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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013846 ID=TCONS_00013846|Name=TCONS_00013846|organism=Clytia hemisphaerica|type=transcript|length=1312bp
TTTCAATCGGAataaatacttttaaaaatgaagatgacctGAATCCTGGC
TGGACAGatatctttttctatttttgagcacaatcttaaaaatccaaGCA
AAGGTATTTTCACAAAATATGAAATGGGGAACATGGCAACATCTTTATTA
TTTCACATTGGTAAAATTTGCTATTTCCACAATGTTAAAAGTGAACCAAT
GTGGAATTTATGATGCAGAATTTTCACAAATCAAATACGACCATCGTTTG
ACTGGAGATCTAACAGACACATTATTCTTAGTTTCACTTCGTCAATGTCT
TACGAAATGCATGCTTCATACAACTTGCAAGTCTGTAAACTATATACGGC
AGAATGAAACTTGTGAATTATCTTCGTCGCTTTCATACAAAACATGTGAT
CTTCCAGGAGTTGTTTATCAACCAGCTAAAGGATGGAATCATTTCCAAAC
TGATATCAAAAAAAGAGCGgtTGGTAGCCGATGTGCTGTAAATAATCCGT
GCCAAGATTTTGAAAGATGCGAGGATATATGCAATGGTGGACATCAGTGC
GTTATGATTGGAGctTATCTTCAAAGCTGTTTAAATGGGCCCTTTACACA
ATCGACGACTTATTCAGTTTCACATCCAGCTAATAAAGCTTTTGACATGA
ATGAACAAACCTATTCACACACAAGTGGGAATAAAGGCGTATCTCATTGG
ATCAAAGTTCAATTCGGAGGACGGCAATTTTTTGTGAGTGGCATAGAAGT
TGTTAATCGTGTATTAAGCAGCCACCAATCAAAACGAAACGATAATGCTG
ATATTATCTCCATCCTTAATGGTGTGGAAACAAAAGTTGGAAACATCGGG
GAGCTTGGATTGCGACGTTCATACGGCGTTATGCGAAAGGCTGATGCGTT
GAAATTGTATTACGACGCCTCTGTTGCAGCAGAGGTTGATGGAATAATGA
ACTTTATGGAGATCTGGGTTAATGGCTGGATTGAGTAAATTTACACGCTA
taaaaatatccatgatgaaaatggccaaaaaaataagaatatgctaagaa
tatcagcatcatggaattttgctactcaagctaagaatgctatttttaga
gcattctaaattataaattgtcaattatccccaagtaaGACTCACTCCGT
tcacaaaaaatatcattttatgcttgggacgtatgtactaaatgtcaAAT
CTAGTCTGGAATTAGAATCCTAACCTAAGAcacatattttcaagatattt
ccaggatcgGAAATCTCCTATTTCGCCCAgtatattttaggatgattttc
ccaaaaaagtta Run BLAST on NCBI protein sequence of TCONS_00013846-protein >TCONS_00013846-protein ID=TCONS_00013846-protein|Name=TCONS_00013846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
MKWGTWQHLYYFTLVKFAISTMLKVNQCGIYDAEFSQIKYDHRLTGDLTD
TLFLVSLRQCLTKCMLHTTCKSVNYIRQNETCELSSSLSYKTCDLPGVVY
QPAKGWNHFQTDIKKRAVGSRCAVNNPCQDFERCEDICNGGHQCVMIGAY
LQSCLNGPFTQSTTYSVSHPANKAFDMNEQTYSHTSGNKGVSHWIKVQFG
GRQFFVSGIEVVNRVLSSHQSKRNDNADIISILNGVETKVGNIGELGLRR
SYGVMRKADALKLYYDASVAAEVDGIMNFMEIWVNGWIE Run BLAST on NCBI transcript from alignment at sc0000174:376616..378792+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013846 ID=TCONS_00013846|Name=TCONS_00013846|organism=Clytia hemisphaerica|type=transcript|length=2177bp|location=Sequence derived from alignment at sc0000174:376616..378792+ (Clytia hemisphaerica)
TTTCAATCGGAataaatacttttaaaaatgaagatgacctGAATCCTGGC
TGGACAGatatctttttctatttttgagcacaatcttaaaaatccaaGCA
AAGGTATTTTCACAAAATATGAAATGGGGAACATGGCAACATCTTTATTA
TTTCACATTGGTAAAATTTGCTATTTCCACAATGTTAAAAGTGAACCAAT
GTGGAATTTATGATGCAGAATTTTCACAAATCAAATACGACCATCGTTTG
ACTGGAGATCTAACAGACACATTATTCTTAGTTTCACTTCGTCAATGTCT
TACGAAATGCATGCTTCATACAACTTGCAAGTCTGTAAACTATATACGGC
AGAATGAAACTTGTGAATTATCTTCGTCGCTTTCATACAAAACATGTGAT
CTTCCAGGAGTTGTTTATCAACCAGCTAAAGGATGGAATCATTTCCAAAC
TGATATCAAAAAAAGAGCGGTAGGATTTTCATCCTTTACACAGTTTTTAC
GTTAATAAATAAAGGGCCTCCTTCATTGGTTTGCGTAAATGCATGAATTG
GCTTTTTCGATTGAGTGAATgcgtaaaaattgaaaaaaatgcttgaatgc
gtgaattaaaaTAAACTtacgtgaacgtgaaaatccacttttcgATTGCG
TGAATGTACACTTGTGAATGCATTTTTTGCGGGAATACAGGAAAATTGTC
TTTTTCGGCTGgtacaatttttcgattttcaaatgtttcctCGATTTTTC
CGGAAATCTTTATCGAATTTTCCGAAAAATCAGGTTTGAGTGAAACTCGA
GANcgattttcaaatgtttcctCGATTTTTCCGGAaatctttttcgaatt
ttccgAAAAATCAGGTTTGAGTGAAACTCgagaaaaaatgcgtgaatgca
tgaatttcgaaaaagaaatgcgtgatttcaaaatttgaaaagatttttaa
tagttttttttttcatttaaaggtTGGTAGCCGATGTGCTGTAAATAATC
CGTGCCAAGATTTTGAAAGATGCGAGGATATATGCAATGGTGGACATCAG
TGCGTTATGATTGGAGGTAAAAAACAATTGAGTTACCTTAAACGGTTTTT
TTTCctaataagagtgatatcgtttgcttactcatcaattttaattcaca
agctttttcacattggattgacacggctgtggagcaagattggtcagaaa
tttttttcgctTATACCAGCACAATATAGGCAGAACAAGAATAGCCGgaa
caattttgaccaaatttcgatctttcaggggataaaaagatcaaattttc
ctttgttccTGATAGATCGCAGTAAAGACACACATAATCAAAAACAAGGC
ATAAAAACCtagagctgtctattgtgtagactagatttgactttataata
ttttacaataatgaaattttttttgtagctTATCTTCAAAGCTGTTTAAA
TGGGCCCTTTACACAATCGACGACTTATTCAGTTTCACATCCAGCTAATA
AAGCTTTTGACATGAATGAACAAACCTATTCACACACAAGTGGGAATAAA
GGCGTATCTCATTGGATCAAAGTTCAATTCGGAGGACGGCAATTTTTTGT
GAGTGGCATAGAAGTTGTTAATCGTGTATTAAGCAGCCACCAATCAAAAC
GAAACGATAATGCTGATATTATCTCCATCCTTAATGGTGTGGAAACAAAA
GTTGGAAACATCGGGGAGCTTGGATTGCGACGTTCATACGGCGTTATGCG
AAAGGCTGATGCGTTGAAATTGTATTACGACGCCTCTGTTGCAGCAGAGG
TTGATGGAATAATGAACTTTATGGAGATCTGGGTTAATGGCTGGATTGAG
TAAATTTACACGCTAtaaaaatatccatgatgaaaatggccaaaaaaata
agaatatgctaagaatatcagcatcatggaattttgctactcaagctaag
aatgctatttttagagcattctaaattataaattgtcaattatccccaag
taaGACTCACTCCGTtcacaaaaaatatcattttatgcttgggacgtatg
tactaaatgtcaAATCTAGTCTGGAATTAGAATCCTAACCTAAGAcacat
attttcaagatatttccaggatcgGAAATCTCCTATTTCGCCCAgtatat
tttaggatgattttcccaaaaaagtta Coding sequence (CDS) from alignment at sc0000174:376616..378792+ >TCONS_00013846 ID=TCONS_00013846|Name=TCONS_00013846|organism=Clytia hemisphaerica|type=CDS|length=2610bp|location=Sequence derived from alignment at sc0000174:376616..378792+ (Clytia hemisphaerica)
ATGAAATGGGGAACATGGCAACATCTTTATTATTTCACATTGGTAAAATT
TGCTATTTCCACAATGTTAAAAGTGAACCAATGTGGAATTTATGATGCAG
AATTTTCACAAATCAAATACGACCATCGTTTGACTGGAGATCTAACAGAC
ACATTATTCTTAGTTTCACTTCGTCAATGTCTTACGAAATGCATGCTTCA
TACAACTTGCAAGTCTGTAAACTATATACGGCAGAATGAAACTTGTGAAT
TATCTTCGTCGCTTTCATACAAAACATGTGATCTTCCAGGAGTTGTTTAT
CAACCAGCTAAAGGATGGAATCATTTCCAAACTGATATCAAAAAAAGAGC
GgtTGGTAGCCGATGTGCTGTAAATAATCCGTGCCAAGATTTTGAAAGAT
GCGAGGATATATGCAATGGTGGACATCAGTGCGTTATGATTGGAGctTAT
CTTCAAAGCTGTTTAAATGGGCCCTTTACACAATCGACGACTTATTCAGT
TTCACATCCAGCTAATAAAGCTTTTGACATGAATGAACAAACCTATTCAC
ACACAAGTGGGAATAAAGGCGTATCTCATTGGATCAAAGTTCAATTCGGA
GGACGGCAATTTTTTGTGAGTGGCATAGAAGTTGTTAATCGTGTATTAAG
CAGCCACCAATCAAAACGAAACGATAATGCTGATATTATCTCCATCCTTA
ATGGTGTGGAAACAAAAGTTGGAAACATCGGGGAGCTTGGATTGCGACGT
TCATACGGCGTTATGCGAAAGGCTGATGCGTTGAAATTGTATTACGACGC
CTCTGTTGCAGCAGAGGTTGATGGAATAATGAACTTTATGGAGATCTGGG
TTAATGGCTGGATTGAGTAAATGAAATGGGGAACATGGCAACATCTTTAT
TATTTCACATTGGTAAAATTTGCTATTTCCACAATGTTAAAAGTGAACCA
ATGTGGAATTTATGATGCAGAATTTTCACAAATCAAATACGACCATCGTT
TGACTGGAGATCTAACAGACACATTATTCTTAGTTTCACTTCGTCAATGT
CTTACGAAATGCATGCTTCATACAACTTGCAAGTCTGTAAACTATATACG
GCAGAATGAAACTTGTGAATTATCTTCGTCGCTTTCATACAAAACATGTG
ATCTTCCAGGAGTTGTTTATCAACCAGCTAAAGGATGGAATCATTTCCAA
ACTGATATCAAAAAAAGAGCGgtTGGTAGCCGATGTGCTGTAAATAATCC
GTGCCAAGATTTTGAAAGATGCGAGGATATATGCAATGGTGGACATCAGT
GCGTTATGATTGGAGctTATCTTCAAAGCTGTTTAAATGGGCCCTTTACA
CAATCGACGACTTATTCAGTTTCACATCCAGCTAATAAAGCTTTTGACAT
GAATGAACAAACCTATTCACACACAAGTGGGAATAAAGGCGTATCTCATT
GGATCAAAGTTCAATTCGGAGGACGGCAATTTTTTGTGAGTGGCATAGAA
GTTGTTAATCGTGTATTAAGCAGCCACCAATCAAAACGAAACGATAATGC
TGATATTATCTCCATCCTTAATGGTGTGGAAACAAAAGTTGGAAACATCG
GGGAGCTTGGATTGCGACGTTCATACGGCGTTATGCGAAAGGCTGATGCG
TTGAAATTGTATTACGACGCCTCTGTTGCAGCAGAGGTTGATGGAATAAT
GAACTTTATGGAGATCTGGGTTAATGGCTGGATTGAGTAAATGAAATGGG
GAACATGGCAACATCTTTATTATTTCACATTGGTAAAATTTGCTATTTCC
ACAATGTTAAAAGTGAACCAATGTGGAATTTATGATGCAGAATTTTCACA
AATCAAATACGACCATCGTTTGACTGGAGATCTAACAGACACATTATTCT
TAGTTTCACTTCGTCAATGTCTTACGAAATGCATGCTTCATACAACTTGC
AAGTCTGTAAACTATATACGGCAGAATGAAACTTGTGAATTATCTTCGTC
GCTTTCATACAAAACATGTGATCTTCCAGGAGTTGTTTATCAACCAGCTA
AAGGATGGAATCATTTCCAAACTGATATCAAAAAAAGAGCGgtTGGTAGC
CGATGTGCTGTAAATAATCCGTGCCAAGATTTTGAAAGATGCGAGGATAT
ATGCAATGGTGGACATCAGTGCGTTATGATTGGAGctTATCTTCAAAGCT
GTTTAAATGGGCCCTTTACACAATCGACGACTTATTCAGTTTCACATCCA
GCTAATAAAGCTTTTGACATGAATGAACAAACCTATTCACACACAAGTGG
GAATAAAGGCGTATCTCATTGGATCAAAGTTCAATTCGGAGGACGGCAAT
TTTTTGTGAGTGGCATAGAAGTTGTTAATCGTGTATTAAGCAGCCACCAA
TCAAAACGAAACGATAATGCTGATATTATCTCCATCCTTAATGGTGTGGA
AACAAAAGTTGGAAACATCGGGGAGCTTGGATTGCGACGTTCATACGGCG
TTATGCGAAAGGCTGATGCGTTGAAATTGTATTACGACGCCTCTGTTGCA
GCAGAGGTTGATGGAATAATGAACTTTATGGAGATCTGGGTTAATGGCTG
GATTGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013846-exon-sc0000174-1491911889:376616..377084 | TCONS_00013846-exon-sc0000174-1491911889:376616..377084 | Clytia hemisphaerica | exon |
| TCONS_00013846-exon-sc0000174-1510915933:376616..377084 | TCONS_00013846-exon-sc0000174-1510915933:376616..377084 | Clytia hemisphaerica | exon |
| TCONS_00013846-exon-sc0000174-1575043694:376616..377084 | TCONS_00013846-exon-sc0000174-1575043694:376616..377084 | Clytia hemisphaerica | exon |
| TCONS_00013846-exon-sc0000174-1491911889:377588..377681 | TCONS_00013846-exon-sc0000174-1491911889:377588..377681 | Clytia hemisphaerica | exon |
| TCONS_00013846-exon-sc0000174-1510915933:377588..377681 | TCONS_00013846-exon-sc0000174-1510915933:377588..377681 | Clytia hemisphaerica | exon |
| TCONS_00013846-exon-sc0000174-1575043694:377588..377681 | TCONS_00013846-exon-sc0000174-1575043694:377588..377681 | Clytia hemisphaerica | exon |
| TCONS_00013846-exon-sc0000174-1491911889:378044..378792 | TCONS_00013846-exon-sc0000174-1491911889:378044..378792 | Clytia hemisphaerica | exon |
| TCONS_00013846-exon-sc0000174-1510915933:378044..378792 | TCONS_00013846-exon-sc0000174-1510915933:378044..378792 | Clytia hemisphaerica | exon |
| TCONS_00013846-exon-sc0000174-1575043694:378044..378792 | TCONS_00013846-exon-sc0000174-1575043694:378044..378792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:376616..378792 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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