTCCCTCTTATGCGGCCAAGTTTTTGATGA
CGGGCAAAAAACTTTGGGCACCCAAAGCGCCTCTAATCGCTAATTCAGGG
GTCCCTTTGCTATTTATTGCCCTAAAGTTAGTTATCTTTACCCAAGAAGA
GGAATGTTATCTAAAAATTTTCTGTTCGCCTCAATCGCGTAACctttcaa
aacatatatttcacaaaaattggAGGGGTGCTCTCAAAATACCTATTTCG
GAAAATTGCTTCCCCCATTTatcccaaattttggttgatCCACCATATGT
TATTGCAAAAGTTTCAATTATTTCTACAATGGCTGTAATTCGCAAAGACG
TTTCTCTTTTCTTACACTCAAGCTGACTcaagttaaaaaaatcattttga
taACAATATTCTTGGACACATATTAACCAGCTGTAGATTTGATCCAATca
gctttttgaattttatttttgttaaatagaaattttcgaaaattgcaTAT
TGTTTAAAACTAAGG Run BLAST on NCBI protein sequence of TCONS_00014097-protein >TCONS_00014097-protein ID=TCONS_00014097-protein|Name=TCONS_00014097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
WLAQSDKIHDIATPKKNCNEIVSICIIFSIYRNYVKSKMVPVHIAYGGLA
LFISLLNNVFLLFYVTTFLTVFEIDSTSFYIGETIFLVWNSINDPLFGWL
SDHNVLENKSDASKDVTTTTVLKRINILSKVGPIYSACFLLFWFRFLPVW
IQFSVALCLYDSFLTLVDLHHQALLADLAIEAKDRVKLNSYCSMFSAIGS
VSVFLSFSLWRKDNLFPFQLFCVALALVVAVGFHVCCKSMKQYYLTTSIK
KRDDAQPVSKQYKTSFTAMKKYTCQLYRHHNFLVFSVMNFLQVFHCHFNS
NFFPLFIQNLLGHKISQKGGAALLGLSFLVPHINNLYFLQLCKRYGVYFI
IKVLFMVKVSLALCMWHLGVSHWYLLCLFIMSNRIFTEGTCKLLNLVISD
LVDEDYVKFKRSSPVSALVFGTAAFLSKPGQTLAPVLGSYLLYAQTGKSL
FLKQSEPDAVYEESSDFSNGCFFVMVMVSIICGLLQLLVWKFFSLKEKYL
QQVKNDRYYMEKGYHSNVI Run BLAST on NCBI transcript from alignment at sc0000181:24969..27504+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014097 ID=TCONS_00014097|Name=TCONS_00014097|organism=Clytia hemisphaerica|type=transcript|length=2536bp|location=Sequence derived from alignment at sc0000181:24969..27504+ (Clytia hemisphaerica)
ATGGTTAGCACAATCAGATAAGATCCATGATATAGCAaccccaaaaaaaa
attgtaatgaaattgtttcaatatgtattattttttcaatttacagGAAT
TATGTAAAATCCAAAATGGTACCAGTGCACATAGCTTATGGTGGATTAGC
ACTGTTCATCAGTCTACTAAACAATGTGTTCCTTTTATTTTATGTAACAA
CTTTCTTGACAGTCTTTGAAATTGATAGTACGTCATTTTATATTGGAGAG
ACTATATTCTTAGTTTGGAATTCAATTAATGATCCATTATTTGGATGGCT
TAGTGATCACAATGTTTTGGAAAATAAATCAGATGCTTCCAAAGATGTAA
CCACTACAACTGTATTAAAACGTATCAACATTTTATCAAAAGTCGGACCC
ATTTACTCAGcatgttttcttttattttggtttCGATTTTTACCGGTTTG
GATTCAATTTTCAGTGGCACTTTGTCTTTATGACAGTTTTTTAACACTGG
TAGATTTACATCACCAAGCATTATTAGCAGATCTAGCAATTGAAGCAAAA
GATCGTGTCAAATTGAATAGTTATTGTTCAATGTTTAGTGCAATTGGCTC
GGTGTCTGTATTCTTATCCTTTTCATTATGGAGAAAAGACAATTTGTTCC
CGTTTCAACTATTTTGTGTTGCATTGGCATTGGTTGTTGCCGTGGGATTT
CATGTTTGCTGTAAATCTATGAAACAATATTATTTAACAACATCTATAAA
AAAGCGAGATGATGCTCAACCAGTTAGCAAGCAATATAAAACTAGTTTTA
CAGCTATGAAAAAGTACACATGCCAACTATACAGGCATCATAATTTCCTG
GTATTCTCAGTTATGAACTTTTTACAAGTGTTCCATTGTCATTTTAACAG
CAATTTCTTccctttatttatacaaaatttatTGGGACATAAAATTAGCC
AAAAAGGTGGTGCTGCTCTCCTTGGCTTATCATTCTTAGTACCACACATT
AACAATCTTTATTTCCTTCAACNGAAGGTGGTGCTGCCCTCCTTGGCTTA
TCATTCTTAGTACCACACATTAACAATCTTTATTTCCTTCAACTATGCAA
ACGCTATGGAGTATATTTTATCATCAAAGTTTTATTTATGGTGAAAGTAA
GTCTTGCCCTTTGTATGTGGCATCTTGGCGTATCGCATTGGTATCTCTTA
TGTCTTTTCATAATGAGTAACCGTATATTTACTGAAGGAACTTGTAAATT
GTTAAATTTGGTCATCTCAGACCTAGTGGATGAGGATTATGTGAAATTTA
AAAGGAGTTCGCCAGTATCAGCTTTGGTATTTGGTACCGCAGCTTTCTTA
TCAAAACCCGGCCAAACACTGGCACCAGTTTTAGGTTCATACTTATTATA
TGCTCAAACGGGGAAATCACTTTTCTTAAAACAATCTGAACCTGATGCCG
TTTATGAAGAGTCAAGTGATTtttcaaatggttgttttttcgTTATGGTC
ATGGTATCGATTATTTGTGGTTTGCTGCAGTTACTggtttggaaattttt
ctcattGAAAGAGAAGTAtttacagcaagtgaaaaatgATCGATATTATA
TGGAGAAAGGTTACCATAGTAATGTCATATAAAATGATCATGGTACACAT
ATTATTTCTAGACTATGTAgcattttttagcattcaatTATGATATTTTA
AACAGTTTTAACTAAACTTTCTAATGAATTTTGTCTGtttttgctacatt
tttggtacaaCCAACAGGGAAGTTTAAAATTCTATTGACTTGGACATTCA
TGTCAAATGAAgggattttttgtattttataaaaCTAAAAAGGGTGACTT
TATCGCTTTGGGTATTCTGAGGGCTGGTCTTTCAGGTATGTTTCACAATT
ATTTGTTGATAAAATTATTGATAGagttatttttattgtttttagagATT
GTTCTAAATTTAaacctttattttttttatttctagctaaacatttttat
ttaacaTTAACGCAGTAGCAGCGTGAAGACAGAGGAGTAACTTCCCTCTT
ATGCGGCCAAGTTTTTGATGACGGGCAAAAAACTTTGGGCACCCAAAGCG
CCTCTAATCGCTAATTCAGGGGTCCCTTTGCTATTTATTGCCCTAAAGTT
AGTTATCTTTACCCAAGAAGAGGAATGTTATCTAAAAATTTTCTGTTCGC
CTCAATCGCGTAACctttcaaaacatatatttcacaaaaattggAGGGGT
GCTCTCAAAATACCTATTTCGGAAAATTGCTTCCCCCATTTatcccaaat
tttggttgatCCACCATATGTTATTGCAAAAGTTTCAATTATTTCTACAA
TGGCTGTAATTCGCAAAGACGTTTCTCTTTTCTTACACTCAAGCTGACTc
aagttaaaaaaatcattttgataACAATATTCTTGGACACATATTAACCA
GCTGTAGATTTGATCCAATcagctttttgaattttatttttgttaaatag
aaattttcgaaaattgcaTATTGTTTAAAACTAAGG Coding sequence (CDS) from alignment at sc0000181:24969..27504+ >TCONS_00014097 ID=TCONS_00014097|Name=TCONS_00014097|organism=Clytia hemisphaerica|type=CDS|length=3120bp|location=Sequence derived from alignment at sc0000181:24969..27504+ (Clytia hemisphaerica)
TGGTTAGCACAATCAGATAAGATCCATGATATAGCAaccccaaaaaaaaa
ttgtaatgaaattgtttcaatatgtattattttttcaatttacagGAATT
ATGTAAAATCCAAAATGGTACCAGTGCACATAGCTTATGGTGGATTAGCA
CTGTTCATCAGTCTACTAAACAATGTGTTCCTTTTATTTTATGTAACAAC
TTTCTTGACAGTCTTTGAAATTGATAGTACGTCATTTTATATTGGAGAGA
CTATATTCTTAGTTTGGAATTCAATTAATGATCCATTATTTGGATGGCTT
AGTGATCACAATGTTTTGGAAAATAAATCAGATGCTTCCAAAGATGTAAC
CACTACAACTGTATTAAAACGTATCAACATTTTATCAAAAGTCGGACCCA
TTTACTCAGcatgttttcttttattttggtttCGATTTTTACCGGTTTGG
ATTCAATTTTCAGTGGCACTTTGTCTTTATGACAGTTTTTTAACACTGGT
AGATTTACATCACCAAGCATTATTAGCAGATCTAGCAATTGAAGCAAAAG
ATCGTGTCAAATTGAATAGTTATTGTTCAATGTTTAGTGCAATTGGCTCG
GTGTCTGTATTCTTATCCTTTTCATTATGGAGAAAAGACAATTTGTTCCC
GTTTCAACTATTTTGTGTTGCATTGGCATTGGTTGTTGCCGTGGGATTTC
ATGTTTGCTGTAAATCTATGAAACAATATTATTTAACAACATCTATAAAA
AAGCGAGATGATGCTCAACCAGTTAGCAAGCAATATAAAACTAGTTTTAC
AGCTATGAAAAAGTACACATGCCAACTATACAGGCATCATAATTTCCTGG
TATTCTCAGTTATGAACTTTTTACAAGTGTTCCATTGTCATTTTAACAGC
AATTTCTTccctttatttatacaaaatttatTGGGACATAAAATTAGCCA
AAAAGGTGGTGCTGCCCTCCTTGGCTTATCATTCTTAGTACCACACATTA
ACAATCTTTATTTCCTTCAACTATGCAAACGCTATGGAGTATATTTTATC
ATCAAAGTTTTATTTATGGTGAAAGTAAGTCTTGCCCTTTGTATGTGGCA
TCTTGGCGTATCGCATTGGTATCTCTTATGTCTTTTCATAATGAGTAACC
GTATATTTACTGAAGGAACTTGTAAATTGTTAAATTTGGTCATCTCAGAC
CTAGTGGATGAGGATTATGTGAAATTTAAAAGGAGTTCGCCAGTATCAGC
TTTGGTATTTGGTACCGCAGCTTTCTTATCAAAACCCGGCCAAACACTGG
CACCAGTTTTAGGTTCATACTTATTATATGCTCAAACGGGGAAATCACTT
TTCTTAAAACAATCTGAACCTGATGCCGTTTATGAAGAGTCAAGTGATTt
ttcaaatggttgttttttcgTTATGGTCATGGTATCGATTATTTGTGGTT
TGCTGCAGTTACTggtttggaaatttttctcattGAAAGAGAAGTAttta
cagcaagtgaaaaatgATCGATATTATATGGAGAAAGGTTACCATAGTAA
TGTCATATAATGGTTAGCACAATCAGATAAGATCCATGATATAGCAaccc
caaaaaaaaattgtaatgaaattgtttcaatatgtattattttttcaatt
tacagGAATTATGTAAAATCCAAAATGGTACCAGTGCACATAGCTTATGG
TGGATTAGCACTGTTCATCAGTCTACTAAACAATGTGTTCCTTTTATTTT
ATGTAACAACTTTCTTGACAGTCTTTGAAATTGATAGTACGTCATTTTAT
ATTGGAGAGACTATATTCTTAGTTTGGAATTCAATTAATGATCCATTATT
TGGATGGCTTAGTGATCACAATGTTTTGGAAAATAAATCAGATGCTTCCA
AAGATGTAACCACTACAACTGTATTAAAACGTATCAACATTTTATCAAAA
GTCGGACCCATTTACTCAGcatgttttcttttattttggtttCGATTTTT
ACCGGTTTGGATTCAATTTTCAGTGGCACTTTGTCTTTATGACAGTTTTT
TAACACTGGTAGATTTACATCACCAAGCATTATTAGCAGATCTAGCAATT
GAAGCAAAAGATCGTGTCAAATTGAATAGTTATTGTTCAATGTTTAGTGC
AATTGGCTCGGTGTCTGTATTCTTATCCTTTTCATTATGGAGAAAAGACA
ATTTGTTCCCGTTTCAACTATTTTGTGTTGCATTGGCATTGGTTGTTGCC
GTGGGATTTCATGTTTGCTGTAAATCTATGAAACAATATTATTTAACAAC
ATCTATAAAAAAGCGAGATGATGCTCAACCAGTTAGCAAGCAATATAAAA
CTAGTTTTACAGCTATGAAAAAGTACACATGCCAACTATACAGGCATCAT
AATTTCCTGGTATTCTCAGTTATGAACTTTTTACAAGTGTTCCATTGTCA
TTTTAACAGCAATTTCTTccctttatttatacaaaatttatTGGGACATA
AAATTAGCCAAAAAGGTGGTGCTGCCCTCCTTGGCTTATCATTCTTAGTA
CCACACATTAACAATCTTTATTTCCTTCAACTATGCAAACGCTATGGAGT
ATATTTTATCATCAAAGTTTTATTTATGGTGAAAGTAAGTCTTGCCCTTT
GTATGTGGCATCTTGGCGTATCGCATTGGTATCTCTTATGTCTTTTCATA
ATGAGTAACCGTATATTTACTGAAGGAACTTGTAAATTGTTAAATTTGGT
CATCTCAGACCTAGTGGATGAGGATTATGTGAAATTTAAAAGGAGTTCGC
CAGTATCAGCTTTGGTATTTGGTACCGCAGCTTTCTTATCAAAACCCGGC
CAAACACTGGCACCAGTTTTAGGTTCATACTTATTATATGCTCAAACGGG
GAAATCACTTTTCTTAAAACAATCTGAACCTGATGCCGTTTATGAAGAGT
CAAGTGATTtttcaaatggttgttttttcgTTATGGTCATGGTATCGATT
ATTTGTGGTTTGCTGCAGTTACTggtttggaaatttttctcattGAAAGA
GAAGTAtttacagcaagtgaaaaatgATCGATATTATATGGAGAAAGGTT
ACCATAGTAATGTCATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014097-exon-sc0000181-1491911889:24969..25924 | TCONS_00014097-exon-sc0000181-1491911889:24969..25924 | Clytia hemisphaerica | exon |
| TCONS_00014097-exon-sc0000181-1510915933:24969..25924 | TCONS_00014097-exon-sc0000181-1510915933:24969..25924 | Clytia hemisphaerica | exon |
| TCONS_00014097-exon-sc0000181-1575043694:24969..25924 | TCONS_00014097-exon-sc0000181-1575043694:24969..25924 | Clytia hemisphaerica | exon |
| TCONS_00014097-exon-sc0000181-1491911889:25996..27504 | TCONS_00014097-exon-sc0000181-1491911889:25996..27504 | Clytia hemisphaerica | exon |
| TCONS_00014097-exon-sc0000181-1510915933:25996..27504 | TCONS_00014097-exon-sc0000181-1510915933:25996..27504 | Clytia hemisphaerica | exon |
| TCONS_00014097-exon-sc0000181-1575043694:25996..27504 | TCONS_00014097-exon-sc0000181-1575043694:25996..27504 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000181 | supercontig | sc0000181:24969..27504 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
BLAST of TCONS_00014097 vs. Swiss-Prot (Human)
Match: MF13A (Transmembrane protein 180 OS=Homo sapiens GN=MFSD13A PE=2 SV=1) HSP 1 Score: 384.8 bits (987), Expect = 2.741e-123 Identity = 232/507 (45.76%), Postives = 320/507 (63.12%), Query Frame = 2
Query: 119 VPVHIAYGGLALFISLLNNVFLLFYVTTFLTVFEIDSTSFYIGETIFLVWNSINDPLFGWLSDHNVLENKSDASKDVTT-TTVLKRINILSKVGPIYSACFLLFWFRFLPVWIQFSVALCLYDSFLTXXXXXXXXXXXXXXIEAKDRVKLNSYCSMFSAIGSVSVFLSFSLWRKDNLFPFQLFCXXXXXXXXXGFHVCCKSMKQYYLTTSIKKRD--------------DAQPVSKQYKTSFTAMKKYTCQLYRHHNFLVFSVMNFLQVFHCHFNSNFFPLFIQNLLGHKISQKGGAALLGLSFLVPHINNLYFLQLCKRYGVYFIIKVLFMVKVSLALCMWHLGVSHWYLLCLFIMSNRIFTEGTCKLLNLVISDLVDEDYVKFKRSSPVSALVFGTAAFLSKPGQTLAPVLGSYLLYAQTGKSLFLKQSEPDAV-------------YEESSDFSNGCFFVMVMVSIICGLLQLLVWKFFSLKEKYLQQVKNDRYYMEKGYHSNV 1555
+P + YG LALF ++L+NVFLL+YV TF++V++I+ +F++GET+FL+WNS+NDPLFGWLSD L ++ + +++ VL R+ L GP+ + FL FW + P +QF + LCLYD FLTLVDLHH ALLADLA+ A DR LN YCS+FSA GS+SVF S++ W K++ F+ FCV LA+ +GF + +++ ++D + V + S T + +Y QL RH NFL F M+ +QVFHCHFNSNFFPLF+++LL IS G+ LLGLS++ PH+NNLYFL LC+R+GVY +++ LF++K+ L+L M G H LLCLFI SNR+FTEGTCKLL LV++DLVDED V R SAL+FG A ++KPGQT AP+LG++LL TG LF +QS V ++ GCF+++V+V I C LLQL W F+L + L VK R + + +V
Sbjct: 13 LPTAVVYGSLALFTTILHNVFLLYYVDTFVSVYKINKMAFWVGETVFLLWNSLNDPLFGWLSDRQFLSSQPRSGAGLSSRAVVLARVQALGWHGPLLALSFLAFWVPWAPAGLQFLLCLCLYDGFLTLVDLHHHALLADLALSAHDRTHLNFYCSLFSAAGSLSVFASYAFWNKEDFSSFRAFCVTLAVSSGLGFLGATQLLRR---RVEAARKDPGCSGLVVDSGLCGEELLVGSEEADSIT-LGRYLRQLARHRNFLWFVSMDLVQVFHCHFNSNFFPLFLEHLLSDHISLSTGSILLGLSYVAPHLNNLYFLSLCRRWGVYAVVRGLFLLKLGLSLLMLLAGPDHLSLLCLFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPLLGTWLLCFYTGHDLF-QQSLITPVGSAHPWPEPPAPAPAQAPTLRQGCFYLLVLVPITCALLQLFTWSQFTLHGRRLHMVKAQRQNLSQAQTLDV 514
The following BLAST results are available for this feature:
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