TCONS_00014083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014083
Unique NameTCONS_00014083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014083 ID=TCONS_00014083|Name=TCONS_00014083|organism=Clytia hemisphaerica|type=transcript|length=469bp
CCAAAGTATCTGAAATCTTCGACCCAACTGGAAAGATGACTCCAATCACT
GCTGGTCTCAAACTAGATCTGCATGAACTAGTCAATCACAAACTTCAATG
GGATGACGTCCTTCCAGGCTCACTTCGCTCACTATGGACATCCCACTTCG
ACATGATCCAAGAAATCAAGGACATCAAATTTCACCGCACAATCATTCCT
GAAGATGCACTCAATCTCGACATCACAACCCTCGACTTCANTCCATCTCA
ACACCCTGTCGAGTAGTGTTTGACGCCTCCCAGCCTACTAGCAGTGGATA
TAGCCTCAACAACATCTGTGCCAAGGGTCGCAAACAACATGAATAAGATG
ATCGAAATCCTCATCCGTTGGAGTATCAGACGCATTGGTTATCATACAGA
TGTAAGTAAAATGTATAATATGGTTAAATTGAACGAAGACCATTGGTGCC
TCCAGAGGTATTTGTGGTC
Run BLAST on NCBI

transcript from alignment at sc0000180:211637..212105

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014083 ID=TCONS_00014083|Name=TCONS_00014083|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at sc0000180:211637..212105 (Clytia hemisphaerica)
GACCACAAATACCTCTGGAGGCACCAATGGTCTTCGTTCAATTTAACCAT
ATTATACATTTTACTTACATCTGTATGATAACCAATGCGTCTGATACTCC
AACGGATGAGGATTTCGATCATCTTATTCATGTTGTTTGCGACCCTTGGC
ACAGATGTTGTTGAGGCTATATCCACTGCTAGTAGGCTGGGAGGCGTCAA
ACACTACTCGACAGGGTGTTGAGATGGANTGAAGTCGAGGGTTGTGATGT
CGAGATTGAGTGCATCTTCAGGAATGATTGTGCGGTGAAATTTGATGTCC
TTGATTTCTTGGATCATGTCGAAGTGGGATGTCCATAGTGAGCGAAGTGA
GCCTGGAAGGACGTCATCCCATTGAAGTTTGTGATTGACTAGTTCATGCA
GATCTAGTTTGAGACCAGCAGTGATTGGAGTCATCTTTCCAGTTGGGTCG
AAGATTTCAGATACTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007883XLOC_007883Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014083-exon-sc0000180-1491911889:211637..212105TCONS_00014083-exon-sc0000180-1491911889:211637..212105Clytia hemisphaericaexon
TCONS_00014083-exon-sc0000180-1510915933:211637..212105TCONS_00014083-exon-sc0000180-1510915933:211637..212105Clytia hemisphaericaexon
TCONS_00014083-exon-sc0000180-1575043694:211637..212105TCONS_00014083-exon-sc0000180-1575043694:211637..212105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000180supercontigsc0000180:211637..212105 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.764263	0.696757	0.679146	0.195453	0.516831	0.145411	0	0	0	0.196677	0.187583	0.199469	0.35191	0.0942453	0	0	0.102435	0	1.03748	0.473454	0	0.112807	0	0.0437548	0.204692	1.28725	0	0	0.151452	0.229447
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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