|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014089 ID=TCONS_00014089|Name=TCONS_00014089|organism=Clytia hemisphaerica|type=transcript|length=1437bp
gattttggtATTGGAAGATAATTTTAGATTTCCGAAATCCCTTTATGATA
TAATCAGCAACTCCCCTGTTAACAGCtcactgtttctttattttcagcAT
CATATTCTGAGGACACTTATTTTGCTGACATAAGCACACCATAGAGAGCT
GGATATGGCTTACAAATGGGTTTCATTTGCACACAGTTTCCAAAATCTTG
AACTGACCAATCAAATCGTCATCATTTTATTAACCATTGTTTTCTTCCTT
GGAATTATTGGAAATGCtgttgttttgtttacattctTGAAGAAAAGACA
CCGAACagtttttgaaaagagattagTGCTCCTAGCTATAGTAGATTTGG
TATCTTCGCTATGTGTTCCCTCTTTATTCATTTATGGCACCTTAACACAT
TTCCATGCACCGCATTTGACAGAACCAGTCTGTAAAATATGGCTTAGTCT
ATTCCCAATGTCGGTCACAATATCGCAAGCTTTACTCGTTTTTATATCTT
TCGAGAGATATCATCGTATACAAAAACCTTTCCAGCGACCATATCAAATC
AAATATGTGTTTCTGCCAATTCTGGTAATATCAGTAGCCCTTGTATCTCC
TTACACGTATACATTAAAGGACTTTTGCCGTACACAAGACATGACTTATC
ACAAGATATATGTTATTTTAAACGTGGCTAGAGATATAATTTCAGTTTTG
GCAATGCTGTATTTTAACTACAGAACTGGAAACTGTTTAAATCAAAACCA
AGATAGTATTTGTGTATCAAATCATTCGAACCTTAAATCAAAACGTATCT
TTCGAACGCTGCTCAAGATGGTGGTGGTATTCACAATTTTGGTGACTCCA
GTAGACTTCTACCAGTTTAgtgttttgaatttaatgtcTTCATTTCCCCC
GTATCTGAATCAAGTTAATACGATGTTGGTTGTATTACAAATGTTTAACT
CTGTTgctaatattttgatttattcAATCAGTGACCAAAATTTCCGCTTG
AAATTCTTACAGTCCGTTAAAATGACTTTTAAGCGAAATGTTAAATCTGG
TGATTTGAGAGAGGAGATGAACAATAAAATATCTGCAACAAATGAATCCA
ATTCGACGACCACAAACATATGGCTATAGAacaaaaatttgtaaaacaaa
tataccaggtgtcccaaaaaaaaagtCCCCTTGTTTGAAGTgtattttct
cgagttctatgagCTGTTCAAGAATCAATCCATTTGAATTGAAAAGAGGA
AGgataaattttgaggggtcgtTTGTTATATTTGGTCAACTAGATGAAAA
GCTGTGGcctattttttttctggaagttgggtaccacttttcaaaaaact
ccgatcaaagattttgcttggccgggattgagtaacttggtccagggata
tataaaggtcagtggttcgGTTAATGTAATCTAAAAT Run BLAST on NCBI protein sequence of TCONS_00014089-protein >TCONS_00014089-protein ID=TCONS_00014089-protein|Name=TCONS_00014089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
MAYKWVSFAHSFQNLELTNQIVIILLTIVFFLGIIGNAVVLFTFLKKRHR
TVFEKRLVLLAIVDLVSSLCVPSLFIYGTLTHFHAPHLTEPVCKIWLSLF
PMSVTISQALLVFISFERYHRIQKPFQRPYQIKYVFLPILVISVALVSPY
TYTLKDFCRTQDMTYHKIYVILNVARDIISVLAMLYFNYRTGNCLNQNQD
SICVSNHSNLKSKRIFRTLLKMVVVFTILVTPVDFYQFSVLNLMSSFPPY
LNQVNTMLVVLQMFNSVANILIYSISDQNFRLKFLQSVKMTFKRNVKSGD
LREEMNNKISATNESNSTTTNIWL Run BLAST on NCBI transcript from alignment at sc0000180:448247..449683 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014089 ID=TCONS_00014089|Name=TCONS_00014089|organism=Clytia hemisphaerica|type=transcript|length=1437bp|location=Sequence derived from alignment at sc0000180:448247..449683 (Clytia hemisphaerica)
ATTTTAGATTACATTAACcgaaccactgacctttatatatccctggacca
agttactcaatcccggccaagcaaaatctttgatcggagttttttgaaaa
gtggtacccaacttccagaaaaaaaataggCCACAGCTTTTCATCTAGTT
GACCAAATATAACAAacgacccctcaaaatttatcCTTCCTCTTTTCAAT
TCAAATGGATTGATTCTTGAACAGctcatagaactcgagaaaatacACTT
CAAACAAGGGGactttttttttgggacacctggtatatttgttttacaaa
tttttgtTCTATAGCCATATGTTTGTGGTCGTCGAATTGGATTCATTTGT
TGCAGATATTTTATTGTTCATCTCCTCTCTCAAATCACCAGATTTAACAT
TTCGCTTAAAAGTCATTTTAACGGACTGTAAGAATTTCAAGCGGAAATTT
TGGTCACTGATTgaataaatcaaaatattagcAACAGAGTTAAACATTTG
TAATACAACCAACATCGTATTAACTTGATTCAGATACGGGGGAAATGAAg
acattaaattcaaaacacTAAACTGGTAGAAGTCTACTGGAGTCACCAAA
ATTGTGAATACCACCACCATCTTGAGCAGCGTTCGAAAGATACGTTTTGA
TTTAAGGTTCGAATGATTTGATACACAAATACTATCTTGGTTTTGATTTA
AACAGTTTCCAGTTCTGTAGTTAAAATACAGCATTGCCAAAACTGAAATT
ATATCTCTAGCCACGTTTAAAATAACATATATCTTGTGATAAGTCATGTC
TTGTGTACGGCAAAAGTCCTTTAATGTATACGTGTAAGGAGATACAAGGG
CTACTGATATTACCAGAATTGGCAGAAACACATATTTGATTTGATATGGT
CGCTGGAAAGGTTTTTGTATACGATGATATCTCTCGAAAGATATAAAAAC
GAGTAAAGCTTGCGATATTGTGACCGACATTGGGAATAGACTAAGCCATA
TTTTACAGACTGGTTCTGTCAAATGCGGTGCATGGAAATGTGTTAAGGTG
CCATAAATGAATAAAGAGGGAACACATAGCGAAGATACCAAATCTACTAT
AGCTAGGAGCActaatctcttttcaaaaactGTTCGGTGTCTTTTCTTCA
agaatgtaaacaaaacaacaGCATTTCCAATAATTCCAAGGAAGAAAACA
ATGGTTAATAAAATGATGACGATTTGATTGGTCAGTTCAAGATTTTGGAA
ACTGTGTGCAAATGAAACCCATTTGTAAGCCATATCCAGCTCTCTATGGT
GTGCTTATGTCAGCAAAATAAGTGTCCTCAGAATATGATgctgaaaataa
agaaacagtgaGCTGTTAACAGGGGAGTTGCTGATTATATCATAAAGGGA
TTTCGGAAATCTAAAATTATCTTCCAATaccaaaatc Coding sequence (CDS) from alignment at sc0000180:448247..449683 >TCONS_00014089 ID=TCONS_00014089|Name=TCONS_00014089|organism=Clytia hemisphaerica|type=CDS|length=975bp|location=Sequence derived from alignment at sc0000180:448247..449683 (Clytia hemisphaerica)
CTATAGCCATATGTTTGTGGTCGTCGAATTGGATTCATTTGTTGCAGATA
TTTTATTGTTCATCTCCTCTCTCAAATCACCAGATTTAACATTTCGCTTA
AAAGTCATTTTAACGGACTGTAAGAATTTCAAGCGGAAATTTTGGTCACT
GATTgaataaatcaaaatattagcAACAGAGTTAAACATTTGTAATACAA
CCAACATCGTATTAACTTGATTCAGATACGGGGGAAATGAAgacattaaa
ttcaaaacacTAAACTGGTAGAAGTCTACTGGAGTCACCAAAATTGTGAA
TACCACCACCATCTTGAGCAGCGTTCGAAAGATACGTTTTGATTTAAGGT
TCGAATGATTTGATACACAAATACTATCTTGGTTTTGATTTAAACAGTTT
CCAGTTCTGTAGTTAAAATACAGCATTGCCAAAACTGAAATTATATCTCT
AGCCACGTTTAAAATAACATATATCTTGTGATAAGTCATGTCTTGTGTAC
GGCAAAAGTCCTTTAATGTATACGTGTAAGGAGATACAAGGGCTACTGAT
ATTACCAGAATTGGCAGAAACACATATTTGATTTGATATGGTCGCTGGAA
AGGTTTTTGTATACGATGATATCTCTCGAAAGATATAAAAACGAGTAAAG
CTTGCGATATTGTGACCGACATTGGGAATAGACTAAGCCATATTTTACAG
ACTGGTTCTGTCAAATGCGGTGCATGGAAATGTGTTAAGGTGCCATAAAT
GAATAAAGAGGGAACACATAGCGAAGATACCAAATCTACTATAGCTAGGA
GCActaatctcttttcaaaaactGTTCGGTGTCTTTTCTTCAagaatgta
aacaaaacaacaGCATTTCCAATAATTCCAAGGAAGAAAACAATGGTTAA
TAAAATGATGACGATTTGATTGGTCAGTTCAAGATTTTGGAAACTGTGTG
CAAATGAAACCCATTTGTAAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014089-exon-sc0000180-1491911889:448247..449683 | TCONS_00014089-exon-sc0000180-1491911889:448247..449683 | Clytia hemisphaerica | exon |
| TCONS_00014089-exon-sc0000180-1510915933:448247..449683 | TCONS_00014089-exon-sc0000180-1510915933:448247..449683 | Clytia hemisphaerica | exon |
| TCONS_00014089-exon-sc0000180-1575043694:448247..449683 | TCONS_00014089-exon-sc0000180-1575043694:448247..449683 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000180 | supercontig | sc0000180:448247..449683 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
