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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013861 ID=TCONS_00013861|Name=TCONS_00013861|organism=Clytia hemisphaerica|type=transcript|length=1173bp
tggaacgctttagcatacatagaaaaaaagttcaaagggttcaaagttca
cggaaaaatgaaacatttggtttgacatcaacgaaagttgcatgacttct
ggacactgctgttatggtgtccattccagccaagccatattttatcattc
tacagaAATCCCCGCTTTTGCACTTGTACCtgcaaaacctcaaattttgc
acctgcACTTGAATTTTTCCGAGTTGTGCACTCGAGATCTCGAGCAAACG
TGCCACACTCTGCAAACCAAACTGGCCCCACCACAAGACAAGACAAGCTG
TCTGATGACAAGCTAAAACATTAGGAAAAGTTTTTGGATaggaaaattca
aattcaataataACATATATATAACACTTACCATTCTGCATAAAAGTCTA
CAACCACAAGCTGTTCGGATGGTGTTTGTGATaactcttttgaaaaatta
atatcAGAAAGAATTTCTACGACAGCTGTAGCGGTCGCCATCTTgaggga
aaacgaaagtagtttgCAGCGATGGCTTAAGTTTGTTTACAAACCATAAG
TGACATTGGTTTGTAGCAAAGTAGATATGACTTCTACCTTCGATTCGGCC
ATTTTTCGGGAAACTCGTGAACAAATTTTTCAGAcataaaaagtatattt
taaagTACCAGAACTTACAACAGGAGAAATGTCGAACATCTTCAACAATC
AATTTGATCCCACAGAGGACACAGAAGACGAATTTGGAGGAAAGCTTTCA
CAAAATAAAGTACACATTCGTATTCAACAGAGAAACGGTCGTAAAACTAT
TACAACACTTCAAGGAATAGAAGATAAATATGATCAAAAGAAACTAgcaa
aagcattcaaaaagGAATTCAACTGTAACGGAACAGTGGTCGAAGATGAA
CAATACGGTGAAGTTATACAATTAAGTGGAGATCAAAGAGCAAACATACA
ACAGTTTCTCGTTGATGTTGGTATATGTAAAAAAGACCATTTGGTGGTTC
ACGGTTTCTAAGAATCTATTTGGTATATCTTATACTGAATGCAATTCACC
ATCTCTTCGCATCTCtagaaattttagtttttttctctttGCACCTGAAT
GATGATATTATTTAAGAATGCTTTATTTTGTAAATACAAATTGCAATGCA
ATGACTTTGGATCAGGAAACTCA Run BLAST on NCBI transcript from alignment at sc0000174:685090..689346+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013861 ID=TCONS_00013861|Name=TCONS_00013861|organism=Clytia hemisphaerica|type=transcript|length=4257bp|location=Sequence derived from alignment at sc0000174:685090..689346+ (Clytia hemisphaerica)
tggaacgctttagcatacatagaaaaaaagttcaaagggttcaaagttca
cggaaaaatgaaacatttggtttgacatcaacgaaagttgcatgacttct
ggacactgctgttatggtgtccattccagccaagccatattttatcattc
tacagaAATCCCCGCTTTTGCACTTGTACCtgcaaaacctcaaattttgc
acctgcACTTGAATTTTTCCGAGTTGTGCACTCGAGATCTCGAGCAAACG
TGCCACACTCTGCAAACCAAACTGGCCCCACCACAAGACAAGACAAGCTG
TCTGATGACAAGCTAAAACATTAGGAAAAGTTTTTGGATaggaaaattca
aattcaataataACATATATATAACACTTACCATTCTGCATAAAAGTCTA
CAACCACAAGCTGTTCGGATGGTGTTTGTGATaactcttttgaaaaatta
atatcAGAAAGAATTTCTACGACAGCTGTAGCGGTCGCCATCTTgaggga
aaacgaaagtagtttgCAGCGATGGCTTAAGTTTGTTTACAAACCATAAG
TGACATTGGTTTGTAGCAAAGTAGATATGACTTCTACCTTCGATTCGGCC
ATTTTTCGGGAAACTCGTGAACAAATTTTTCAGAcataaaaagtatattt
taaagTACCAGAACTTACAACAGGAGAAATGTCGAACATCTTCAACAATC
AATTTGGTAAgatattatcatttttttttgaaaacttgctTTTAAAACCA
TAACTTTTAGTAAGTCATGTTTTGTGGATATTTCCAAAATGATAAAAGGG
ATGGCGATTGCATCAGCCCAGCCAGCATGACACTCCTAcatctgatttat
tttttcttacatGAAAAGTTTcatatcaacataaaaggggttctgttttc
gcaaagcaaagaaatctcaaaatgtacaaGAAATCGACCCATTATTAATT
AATGCAGAATTTAAATAaaaggggccgtcgacaaacgattttcctttttt
ttaaccgcttctggccgtaaggggtgggtgggggtcactgcaatgccgtt
aaaaaagttttaaaaaaagggAAAGTTTTGAGTCAAAATTTCATTGCTTC
AACCCCCCTGGCCACAGCGCACAGGGAGGCTAAAAGGTTCATCAACAACT
ATCACCTAGAAATAGCTTTAGGTCAGGGGCCATCTACTCAGCTAGGGGTC
ACCATCATTTattcaaactaaaatggctGAATTCTAAATTATTGTGTTAA
TTCAGTCACAGCGAATTTAGAATAGCAAAAACTTCAGCATGCAGCGCAAA
ACTTTGTCCATTTCATAGATTTCATTAtacattttttcacatttaattaA
AGTTCTGTCTCAGTGAGACGGTGATatcttttggtatttttgtcaaCAGA
CTTATGTAGCATTCAATTGTGCTTAAAAAAGAGATTTGAAGCACTTCTAA
AGATTCATCttagttttcaaattttccggCTAGTACGAAACGCAGGTTCA
GGTTACAGGTTTCAGGGccagggttcaggtttcagggccAGGGTTCAGGG
TTCAGAGTTCAGGTTAAAATTGTCTACAATNTTCAGGTTACAGGGCCAGG
GTTCAGGTCTCAGGGccagggttcaggtttcagggccagggttcaggttt
cagggccAGGGTTCAGAGGGTTCAGGTTAAAATTGTCTACAATACAGACT
TGCCTTTTTCAAATTACTGACCTCTTTACTTCTCTTTTCTCTTTGCTCTC
TTTGTGTGGGGGGAATCAAACAAAAAAGTGAGGGCTGAATATGGATGCAC
AAGAATGCTTTCACACCTGACCTTTCACATctttatttgataaaagtgtT
TACAGTCAGTGTTTCGCTTGAgtaataaaagaataaaagctACGTTGTTA
CGAACGACaatgaatgaaaaaattaagttagtTTTGCCAGGTTTTAcgga
aaagagaaaaaaaatttgtcagcTTCTATTCCAGCTAATTTCATCATACC
GAATAAGTCTTATAAAAAcctatttcttttcaaaaaatgggtGGGTGATT
TGATTACTTTcttgctttgaaagaaaaaataatttaatgataCGGATGAT
TTCCACTGGGcccagtatggattccacgaaatctcgcgccaaagatattt
ttccgtgcagcaagcctcacgccaagcaaaatttctatTGTACCaacatt
taatttttcaataagggtgcaagatgggaaaagaggcgcatgcgccaaca
taattaataaattgacgcgagcgcaagcgagcgaaagcaaatttagccaa
acNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaat
caaacaatctttgtaagtacccttacgccaatgcgccaaaaacgtttcag
ttgtacgccgaagaacttcggcgttagttacacgaaatccatactggCAC
TGGGCCTGATCTTACTACTCTTACAAAAAACGATAAGCGTTTTGCCATAT
TTCTTTTTACAGGAGGAATAatagaatttattatttttcgtTATTATTCT
GCCCATTAATACATTTTTCAATATAATAGTAATTGTTCTTGGTCAATGCT
TTGCGTTATAATTCTGCTTGTAATAGAATATTTTAATTTCAATAATCTTA
ATTATTGTCTATTCAACCAGTTTTGTAACAAAAAGATAATTTCTACTACG
TCAATTGAATTATGAAATATTTTCAAAATCAAAGCAACGCTGAAAGTAGC
AGTAGTAGTAGTCAGTACCTGCTGTCTcatattttaaaaagtattgttCA
CCACcaaaaactattaaaagtttaaaaagaaaacacactTTTATTATATA
GAACACAAACTCTAGCAAATGGTCTGcagaataaataaatatacCTCGGA
ACATTCTGGTCTGCAATGTAGACAATTTTAACATGAACCTTGAAACCTGA
ACCCTGGCTctgaaacctgaaccctggcagaccctggccctgaaacctga
accctgACCCTGAAACCTGTGACCTGGACCTGCGTTTCGTACTAGCCGCA
AATTTTCATAGTTTCTCAATCTTAAGGGCCACctagaatatttttccaaa
ttggTATCCAAATTCGTATTCTAATAAGCCATGTTTCATAAGAAACTATT
TTACAATGATCCTTGTcaattttgattaatttgaaatttgctcgCGGTTT
AGATCCCACAGAGGACACAGAAGACGAATTTGGAGGAAAGCTTTCACAAA
ATAAAGTACACATTCGTATTCAACAGAGAAACGGTCGTAAAACTATTACA
ACACTTCAAGGAATAGAAGATAAATATGATCAAAAGAAACTAgcaaaagc
attcaaaaaggtACCACTTTTTCGTGCTTCCTCAAAAATCAGAAACATTT
GCAACTTTaattctaaaaacatttttaggttatGTTAATCATATAATCAC
TTTATTAAAAGCTATACAATACAGCTACACAAGTTTCGGATCAAGGCTGG
GATCGCTTAGCATTCtagtttatcatttgaaaaatttgctttgaccaaCA
CTGATATTTACCATATATGGTTATTGGGTCAAGAGCTATCGTTTGCAatg
cttttactttacgagataaTCAGAGATAATGAAACAGATTTTGCTAATTT
CAGATTTCGAACAAAGAATAAATGTGTAGCTGGCCTGAGAGTCAACTATG
GTTTGGACCAGAATAATACCAAAAGCCTTTCCCTTCCTTTGTTCATTTAG
AGGGTTACGTTTAAAAAATATGTAATGATAATGTTGTTTATTCTTCAGGA
ATTCAACTGTAACGGAACAGTGGTCGAAGATGAACAATACGGTGAAGTTA
TACAATTAAGTGGAGATCAAAGAGCAAACATACAACAGTTTCTCGTTGAT
GTTGGTATATGTAAAAAAGACCATTTGGTGGTTCACGGTTTCTAAGAATC
TATTTGGTATATCTTATACTGAATGCAATTCACCATCTCTTCGCATCTCt
agaaattttagtttttttctctttGCACCTGAATGATGATATTATTTAAG
AATGCTTTATTTTGTAAATACAAATTGCAATGCAATGACTTTGGATCAGG
AAACTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013861-exon-sc0000174-1491911889:685090..685795 | TCONS_00013861-exon-sc0000174-1491911889:685090..685795 | Clytia hemisphaerica | exon |
| TCONS_00013861-exon-sc0000174-1510915933:685090..685795 | TCONS_00013861-exon-sc0000174-1510915933:685090..685795 | Clytia hemisphaerica | exon |
| TCONS_00013861-exon-sc0000174-1575043694:685090..685795 | TCONS_00013861-exon-sc0000174-1575043694:685090..685795 | Clytia hemisphaerica | exon |
| TCONS_00013861-exon-sc0000174-1491911889:688442..688599 | TCONS_00013861-exon-sc0000174-1491911889:688442..688599 | Clytia hemisphaerica | exon |
| TCONS_00013861-exon-sc0000174-1510915933:688442..688599 | TCONS_00013861-exon-sc0000174-1510915933:688442..688599 | Clytia hemisphaerica | exon |
| TCONS_00013861-exon-sc0000174-1575043694:688442..688599 | TCONS_00013861-exon-sc0000174-1575043694:688442..688599 | Clytia hemisphaerica | exon |
| TCONS_00013861-exon-sc0000174-1491911889:689038..689346 | TCONS_00013861-exon-sc0000174-1491911889:689038..689346 | Clytia hemisphaerica | exon |
| TCONS_00013861-exon-sc0000174-1510915933:689038..689346 | TCONS_00013861-exon-sc0000174-1510915933:689038..689346 | Clytia hemisphaerica | exon |
| TCONS_00013861-exon-sc0000174-1575043694:689038..689346 | TCONS_00013861-exon-sc0000174-1575043694:689038..689346 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:685090..689346 + |
Blast
BLAST of TCONS_00013861 vs. Swiss-Prot (Human)
Match: EIF1 (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 4.663e-31 Identity = 69/113 (61.06%), Postives = 84/113 (74.34%), Query Frame = 1
Query: 679 MSNIFN-NQFDPTEDTE--DEFGGKLSQNKVHIRIQQRNGRKTITTLQGIEDKYDQKKLAKAFKKEFNCNGTVVEDEQYGEVIQLSGDQRANIQQFLVDVGICKKDHLVVHGF 1008
MS I N + FDP D D+ +++ +HIRIQQRNGRKT+TT+QGI D YD+KKL KAFKK+F CNGTV+E +YGEVIQL GDQR NI QFLV++G+ K D L VHGF
Sbjct: 1 MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
The following BLAST results are available for this feature:
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