TCONS_00013860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013860
Unique NameTCONS_00013860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013860 ID=TCONS_00013860|Name=TCONS_00013860|organism=Clytia hemisphaerica|type=transcript|length=3294bp
ATAACATTGTTTGAAGAAACCGCTTTTAAAAAGAAACCGAACTTATTCAT
AATCAATGAGGTATACAGATAAATCGGTTGTCATGGTGATTATGAAAATT
GAGGGTTGTAACGGAGTATACGTCTATcccaaaaaggaaaaaagagtATT
TGATATAGTATAATATTATTAATATCATTAtcaatttaacaaaaaatata
aaaaataaatttttttaaatgaaaatattaaaattcttttatttttgaat
gaaatttcaattattttattaccctcttttttcttcttccatgCACGGAC
TGATTAGTTACCAACCCACTTGGAAGGCTTATGAAATGAAAGACATTACA
TTCTTTTAGAAATTTCTGCTCGCATTTATCATAAATACAAACAAATCTAC
TAGGCAAACCGAAAAAGCCGGGAATAAAGAAGGGTAGTACGGTTTTCCCG
AAGGAAATAGCATAGgaaataataaattaaaaattaaaactattTATAAC
AAATTTACATTTTGCTGAATGGTCACATCATTTAGAATCTTTCAATACAC
TTTGCCCGTTTATCAATACTCTTAAAATACAACCAGGTATTTTAGTCGTT
TCGGGACCTTTAAAGTTTGTTTATGACCAATCAGCAAAAAGTTTTCTAAA
GTATACTAAATTTAAACACTTATTCGCTCAGAGTCACTCTATACCTCTGC
AGTCCACTTAAATAAAAGTGCTCTATCTTGTCAAGGTGTTCAAATCAAAG
ATGCCATCCAAGTTTCGCCCCATTTAGCCCAAATACTTCTTGATATGAAG
TTACTTCATATTGGTAACATAATTGCAAGAttaatttcttcactttttaa
cTTGATATGCTGCACATTTAAAGCTCTGTGTTTAGTCAAGCCATGAACCT
TTTTTATGTCGAAATGTTATAAACTGAGATTCAAACCGTAATCTCCCTCC
TTACATCCAACGGCTAGCATAAAACACTAAAGTGATTAACACCGCAAAAC
TTAACATCACTTTTCCATCACGAAGCCGCAGTCGCTATTTTTCCATTTGT
TTTTGCTGTCGGAatttcacttttgtttttattatttttcaaaagttcat
catttgATTCGACACCCCCGGTTGGGTCCCATTCCATGTTATTGGATTTC
TTACTACCGGTTCGGGAAATCCCATTGGATTGAGTGTTCGTGGTTTGCTT
TTGATCTGAATTATTCTCCTCAGTCTCTGTTACGGGAACAACGGTCAAAT
CATCGGGGAAATAATCGGATGAACGAGAAACCGATCCTGATGAAGAATCG
GAATAATGGTCCCACTCTAAACTAACAATAGAGTTTCTATTTGGAGCTTT
TTCTCCATTTTCACGTTCATTTTTCTTCGGTTTCTTTGGTTTTGACTTTT
TCGGGGCATCTTTTTCCCCGTTTTTCATTCCGTTCGATTTATCggatttc
tttttcgttttctttttggaTGGTTTCGGTTCTGGGACATCCTTCTTTTC
GGCTAACGGGAAAAAAGTCGGTCCGCGTgactttctttcttcttctaATA
GGTCCGGTTGTAGTTGTTGTGGCTGCTGTGGTTGTTTTTTGGCTTTTACA
GCGTTGTTGGTAGCTGCTAATTTTGACAGTTTGATTGGAGCTTTTTCCTT
AGGAAGGCTGTCCACGTCAATAGCGGAGTCCATGTGTACGAAGGAAGGAT
AATCAGGGGCTACTCCCGACTTTTTTGGGGTTCCATCAGGGGTAGCTTTC
GGTGGTTGCCTAGCCTCTCCATCGGTATCATCTAGAAGCGGAGTACTATC
TGTAGGGATACCTACACTCCTTCGTTGGGCTGTATCCTCTTCTTTACGGT
CTGCTTCCTCTGTTTTGTTGTCTTTATCAATCAAAGGTGTTTCTGCAACG
GCATCTCCACCTTGGTCTGAATCAGCTCCATCCTCATTGAAGGAGGTTTC
CTTATGTTTGGTAACAGGTGATCGCTCAATCGATTTCGGTGTGAAGAATT
TACCACCTTTTCctttcttcttttccttcttttcttttttctctttcttt
ttcttcgctTTCTTGGCGGCCTTCAAGTCGACCATTTCCTTGACGTCACC
ATTCGGTTGTTCTTTCTCGTACGTTTCATTGGCTGAATACCTCATGACGT
AATCTTCATTGTCACAGATATCACACTGGTCGGGTGGAATACACTCGCAT
ACTTTCAGATCACTATCTTTCTTTTTCGAACATGGCGAATCACGACATAA
ACAACAACACGTGTTTCGTAAAATGAATATGATTGGTTGAAGTGATACAG
GGAAAATGATAGCAACTACTCGAATGACCCTGCGTATTTTCTCCGTAAAC
AAGTAGTCAAACCAATGCATCGTAACACCGTAACTTCCAACCCATACCAA
AAAACATATTATCACCATTAAAAATATGGGTAAACTTGTGTCTCTTCTCT
GATTCCCAgtccttttcttcttccttatTTGGTGATAGGGGAACCTGAGT
ACTAGACATAGCATCATGAAATAATACAATAACTCGATCCCAGTTAAAAG
CCAGTCTACTGTAGTTTTAGGCTCAAAAACAATACATAAATAATTCCATT
TGTCAAGTTTAATCCATGACATAACTGCTAAAACACCTGATAGCATTAAC
CCTTCTAAAATGTAAACGATGCCTTTGAATATGGCTTCTCGTTCAGTTTC
GATATCACCACGAACACTTCGGTGGAAAGTTAACATCAACATAGTCCACA
CTGAACCACCAAGAGCAAATAATTTGACCGAAGTGAACCCTTGGCAGAAT
TGATGGTGCCAATAGGTGTGATTTTGTGTCAAATATATTGCCATAGAAAG
GCCATAAAAAGCTAACAGTATATTAAAGAACATTAAAGCGATCCCGAAGA
CGCCGACAAGAGATGATTGAACCATCGTGCACATACCGATGACGAATATC
AAATTGACCAATAAGGTGAAGGCACTAACACCACCAATAATGATGTAATA
ATAAAAATTACTGTTATCAGCTTCAACTTCGTTTGCATCTCCTACACATA
TACAAGATGATGTCCCATTGACTGGCATTTTATTGTCACCACATGCTTGC
CGACACGTTTGATTAATGCCAGGGCTAACTTGGGTATAAAGTTCATTGCG
ATTAAtgtctttgatttcttttaggTTCCATCGATGAAATAATGTAAAAT
AGTCATCGTTTATGGTGCAATTAATGTGAAAAGAGGTGACGTTAAGTTGA
GTATTTGAACTGGTGAAGTTATCGGGACATCCATCAAGTATCCT
Run BLAST on NCBI

transcript from alignment at sc0000174:590228..594224+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013860 ID=TCONS_00013860|Name=TCONS_00013860|organism=Clytia hemisphaerica|type=transcript|length=3997bp|location=Sequence derived from alignment at sc0000174:590228..594224+ (Clytia hemisphaerica)
ATAACATTGTTTGAAGAAACCGCTTTTAAAAAGAAACCGAACTTATTCAT
AATCAATGAGGTATACAGATAAATCGGTTGTCATGGTGATTATGAAAATT
GAGGGTTGTAACGGAGTATACGTCTATcccaaaaaggaaaaaagagtATT
TGATATAGTATAATATTATTAATATCATTAtcaatttaacaaaaaatata
aaaaataaatttttttaaatgaaaatattaaaattcttttatttttgaat
gaaatttcaattattttattaccctcttttttcttcttccatgCACGGAC
TGATTAGTTACCAACCCACTTGGAAGGCTTATGAAATGAAAGACATTACA
TTCTTTTAGAAATTTCTGCTCGCATTTATCATAAATACAAACAAATCTAC
TAGGCAAACCGAAAAAGCCGGGAATAAAGAAGGGTAGTACGGTTTTCCCG
AAGGAAATAGCATAGgaaataataaattaaaaattaaaactattTATAAC
AAATTTACATTTTGCTGAATGGTCACATCATTTAGAATCTTTCAATACAC
TTTGCCCGTTTATCAATACTCTTAAAATACAACCAGGTATTTTAGTCGTT
TCGGGACCTTTAAAGTTTGTTTATGACCAATCAGCAAAAAGTTTTCTAAA
GTATACTAAATTTAAACACTTATTCGCTCAGAGTCACTCTATACCTCTGC
AGTCCACTTAAATAAAAGTGCTCTATCTTGTTTCTTTTTAAGGTCAAGGT
GTTCAAATCAAAGATGCCATCCAAGTTTCGCCCCATTTAGCCCAAATACT
TCTTGATATGAAGTTACTTCATATTGGTAACATAATTGCAAGAttaattt
cttcactttttaacTTGATATGCTGCACATTTAAAGCTCTGTGTTTAGTC
AAGCCATGAACCTTTTTTATGTCGAAATGTTATAAACTGAGATTCAAACC
GTAATCTCCCTCCTTACATCCAACGGCTAGCATAAAACACTAAAGTGATT
AACACCGCAAAACTTAACATCACTTTTCCATCACGAAGCCGCAGTCGCTA
TTTTTCCATTTGTTTTTGCTGTCGGAatttcacttttgtttttattattt
ttcaaaagttcatcatttgATTCGACACCCCCGGTTGGGTCCCATTCCAT
GTTATTGGATTTCTTACTACCGGTTCGGGAAATCCCATTGGATTGAGTGT
TCGTGGTTTGCTTTTGATCTGAATTATTCTCCTCAGTCTCTGTTACGGGA
ACAACGGTCAAATCATCGGGGAAATAATCGGATGAACGAGAAACAGATCC
TGATGAAGAATCGGAATAATGGTCCCACTCTAAACTAACAATAGAGTTTC
TATTTGGAGCTTTTTCTCCATTTTCACGNTATACCTCTGCAGTCCACTTA
AATAAAAGTGCTCTATCTTGTTTCTTTTTAAGGTCAAGGTGTTCAAATCA
AAGATGCCATCCAAGTTTCGCCCCATTTAGCCCAAATACTTCTTGATATG
AAGTTACTTCATATTGGTAACATAATTGCAAGAttaatttcttcactttt
taacTTGATATGCTGCACATTTAAAGCTCTGTGTTTAGTCAAGCCATGAA
CCTTTTTTATGTCGAAATGTTATAAACTGAGATTCAAACCGTAATCTCCC
TCCTTACATCCAACGGCTAGCATAAAACACTAAAGTGATTAACACCGCAA
AACTTAACATCACTTTTCCATCACGAAGCCGCAGTCGCTATTTTTCCATT
TGTTTTTGCTGTCGGAatttcacttttgtttttattatttttcaaaagtt
catcatttgATTCGACACCCCCGGTTGGGTCCCATTCCATGTTATTGGAT
TTCTTACTACCGGTTCGGGAAATCCCATTGGATTGAGTGTTCGTGGTTTG
CTTTTGATCTGAATTATTCTCCTCAGTCTCTGTTACGGGAACAACGGTCA
AATCATCGGGGAAATAATCGGATGAACGAGAAACCGATCCTGATGAAGAA
TCGGAATAATGGTCCCACTCTAAACTAACAATAGAGTTTCTATTTGGAGC
TTTTTCTCCATTTTCACGTTCATTTTTCTTCGGTTTCTTTGGTTTTGACT
TTTTCGGGGCATCTTTTTCCCCGTTTTTCATTCCGTTCGATTTATCggat
ttctttttcgttttctttttggaTGGTTTCGGTTCTGGGACATCCTTCTT
TTCGGCTAACGGGAAAAAAGTCGGTCCGCGTgactttctttcttcttcta
ATAGGTCCGGTTGTAGTTGTTGTGGCTGCTGTGGTTGTTTTTTGGCTTTT
ACAGCGTTGTTGGTAGCTGCTAATTTTGACAGTTTGATTGGAGCTTTTTC
CTTAGGAAGGCTGTCCACGTCAATAGCGGAGTCCATGTGTACGAAGGAAG
GATAATCAGGGGCTACTCCCGACTTTTTTGGGGTTCCATCAGGGGTAGCT
TTCGGTGGTTGCCTAGCCTCTCCATCGGTATCATCTAGAAGCGGAGTACT
ATCTGTAGGGATACCTACACTCCTTCGTTGGGCTGTATCCTCTTCTTTAC
GGTCTGCTTCCTCTGTTTTGTTGTCTTTATCAATCAAAGGTGTTTCTGCA
ACGGCATCTCCACCTTGGTCTGAATCAGCTCCATCCTCATTGAAGGAGGT
TTCCTTATGTTTGGTAACAGGTGATCGCTCAATCGATTTCGGTGTGAAGA
ATTTACCACCTTTTCctttcttcttttccttcttttcttttttctctttc
tttttcttcgctTTCTTGGCGGCCTTCAAGTCGACCATTTCCTTGACGTC
ACCATTCGGTTGTTCTTTCTCGTACGTTTCATTGGCTGAATACCTCATGA
CGTAATCTTCATTGTCACAGATATCACACTGGTCGGGTGGAATACACTCG
CATACTTTCAGATCACTATCTTTCTTTTTCGAACATGGCGAATCACGACA
TAAACAACAACACGTGTTTCGTAAAATGAATATGATTGGTTGAAGTGATA
CAGGGAAAATGATAGCAACTACTCGAATGACCCTGCGTATTTTCTCCGTA
AACAAGTAGTCAAACCAATGCATCGTAACACCGTAACTTCCAACCCATAC
CAAAAAACATATTATCACCATTAAAAATATGGGTAAACTTGTGTCTCTTC
TCTGATTCCCAgtccttttcttcttccttatTTGGTGATAGGGGAACCTG
AGTACTAGACATAGCATCATGAAATAATACAATAACTCGATCCCAGTTAA
AAGCCAGTCTACTGTAGTTTTAGGCTCAAAAACAATACATAAATAATTCC
ATTTGTCAAGTTTAATCCATGACATAACTGCTAAAACACCTGATAGCATT
AACCCTTCTAAAATGTAAACGATGCCTTTGAATATGGCTTCTCGTTCAGT
TTCGATATCACCACGAACACTTCGGTGGAAAGTTAACATCAACATAGTCC
ACACTGAACCACCAAGAGCAAATAATTTGACCGAAGTGAACCCTTGGCAG
AATTGATGGTGCCAATAGGTGTGATTTTGTGTCAAATATATTGCCATAGA
AAGGCCATAAAAAGCTAACAGTATATTAAAGAACATTAAAGCGATCCCGA
AGACGCCGACAAGAGATGATTGAACCATCGTGCACATACCGATGACGAAT
ATCAAATTGACCAATAAGGTGAAGGCACTAACACCACCAATAATGATGTA
ATAATAAAAATTACTGTTATCAGCTTCAACTTCGTTTGCATCTCCTACAC
ATATACAAGATGATGTCCCATTGACTGGCATTTTATTGTCACCACATGCT
TGCCGACACGTTTGATTAATGCCAGGGCTAACTTGGGTATAAAGTTCATT
GCGATTAAtgtctttgatttcttttaggTTCCATCGATGAAATAATGTAA
AATAGTCATCGTTTATGGTGCAATTAATGTGAAAAGAGGTGACGTTAAGT
TGAGTATTTGAACTGGTGAAGTTATCGGGACATCCATCAAGTATCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007741XLOC_007741Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013860-exon-sc0000174-1491911889:590228..590956TCONS_00013860-exon-sc0000174-1491911889:590228..590956Clytia hemisphaericaexon
TCONS_00013860-exon-sc0000174-1510915933:590228..590956TCONS_00013860-exon-sc0000174-1510915933:590228..590956Clytia hemisphaericaexon
TCONS_00013860-exon-sc0000174-1575043694:590228..590956TCONS_00013860-exon-sc0000174-1575043694:590228..590956Clytia hemisphaericaexon
TCONS_00013860-exon-sc0000174-1491911889:591660..594224TCONS_00013860-exon-sc0000174-1491911889:591660..594224Clytia hemisphaericaexon
TCONS_00013860-exon-sc0000174-1510915933:591660..594224TCONS_00013860-exon-sc0000174-1510915933:591660..594224Clytia hemisphaericaexon
TCONS_00013860-exon-sc0000174-1575043694:591660..594224TCONS_00013860-exon-sc0000174-1575043694:591660..594224Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:590228..594224 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.50678	1.63473	2.83563	1.22337	0.0891868	0.0214565	0	0	0	0	0.0599532	4.32231e-06	0	1.49795e-06	0.205775	0.14025	0	0.869722	0.000820032	0.00863373	1.75545	2.45126	3.59051	3.84907	0	5.11327e-08	0.599758	2.96976e-05	0.660812	3.05952
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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