TCONS_00014009 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014009
Unique NameTCONS_00014009
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014009 ID=TCONS_00014009|Name=TCONS_00014009|organism=Clytia hemisphaerica|type=transcript|length=346bp
TAAATGTAAATGAGAGCTGGGACCTGTTCCTAAAGCAAATGATCGAGCTC
CGAAACCTTTATGTGCCAACTTCcaacaataacaacaaagaCTTGCCAAA
TAAGATCAAAAAAGGCAAATGCCCATTAAATTCAAACACTTGTTACCTAA
TTAATGCGAAACGAAAAGCACATAGAAAATGGATCAACTCTCTACATGAT
GAAGACACTGAAAGATATAGAAGAGAGTATGTAACAACCCGTAATAACGC
CAAAAGAGCCCTGACTCGATCCAAAAGAGAATTCGAGAAAAAGATCAGCG
AACAGTCCAAAACAAACCCAAAAAGATTCTGGAAATACATACGTAG
Run BLAST on NCBI

protein sequence of TCONS_00014009-protein

>TCONS_00014009-protein ID=TCONS_00014009-protein|Name=TCONS_00014009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
NVNESWDLFLKQMIELRNLYVPTSNNNNKDLPNKIKKGKCPLNSNTCYLI
NAKRKAHRKWINSLHDEDTERYRREYVTTRNNAKRALTRSKREFEKKISE
QSKTNPKRFWKYIR
Run BLAST on NCBI

transcript from alignment at sc0000175:42753..43098

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014009 ID=TCONS_00014009|Name=TCONS_00014009|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at sc0000175:42753..43098 (Clytia hemisphaerica)
CTACGTATGTATTTCCAGAATCTTTTTGGGTTTGTTTTGGACTGTTCGCT
GATCTTTTTCTCGAATTCTCTTTTGGATCGAGTCAGGGCTCTTTTGGCGT
TATTACGGGTTGTTACATACTCTCTTCTATATCTTTCAGTGTCTTCATCA
TGTAGAGAGTTGATCCATTTTCTATGTGCTTTTCGTTTCGCATTAATTAG
GTAACAAGTGTTTGAATTTAATGGGCATTTGCCTTTTTTGATCTTATTTG
GCAAGtctttgttgttattgttgGAAGTTGGCACATAAAGGTTTCGGAGC
TCGATCATTTGCTTTAGGAACAGGTCCCAGCTCTCATTTACATTTA

Coding sequence (CDS) from alignment at sc0000175:42753..43098

>TCONS_00014009 ID=TCONS_00014009|Name=TCONS_00014009|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0000175:42753..43098 (Clytia hemisphaerica)
ACGTATGTATTTCCAGAATCTTTTTGGGTTTGTTTTGGACTGTTCGCTGA
TCTTTTTCTCGAATTCTCTTTTGGATCGAGTCAGGGCTCTTTTGGCGTTA
TTACGGGTTGTTACATACTCTCTTCTATATCTTTCAGTGTCTTCATCATG
TAGAGAGTTGATCCATTTTCTATGTGCTTTTCGTTTCGCATTAATTAGGT
AACAAGTGTTTGAATTTAATGGGCATTTGCCTTTTTTGATCTTATTTGGC
AAGtctttgttgttattgttgGAAGTTGGCACATAAAGGTTTCGGAGCTC
GATCATTTGCTTTAGGAACAGGTCCCAGCTCTCATTTACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007828XLOC_007828Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014009-proteinTCONS_00014009-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014009-exon-sc0000175-1491911889:42753..43098TCONS_00014009-exon-sc0000175-1491911889:42753..43098Clytia hemisphaericaexon
TCONS_00014009-exon-sc0000175-1510915933:42753..43098TCONS_00014009-exon-sc0000175-1510915933:42753..43098Clytia hemisphaericaexon
TCONS_00014009-exon-sc0000175-1575043694:42753..43098TCONS_00014009-exon-sc0000175-1575043694:42753..43098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:42753..43098 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.84733	0.758447	2.18401	1.15612	2.5802	2.23363	2.07211	5.74442	4.73571	2.95836	19.8438	1.29404	2.18986	1.7437	2.03771	1.6122	0	2.12787	0.886356	2.48916	0.556741	2.05773	1.83085	1.98951	2.0969	3.65893	2.28615	2.38506	2.27064	2.57846
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top