TCONS_00014094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014094
Unique NameTCONS_00014094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014094 ID=TCONS_00014094|Name=TCONS_00014094|organism=Clytia hemisphaerica|type=transcript|length=324bp
GAGGCATATCATGAATCATCTACAAGATCAAAAACTATTGTCAAATAAAC
AATACGGCTTCATCAGTAACCGATCAACAGTTACTCAACTCCTGAACTAC
TTGGATAAGTGCTGCGAAAGCATTGCTAATGGTAAAGTAGTTGATACGat
atatttcgattttgctaAAGCCTTCGATACTGTTCCCTACCGTCGCTTAC
TGAAGAAACTTGAAGGATATGGAATATCAAGTAACTGTCTACGATGGATA
GAGTCTTTCTTGACAGACAGAAAGCAACTCGTAAAGGTTGATCAAGGTCG
ATCAAGTACAAACTCCGTTGTAAG
Run BLAST on NCBI

protein sequence of TCONS_00014094-protein

>TCONS_00014094-protein ID=TCONS_00014094-protein|Name=TCONS_00014094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
RHIMNHLQDQKLLSNKQYGFISNRSTVTQLLNYLDKCCESIANGKVVDTI
YFDFAKAFDTVPYRRLLKKLEGYGISSNCLRWIESFLTDRKQLVKVDQGR
SSTNSVV
Run BLAST on NCBI

transcript from alignment at sc0000180:484183..484506

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014094 ID=TCONS_00014094|Name=TCONS_00014094|organism=Clytia hemisphaerica|type=transcript|length=324bp|location=Sequence derived from alignment at sc0000180:484183..484506 (Clytia hemisphaerica)
CTTACAACGGAGTTTGTACTTGATCGACCTTGATCAACCTTTACGAGTTG
CTTTCTGTCTGTCAAGAAAGACTCTATCCATCGTAGACAGTTACTTGATA
TTCCATATCCTTCAAGTTTCTTCAGTAAGCGACGGTAGGGAACAGTATCG
AAGGCTTtagcaaaatcgaaatatatCGTATCAACTACTTTACCATTAGC
AATGCTTTCGCAGCACTTATCCAAGTAGTTCAGGAGTTGAGTAACTGTTG
ATCGGTTACTGATGAAGCCGTATTGTTTATTTGACAATAGTTTTTGATCT
TGTAGATGATTCATGATATGCCTC

Coding sequence (CDS) from alignment at sc0000180:484183..484506

>TCONS_00014094 ID=TCONS_00014094|Name=TCONS_00014094|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000180:484183..484506 (Clytia hemisphaerica)
TACAACGGAGTTTGTACTTGATCGACCTTGATCAACCTTTACGAGTTGCT
TTCTGTCTGTCAAGAAAGACTCTATCCATCGTAGACAGTTACTTGATATT
CCATATCCTTCAAGTTTCTTCAGTAAGCGACGGTAGGGAACAGTATCGAA
GGCTTtagcaaaatcgaaatatatCGTATCAACTACTTTACCATTAGCAA
TGCTTTCGCAGCACTTATCCAAGTAGTTCAGGAGTTGAGTAACTGTTGAT
CGGTTACTGATGAAGCCGTATTGTTTATTTGACAATAGTTTTTGATCTTG
TAGATGATTCATGATATGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007894XLOC_007894Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014094-proteinTCONS_00014094-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014094-exon-sc0000180-1491911889:484183..484506TCONS_00014094-exon-sc0000180-1491911889:484183..484506Clytia hemisphaericaexon
TCONS_00014094-exon-sc0000180-1510915933:484183..484506TCONS_00014094-exon-sc0000180-1510915933:484183..484506Clytia hemisphaericaexon
TCONS_00014094-exon-sc0000180-1575043694:484183..484506TCONS_00014094-exon-sc0000180-1575043694:484183..484506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000180supercontigsc0000180:484183..484506 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.30848	0.601633	2.44494	0	0.832005	1.31492	0.7932	0.742584	1.0398	0.32199	2.70935	0.951572	1.84644	2.76979	0.700661	0.563937	0.231575	0.949427	0.655842	2.74517	1.19302	2.18218	0.707394	0.643124	2.12374	5.32061	0	0	0	1.04652
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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