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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013845 ID=TCONS_00013845|Name=TCONS_00013845|organism=Clytia hemisphaerica|type=transcript|length=2584bp
TTCGTCATGATATTGATTTGAATGCTGTATAATATACTGAAAGTTTACTG
AAAGCCTCTTATCAATTCAAATGTACacaaataagattttttataaattt
aaaatttcactttACTTTTTAGGTACCTTGTCAATCATGGTTTGACGATC
CAAACGACACAGAATTAAGTGATTTGATACCCTTCCTTGAGAACATTAGC
TCCGCCGATAGCTGTATTACAGCTCTACAAAATAATTATACCAGATACAG
ACAAGGTTTAGAAATGTCACGAAATCAACACTCCTACAATGGTCAATCTG
AAGGATGATGACGTCCTCGGTTATCAGTTATTGCGATATTGGAATGGCTT
TTCGttcgttttcaaaataagtTTTGGTTGGTAGGCAGGCAAGCGGCCCA
TTTATAAAAAGtgtaaatgattatttttgttcTTAGCCTGTGGTTTATTC
TCCAAGCTCCATGAGAAATTGGGGGTAGTTTATTTGTTTCGCTTTTGATG
GTGCTCTCAGGCTGAACATTTGGAGTGTTCTGATGTGGtatttgaaaaag
tgaaaatgaagtAAGACTGGCATGTATTGCATGTATTGATGAATTAATAC
GGTTGCATTGTCAAAACGAATGAGACTTTAGTTtcacaaaaattatattt
tttgcatATAAGAATCtagctttaaaaattatttgaattctatttttata
cttttttgtcataaaattttttttctctctagcAATTTCGCGAATAAAag
aatatgtaattttttttgttttattattttgatacgaaatattttgaaaa
ttttttcatcagaattattttttatacaaaattttatgtttaaaattGTC
TGTTTTTCTTTAGGTGATAATCGTTTttatactacctgcggttttgtaga
ggtctgcgattcagactattttTTAGGCTAATCTCAACCTATCGAGCACT
GTGAATACTTACATAAAGGTAAGGAAGATAACACTTCCACCAATCAACAC
TACGCACAACGTCGCTTCAACGTTCATCCAACGTTAAATTGACGTTATGA
ATGTTAAATGGACGTTATTAGAATTTTATTGGCGCCCGATGAGTTGAAAT
CAGTCTTTTATTTGAGGTTTTGTAAAATagtatttttgtgctttttTTTT
CTCGGAGAATAATTTTTGGAATgtagtttgttatttttctatAAGTTATT
GTTTATTATTATATACACCACTATTTTTCTATTCACGTGTTAACAAATTA
TACCTCTGTATTCCTCAAGCTTGACATGCGGCTAATCGAGACAAACTCTT
ATTATTTAGAGAATTAGGTAGTCTTTATGGTTGAATTTTACTtgatttta
ggcaaaaaaaaagAGCTCTTTTAAATCAATCATAGATTTTCTGGAAATTA
GGAAACATGGCAAAAACTAGTCACaaataaataattgaaaattacttttt
taCACCAAAGTAACTGGGATAATTTTTTACGAACATTTTCTTCGCAAACA
CTAtgtatttaaaagttttatttttacataagtgtttccgtttcatatca
gagacatatttcatatcaggacagtgtcttgttATTGCTATAGTATGCTT
ATAtaaccaaaaaaatgtttttcttttcctctttctgaccaatcttgctc
cacatccgtgtcaatccaatgtgaaaaagcttgtgaattaaaattgatga
gtaagcaaacgatatcactcttatttaaaaacaaaacctttaaccaaAAT
ATGTCTTTGATAGCCTCCCCGTATACCAATATAATGATTTTCTCCTTCTT
TATTTTTGTGCAGACAAAATTTTATGtaaaatttttcagaatattttata
aAAGTGGTTAGTTTTATGAAATAGAGAACTTTTATAATTAAGAATAAAAT
GCAGAGGCATTTATACCCAATTCGAATAATATCACACACAAGAGATCTAA
ATAAGACAATTTCTATTCAATTCGAAACATTAAAAAANTCGAATAATATC
ACACACAAGAGATCTAAATGAGACAATTTCttcgaaacatttttcatgaa
attattGAAACTTTAAAGACTGTAGCATAAAACTCTCCTAGTATATATTG
AAAGTTGTGCATAAAGGTACTTGCTATGAATTACGATTTGGAAAATCTCC
GATTAAAGGACAATAATTAGCAGTTAGAAGATTTGAAATATCTCGAAAAT
ACTGTTTGAAAATATGTACTTACTCTCGCGGACATTACGTTTTGATCATC
GTTAAAGTAGAGCATGGTCTACACTATGAAGTTTTCACTACAAGAAAGTG
TAAGTTGATCTTACATTTTTCCTGGTCAGTTCAAAACTGAAAGATTTCAA
TGATAATAAACTAAAGaatgaatgaaaatattaagAGTTTATTTCGATCA
TCTTGTTGtatattcatcaatttttttgggTAGTTAggtatttttttgta
cattattctatttttttttctctaaaattttacaATACTTCATATGCAAT
TAAGATGAAATCTATATACCGTTAAATTTTACCCTGTTTCTCTTTTTCGA
ATcactttgaaatgttcttaaacttttattgaaa Run BLAST on NCBI transcript from alignment at sc0000174:372172..374811+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013845 ID=TCONS_00013845|Name=TCONS_00013845|organism=Clytia hemisphaerica|type=transcript|length=2640bp|location=Sequence derived from alignment at sc0000174:372172..374811+ (Clytia hemisphaerica)
TTCGTCATGATATTGATTTGAATGCTGTATAATATACTGAAAGTTTACTG
AAAGCCTCTTATCAATTCAAATGTACacaaataagattttttataaattt
aaaatttcactttACTTTTTAGGTACCTTGTCAATCATGGTTTGACGATC
CAAACGACACAGAATTAAGTGATTTGATACCCTTCCTTGAGAACATTAGC
TCCGCCGATAGCTGTATTACAGCTCTACAAAATAATTATACCAGATACAG
ACAAGGTTTAGAAATGTCACGAAATCAACACTCCTACAATGGTCAATCTG
AAGGATGATGACGTCCTCGGTTATCAGTTATTGCGATATTGGAATGGCTT
TTCGttcgttttcaaaataagtTTTGGTTGGTAGGCAGGCAAGCGGCCCA
TTTATAAAAAGtgtaaatgattatttttgttcTTAGCCTGTGGTTTATTC
TCCAAGCTCCATGAGAAATTGGGGGTAGTTTATTTGTTTCGCTTTTGATG
GTGCTCTCAGGCTGAACATTTGGAGTGTTCTGATGTGGtatttgaaaaag
tgaaaatgaagtAAGACTGGCATGTATTGCATGTATTGATGAATTAATAC
GGTTGCATTGTCAAAACGAATGAGACTTTAGTTtcacaaaaattatattt
tttgcatATAAGAATCtagctttaaaaattatttgaattctatttttata
cttttttgtcataaaattttttttctctctagcAATTTCGCGAATAAAag
aatatgtaattttttttgttttattattttgatacgaaatattttgaaaa
ttttttcatcagaattattttttatacaaaattttatgtttaaaattGTC
TGTTTTTCTTTAGGTGATAATCGTTTttatactacctgcggttttgtaga
ggtctgcgattcagactattttTTAGGCTAATCTCAACCTATCGAGCACT
GTGAATACTTACATAAAGGTAAGGAAGATAACACTTCCACCAATCAACAC
TACGCACAACGTCGCTTCAACGTTCATCCAACGTTAAATTGACGTTATGA
ATGTTAAATGGACGTTATTAGAATTTTATTGGCGCCCGATGAGTTGAAAT
CAGTCTTTTATTTGAGGTTTTGTAAAATagtatttttgtgctttttTTTT
CTCGGAGAATAATTTTTGGAATgtagtttgttatttttctatAAGTTATT
GTTTATTATTATATACACCACTATTTTTCTATTCACGTGTTAACAAATTA
TACCTCTGTATTCCTCAAGCTTGACATGCGGCTAATCGAGACAAACTCTT
ATTATTTAGAGAATTAGGTAGTCTTTATGGTTGAATTTTACTtgatttta
ggcaaaaaaaaagAGCTCTTTTAAATCAATCATAGATTTTCTGGAAATTA
GGAAACATGGCAAAAACTAGTCACAAATAAATAATTGAAAGTTACTTNGG
AAATTAGGAAACATGGCAAAAACTAGTCACaaataaataattgaaaatta
cttttttaCACCAAAGTAACTGGGATAATTTTTTACGAACATTTTCTTCG
CAAACACTAtgtatttaaaagttttatttttacataagtgtttccgtttc
atatcagagacatatttcatatcaggacagtgtcttgttATTGCTATAGT
ATGCTTATAtaaccaaaaaaatgtttttcttttcctctttctgaccaatc
ttgctccacatccgtgtcaatccaatgtgaaaaagcttgtgaattaaaat
tgatgagtaagcaaacgatatcactcttatttaaaaacaaaacctttaac
caaAATATGTCTTTGATAGCCTCCCCGTATACCAATATAATGATTTTCTC
CTTCTTTATTTTTGTGCAGACAAAATTTTATGtaaaatttttcagaatat
tttataaAAGTGGTTAGTTTTATGAAATAGAGAACTTTTATAATTAAGAA
TAAAATGCAGAGGCATTTATACCCAATTCGAATAATATCACACACAAGAG
ATCTAAATAAGACAATTTCTATTCAATTCGAAACATTAAAAAANTCGAAT
AATATCACACACAAGAGATCTAAATGAGACAATTTCttcgaaacattttt
catgaaattattGAAACTTTAAAGACTGTAGCATAAAACTCTCCTAGTAT
ATATTGAAAGTTGTGCATAAAGGTACTTGCTATGAATTACGATTTGGAAA
ATCTCCGATTAAAGGACAATAATTAGCAGTTAGAAGATTTGAAATATCTC
GAAAATACTGTTTGAAAATATGTACTTACTCTCGCGGACATTACGTTTTG
ATCATCGTTAAAGTAGAGCATGGTCTACACTATGAAGTTTTCACTACAAG
AAAGTGTAAGTTGATCTTACATTTTTCCTGGTCAGTTCAAAACTGAAAGA
TTTCAATGATAATAAACTAAAGaatgaatgaaaatattaagAGTTTATTT
CGATCATCTTGTTGtatattcatcaatttttttgggTAGTTAggtatttt
tttgtacattattctatttttttttctctaaaattttacaATACTTCATA
TGCAATTAAGATGAAATCTATATACCGTTAAATTTTACCCTGTTTCTCTT
TTTCGAATcactttgaaatgttcttaaacttttattgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013845-exon-sc0000174-1491911889:372172..373577 | TCONS_00013845-exon-sc0000174-1491911889:372172..373577 | Clytia hemisphaerica | exon |
| TCONS_00013845-exon-sc0000174-1510915933:372172..373577 | TCONS_00013845-exon-sc0000174-1510915933:372172..373577 | Clytia hemisphaerica | exon |
| TCONS_00013845-exon-sc0000174-1575043694:372172..373577 | TCONS_00013845-exon-sc0000174-1575043694:372172..373577 | Clytia hemisphaerica | exon |
| TCONS_00013845-exon-sc0000174-1491911889:373634..374811 | TCONS_00013845-exon-sc0000174-1491911889:373634..374811 | Clytia hemisphaerica | exon |
| TCONS_00013845-exon-sc0000174-1510915933:373634..374811 | TCONS_00013845-exon-sc0000174-1510915933:373634..374811 | Clytia hemisphaerica | exon |
| TCONS_00013845-exon-sc0000174-1575043694:373634..374811 | TCONS_00013845-exon-sc0000174-1575043694:373634..374811 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:372172..374811 + |
Blast
The following BLAST results are available for this feature:
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