TCONS_00013912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013912
Unique NameTCONS_00013912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013912 ID=TCONS_00013912|Name=TCONS_00013912|organism=Clytia hemisphaerica|type=transcript|length=289bp
cctttttcacggtaatcaaacagtctgattgacatcacctggatatttat
tacaaattatctattgacagtttcttctttcttctctaTTCCTATTTCAG
CGGTATGGTTTTGCCTTCCAGCCTTCGTTCATTCACCATGACAAATACCA
TATTAACCATTAAAGTAGTTTTACACGTTGGATGtactgtcaactgcttt
aaagccagattgacattataTGTTTTTACGAGATCTGAATCGCTGCTTCA
AATACGCTgagtttgcacaaagatagcaGTTGTTCAACN
Run BLAST on NCBI

transcript from alignment at sc0000174:27087..27375

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013912 ID=TCONS_00013912|Name=TCONS_00013912|organism=Clytia hemisphaerica|type=transcript|length=289bp|location=Sequence derived from alignment at sc0000174:27087..27375 (Clytia hemisphaerica)
NGTTGAACAACtgctatctttgtgcaaactcAGCGTATTTGAAGCAGCGA
TTCAGATCTCGTAAAAACAtataatgtcaatctggctttaaagcagttga
cagtaCATCCAACGTGTAAAACTACTTTAATGGTTAATATGGTATTTGTC
ATGGTGAATGAACGAAGGCTGGAAGGCAAAACCATACCGCTGAAATAGGA
Atagagaagaaagaagaaactgtcaatagataatttgtaataaatatcca
ggtgatgtcaatcagactgtttgattaccgtgaaaaagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007766XLOC_007766Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013912-exon-sc0000174-1491911889:27087..27375TCONS_00013912-exon-sc0000174-1491911889:27087..27375Clytia hemisphaericaexon
TCONS_00013912-exon-sc0000174-1510915933:27087..27375TCONS_00013912-exon-sc0000174-1510915933:27087..27375Clytia hemisphaericaexon
TCONS_00013912-exon-sc0000174-1575043694:27087..27375TCONS_00013912-exon-sc0000174-1575043694:27087..27375Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:27087..27375 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.33753	6.14955	3.79606	3.9132	9.47856	6.17678	5.46967	10.3198	4.05346	7.89402	9.65997	3.39511	6.83738	3.51016	4.89159	9.39541	6.25427	6.62328	2.12234	4.55043	8.37332	6.20579	6.58612	11.0547	0	9.56942	9.19709	5.11097	4.44646	5.51246
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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