TCONS_00014072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014072
Unique NameTCONS_00014072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014072 ID=TCONS_00014072|Name=TCONS_00014072|organism=Clytia hemisphaerica|type=transcript|length=354bp
CTGAGCAAACTTTACTTGCAACTGAGCTGATGATTCGACTCAATCCTCCA
AAATCAAAGACCTCAAAACCATAATGTTCGTAGGGTTCTGAAGCAATAGC
TTTTAGTTCATCAGAATCGATATTCTCGGTGACACCAACAGTGAAAAAAG
CAATTCCCATATCTTTTAAAGGATTGACCAAAGTGGAAATTTCTTCAGTA
CAAGATGTACATTTCCCGTTCGTGAGTAAGATCACAACTTTGACAACGCC
TTGACGTGATTGTCCGTAAGGTGAGAATACGCTATCACGTAAAACACGGA
TGACATCATCGGTTGCGGTACCGCCTGATCCTTGGTGAACCAGGTTTTCg
acct
Run BLAST on NCBI

transcript from alignment at sc0000180:348923..349340-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014072 ID=TCONS_00014072|Name=TCONS_00014072|organism=Clytia hemisphaerica|type=transcript|length=418bp|location=Sequence derived from alignment at sc0000180:348923..349340- (Clytia hemisphaerica)
CTGAGCAAACTTTACTTGCAACTGAGCTGATGATTCGACTCAATCCTCCA
AAATCAAAGACCTCAAAACCATAATGTTCGTAGGGTTCTGAAGCAATAGC
TTTTAGTTCATCAGAATCGATATTCTCGGTGACACCAACAGTGAAAAAAG
CAATTCCCATATCTTTTAAAGGATTGACCAAAGTGGAAATTTCTTCAGTA
CAAGATGTACATTTCCCGTTCGTGAGTAAGATCACAACTTTGACAACGCC
TTGACGTGATTGTCCGTAAGGTGAGAACACGCTATCACGTAACACACGGA
TGACGTCATCGGTTGCGGTACCACCTGGNGTAAGGTGAGAATACGCTATC
ACGTAAAACACGGATGACATCATCGGTTGCGGTACCGCCTGATCCTTGGT
GAACCAGGTTTTCGACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007872XLOC_007872Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014072-exon-sc0000180-1575043694:349071..349340TCONS_00014072-exon-sc0000180-1575043694:349071..349340Clytia hemisphaericaexon
TCONS_00014072-exon-sc0000180-1575043694:348923..349006TCONS_00014072-exon-sc0000180-1575043694:348923..349006Clytia hemisphaericaexon
TCONS_00014072-exon-sc0000180-1510915933:349071..349340TCONS_00014072-exon-sc0000180-1510915933:349071..349340Clytia hemisphaericaexon
TCONS_00014072-exon-sc0000180-1510915933:348923..349006TCONS_00014072-exon-sc0000180-1510915933:348923..349006Clytia hemisphaericaexon
TCONS_00014072-exon-sc0000180-1491911889:349071..349340TCONS_00014072-exon-sc0000180-1491911889:349071..349340Clytia hemisphaericaexon
TCONS_00014072-exon-sc0000180-1491911889:348923..349006TCONS_00014072-exon-sc0000180-1491911889:348923..349006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000180supercontigsc0000180:348923..349340 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.914069	0.238596	0	0.124528	0.19619	0	0.144531	0.469598	0	0	0	0	0	0	0.317187	0.298195	15.921	23.0496	0	0	30.7062	25.8615	0.83849	3.68738	0	0.00235694	0	0.358051	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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