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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013865 ID=TCONS_00013865|Name=TCONS_00013865|organism=Clytia hemisphaerica|type=transcript|length=1538bp
ATTAAGGTTTAATGGAAgcgtgatttttcaaaatttattttaaatttgtt
ttttaaatactgTACCACTATGTGCTTCTTTATACGGTTTTGCTCTCAAC
TCAAATAACCAATCAACGCTATTTTCTTTACCGCAAACTGTCTCTGCAAC
CTTTTGAATGAACTTGGCACGGTATCCAAACCCCAACTTCCTTAAATTCT
CTTCAACGCCTGTTTTCGATAAAGCTTCCATAGTGGGGAAGGAATAATAT
TTCGTCCCTTCAAAAGTCGCTATGTGGTCACCATAATGTTCCgctaattt
ttcaaccaattgagaaatccgcgaaatattattattttgcGAGCATATAA
AACTGAATAAATTCTCAACAGGGTCTTGACGTAATATACGTATGCCATAA
AAAGGTGTTTCAAGCTCTTGAAAAAACAAATCTGTTTCACTCCACTTTTG
ATATAATTCTTCTACTTTAACATTCATTTGGAAATAGTCtgttaaaaaat
ctttgtcaGGGTCTGTAAGAtctattgattttttctgtTCTGAAGTTTCG
TTGTCTTCTCTTTCAAGGCCTGCAAGCTTGACAGATTTCGTCTTCTCCTC
AATTTTACGATCTTTAGCAGGGTCTGTAGGCTTGCTAGCTTTTTTCTGTT
CTGTGGTATCAACCGAAGTTTGATACTCAATATCTCCCTGGTCAAGCTGT
TTTAAAAGCCAGAGTTTACGGTTCAAAACACCAACCCATGTGTTTGGATC
TTGTGTAGACTGCTTCCAACGAAATGATTGACCGCATGATAAAACGAGCC
CAAGGTTTAGTTCCTTAGGATTGCAAGAAAGACGATGCCAAATACGATTC
ATTGTGAAAATCTTTACACGAGAAGTAATAATGCTCAAGTGAAGTTCAAA
TATAANTCATTGTGAAAATCTTTACACGAGAAGTAATAATGCTCAAGTAA
AGTTCAAATATAAATTACAAAGAATGAATCAATCAATACACAAAGAATAC
ACTCAGAATATTGCTTAGGAATCGTAAGAATTCTCAAAACCACGAAAAAT
AGAACTATTATTCCTCCACAACAAATCAACTCAAGAATGCTTCCCAGATA
CAGTTATTGAATGATACCATAGAATAACCACCAAATTATTTAATTTAAAT
GGATCCAAAAATTTACTCCTTTTTGGTCGAATCTTTAGATGAATCAGCTC
TTTTTGGAAACATGCATGCAAAGAATGAATAAATGAAATACAAGAAAATC
AAAGCCACGAAAATGATCACATATAAAACTGCATCATCcattttggattt
cattttggtttcgtttctttttttaactttggaatttgatcTTATTCTTT
TTAATTCCTTAAATAGAAAACAGAAATAGTCAACATGTACAATTTTAAGT
AATACAATTCATTAGAGAGAATCTTTTTTTAGTGACGACCACGTTGTCCT
CTAATAAATTAGGCGGATTAAAAACGAGGATCAAACCCTTGCGTGTGAAA
TATACCGTTCGTAACAGTTTTAATAACAAGGTgtcatt Run BLAST on NCBI transcript from alignment at sc0000174:120092..121750- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013865 ID=TCONS_00013865|Name=TCONS_00013865|organism=Clytia hemisphaerica|type=transcript|length=1659bp|location=Sequence derived from alignment at sc0000174:120092..121750- (Clytia hemisphaerica)
ATTAAGGTTTAATGGAAGCGTGATTTTTCAAAATTTATTTTAAATTTGTT
TTTTAAATACTGTACCACTATGTGCTTCTTTATACGGTTTTGCTCTCAAC
TCAAATAACCAATCAACGCTATTTTCTTTACCGCAAACTGTCTCTGCAAC
CTTTTGAATGAACTTGGCACGGTATCCAAACCCCAACTTCCTTAAATTCT
CTTCAACGCCTGTTTTCGATAAAGCTTCCATAGTGGGGAAGGAATAATAT
TTCGTCCCTTCAAAAGTCGCTATGTGGTCACCATAATGTTCCGCTAATTT
TTCAACCAATTGAGAAATCCGCGAAATATTATTATTTTGCGAGCATATAA
AACTGAATAAATTCTCAACAGGGTCTTGACGTAATATACGTATGCCATAA
AAAGGTGTTTCAAGCTCTTGAAAAAACAAATCTGTTTCACTCCACTTTTG
ATATAATTCTTCTACTTTAACATTCATTTGGAAATAGTCTGTTAAAAAAT
CTTTGTCAGGGTCTGTAAGATCTATTGATTTTTTCTGTTCTGAAGTTTCG
TTGTCTTCTCTTTCAAGGCCTGCAAGCTTGACAGATTTCGTCTTCTCCTC
AATTTTACGATCTTTAGCAGGGTCTGTAGGTTTGACAGATTTCTTCTGTT
CTGTGGTATCAACCANCTTCGTTGTCTTCTTTGTCAGGGCCTGCAAGCTT
GACAGATTTTGTCTTCTCCTCAATTTCACCCTTATTAGCAGGGTCTGTAG
GCTTGCTAGCTTTTTTCTGTTCTGTGGTATCAACCGAAGTTTGATACTCA
ATATCTCCCTGGTCAAGCTGTTTTAAAAGCCAGAGTTTACGGTTCAAAAC
ACCAACCCATGTGTTTGGATCTTGTGTAGACTGCTTCCAACGAAATGATT
GACCGCATGATAAAACGAGCCCAAGGTTTAGTTCCTTAGGATTGCAAGAA
AGACGATGCCAAATACGATTCATTGTGAAAATCTTTACACGAGAAGTAAT
AATGCTCAAGTGAAGTTCAAATATAANTCATTGTGAAAATCTTTACACGA
GAAGTAATAATGCTCAAGTAAAGTTCAAATATAAATTACAAAGAATGAAT
CAATCAATACACAAAGAATACACTCAGAATATTGCTTAGGAATCGTAAGA
ATTCTCAAAACCACGAAAAATAGAACTATTATTCCTCCACAACAAATCAA
CTCAAGAATGCTTCCCAGATACAGTTATTGAATGATACCATAGAATAACC
ACCAAATTATTTAATTTAAATGGATCCAAAAATTTACTCCTTTTTGGTCG
AATCTTTAGATGAATCAGCTCTTTTTGGAAACATGCATGCAAAGAATGAA
TAAATGAAATACAAGAAAATCAAAGCCACGAAAATGATCACATATAAAAC
TGCATCATCCATTTTGGATTTCATTTTGGTTTCGTTTCTTTTTTTAACTT
TGGAATTTGATCTTATTCTTTTTAATTCCTTAAATAGAAAACAGAAATAG
TCAACATGTACAATTTTAAGTAATACAATTCATTAGAGAGAATCTTTTTT
TAGTGACGACCACGTTGTCCTCTAATAAATTAGGCGGATTAAAAACGAGG
ATCAAACCCTTGCGTGTGAAATATACCGTTCGTAACAGTTTTAATAACAA
GGTGTCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013865-exon-sc0000174-1575043694:121122..121750 | TCONS_00013865-exon-sc0000174-1575043694:121122..121750 | Clytia hemisphaerica | exon |
| TCONS_00013865-exon-sc0000174-1575043694:120092..121000 | TCONS_00013865-exon-sc0000174-1575043694:120092..121000 | Clytia hemisphaerica | exon |
| TCONS_00013865-exon-sc0000174-1510915933:121122..121750 | TCONS_00013865-exon-sc0000174-1510915933:121122..121750 | Clytia hemisphaerica | exon |
| TCONS_00013865-exon-sc0000174-1510915933:120092..121000 | TCONS_00013865-exon-sc0000174-1510915933:120092..121000 | Clytia hemisphaerica | exon |
| TCONS_00013865-exon-sc0000174-1491911889:121122..121750 | TCONS_00013865-exon-sc0000174-1491911889:121122..121750 | Clytia hemisphaerica | exon |
| TCONS_00013865-exon-sc0000174-1491911889:120092..121000 | TCONS_00013865-exon-sc0000174-1491911889:120092..121000 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:120092..121750 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008534 | oxidized purine nucleobase lesion DNA N-glycosylase activity |
| GO:0003684 | damaged DNA binding |
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006289 | nucleotide-excision repair |
| GO:0006284 | base-excision repair |
| GO:0006281 | DNA repair |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006284 |
base-excision repair |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0006289 |
nucleotide-excision repair |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0003684 |
damaged DNA binding |
| molecular_function |
GO:0008534 |
oxidized purine nucleobase lesion DNA N-glycosylase activity |
Blast
BLAST of TCONS_00013865 vs. Swiss-Prot (Human)
Match: OGG1 (N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE=1 SV=2) HSP 1 Score: 179.874 bits (455), Expect = 5.868e-51 Identity = 92/259 (35.52%), Postives = 140/259 (54.05%), Query Frame = -3
Query: 70 IWHRLSCNPKELNLGLVLSCGQSFRWKQSTQDPNTWVGVLNRKLWLLKQLDQGDIEYQTSVDTTEQKKASKPTDPAKDRKIEEKTKSVKLAGLEREDNETSEQKKSIDLTDPDK-DFLTDYFQMNVKVEELYQKWSETDLFFQELETPFYGIRILRQDPVENLFSFICSQNNNISRISQLVEKLAEHYGDHIATFEGTKYYSFPTMEALSKTGVEENLRKLGFGYRAKFIQKVAETVCGKENSVDWLFELRAKPYKEAH 843
+W + C EL L LVL GQSFRW++ Q P W GVL ++W L Q ++ + +V ++ +AS+PT PD+ + + YFQ++V + +LY W D FQE+ F G+R+LRQDP+E LFSFICS NNNI+RI+ +VE+L + +G + + Y+ FP+++AL+ VE +LRKLG GYRA+++ A + ++ + WL +LR Y+EAH
Sbjct: 22 LWASIPCPRSELRLDLVLPSGQSFRWRE--QSPAHWSGVLADQVWTLTQTEE---QLHCTVYRGDKSQASRPT--------------------------------------PDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAH 237
The following BLAST results are available for this feature:
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