TCONS_00014021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014021
Unique NameTCONS_00014021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014021 ID=TCONS_00014021|Name=TCONS_00014021|organism=Clytia hemisphaerica|type=transcript|length=743bp
TATATAACATCGCATTCAATTCCATGTGCAAAAGTTTCCAGAGGCTCATC
AAACAATGGAAAATGCCCCttaacaaatttttattttttttaagggTAAA
AGCAGccataaatctaaaaatgaTCCGTTTTCTTAGAAGGATTCACTATT
GCTTTGTTTCCTAATGACCAATTAATTAGGTGCTACTCATTAAAAGATGC
CAGAATGGGAACATTGTGAATTGTGACTGTGTAGGGTATATATCAGTAGT
GTATATCAGTCTAATACACAaactactcatccgctgagctaagtttcatc
attgattaaaatatttctatcaAATTAGACTACAGTtaataaaaatcatt
taataAAAGGACCTGTACAATACGATTGATTAGACAGCCATAGAAAAATA
GTTTTGTTCCCGTCACGCAGCGTTTGTTAAAAATACATACGGGCAGGCGG
GACGGGCGGAAAGATTTCCAGGTTTTTGAAAGTTGGGTCAGAAAGCCAAT
TTTTGCTTTGATCTGGGAGGGGCTGTATCTTTTGTGTTCTTCTTGCCAAG
TATAGTTAAAAAATGCTGTTCTCCCACTTAATTTATCAGtgttatttgtt
ttgtttatgtgtTCATTTGTTCTGGGGAGAAGAGCtagagaaaaaagcta
tacagATGAAAGCACAAGTTgctttttctggattttttccCGCTTCTCCT
CATTGGAAAAGCAGCAGAAAATATGAAGGGGGGTGAcgcgaac
Run BLAST on NCBI

transcript from alignment at sc0000175:275363..276105

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014021 ID=TCONS_00014021|Name=TCONS_00014021|organism=Clytia hemisphaerica|type=transcript|length=743bp|location=Sequence derived from alignment at sc0000175:275363..276105 (Clytia hemisphaerica)
gttcgcgTCACCCCCCTTCATATTTTCTGCTGCTTTTCCAATGAGGAGAA
GCGggaaaaaatccagaaaaagcAACTTGTGCTTTCATctgtatagcttt
tttctctaGCTCTTCTCCCCAGAACAAATGAacacataaacaaaacaaat
aacaCTGATAAATTAAGTGGGAGAACAGCATTTTTTAACTATACTTGGCA
AGAAGAACACAAAAGATACAGCCCCTCCCAGATCAAAGCAAAAATTGGCT
TTCTGACCCAACTTTCAAAAACCTGGAAATCTTTCCGCCCGTCCCGCCTG
CCCGTATGTATTTTTAACAAACGCTGCGTGACGGGAACAAAACTATTTTT
CTATGGCTGTCTAATCAATCGTATTGTACAGGTCCTTTtattaaatgatt
tttattaACTGTAGTCTAATTtgatagaaatattttaatcaatgatgaaa
cttagctcagcggatgagtagttTGTGTATTAGACTGATATACACTACTG
ATATATACCCTACACAGTCACAATTCACAATGTTCCCATTCTGGCATCTT
TTAATGAGTAGCACCTAATTAATTGGTCATTAGGAAACAAAGCAATAGTG
AATCCTTCTAAGAAAACGGAtcatttttagatttatggCTGCTTTTAccc
ttaaaaaaaataaaaatttgttaaGGGGCATTTTCCATTGTTTGATGAGC
CTCTGGAAACTTTTGCACATGGAATTGAATGCGATGTTATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007840XLOC_007840Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014021-exon-sc0000175-1491911889:275363..276105TCONS_00014021-exon-sc0000175-1491911889:275363..276105Clytia hemisphaericaexon
TCONS_00014021-exon-sc0000175-1510915933:275363..276105TCONS_00014021-exon-sc0000175-1510915933:275363..276105Clytia hemisphaericaexon
TCONS_00014021-exon-sc0000175-1575043694:275363..276105TCONS_00014021-exon-sc0000175-1575043694:275363..276105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:275363..276105 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0664377	0.0647872	0.0752242	0	0.089595	0.0707992	0.341665	0.239897	0.111972	0.138695	0.134621	0.0442472	0.0883713	0.504759	0	0	0	0.0511198	0	0	0	0	0	0	0.855975	0.44563	0	0.0972236	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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