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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013835 ID=TCONS_00013835|Name=TCONS_00013835|organism=Clytia hemisphaerica|type=transcript|length=2392bp
cttcgtttgtttatttgtttgagGTGATGACGTTGTATGATAAGATTCAA
TAACATTTGAGAATACAATCTTATCACCTCTCAAACGAAGCATGTCTGAG
AATGGTTACCTCAACGCTGAAACTGCTGTTCAGAATCTGACCATCACCAC
ATCTGCCAACACCACCACTAAGCCACAATTTAAACGTCAGAAATCGCTAG
ATTTAGAAGAAGATCAGCAACGATCAGTTTCGCCATCATCATCACCAAAG
ATGTTCTCATCACCAGAAGGTAGCGTCAATACAAACAGACGTGATTCAAA
TGCCAGTTCTGATTCACAGAAAAGTGCCAAGAAACCAGCATCTTTGGATG
AAATACAAGACCTGTATAGTGCTTTGCAAGACTTGGTCAAAACGAACGTG
AGTACAACACCGTTGCCAGAACGACGTACCAAGATGTTGTCTCCATCACC
AATGAGCAGCCCTAGGTTGAGTGATCGTTCATTAACAGTACCTGAGAAAA
CACTCAGAAAAATCTCCTCAAAAATCACACCGTCCTCTTCTTTTGAGAAA
GAACAAAGCGAAGGAAGTCCAACGCCACGTTTGAAACATCGAAGAGGAGT
TTCAACAGGTACCATGGATTCTGTCATTAATTTAATGCGAATTTCACCGT
TCCCAGGACGTAAATTTTCACACGATGTCAATACAACGAGTCAAAAAGAC
AGTAAAAAATTATCCACTTCTAAAACCCCGAATATGGTCTCCTCCAAGGC
CGGTAAGAAAGAACGCAATAGTGGCGATCATGGAAAACGTTGGAAAGGCT
CCAAATTATTTCACCGATTGCGATCGAAAAGTAACGCCGAATTATCCGAC
AACGACGACAAATTATCAACCGACGACGAGGAATGTGTTCGAGAAAAAAA
CCGCCGTATGTCCGAAGCCGATGCATTGAAATTAAAGCGTAACCGAGATA
GTGGGTTAACACCACCGCAACGTAAAAGTTTACAAGAGGAGAAAAACAAG
GATATCGAGAATTTAGTTGCATCTTTAACCATCAAGAGTTCTGATTCCAA
TTTGTTACAGACACCGAAAGAGACCTTTACGAACCCTTTGAATGAGTTAA
ATCAACTTGAGAGCTGGTTCGAAAAAGCATCCGTTGCACTAAACCCTAAC
GTAGGACGTTATATCTTAAATGATGAATCGAGTAGCGACGCCGCTTCACC
AAACGTACGTGCTAACCGATTCCGTAAGAAGAACGGTAACAAACGTACTG
GTCCGGGAATACGTAGAGCAAACTCTAACGTTGGAACGTCGCACCGTAAT
AAGGAGGAACGACGCGCCAAAAGGAATAAAATGACGTCCAAAAGTTTCGA
TGCAACCGGATTagcgcacgctaaaagtacacCTGATTTATCCAAAACAG
GTGTTGAATCAGAAGATATTTTAAACGATACAGGAATATCGTATAAAGTT
TTAGGACAATTAAATCATTTCACTGAAAATCGAGTGCGCGATTTAACACC
GAAAGACAATAAGAAAGAATCGAAGAGAGTTTCTTTAGATGCTAATTCAG
TTAAACGATTACCTGACACGCCTTTATTCTATGTACCTGGGGACGAAGAG
AATGGAAGACTAAGCCCAAGTGAGttatcaaaaacatttaaaagacAGAA
ATCAGAAGGCTCAATGTTTTACACCgaggaagaaaacaaaaacgcTAAAA
ACTTATTATCTCCACCTGCTGAGTCAGCAATTTCATACGAAAAGCCTCAA
AGAAGTGAATCCTTATCAACTCCTAATAAATCGAATAACAAAAGATCGAA
caacaataaaataaagaacaaaacaaGACCCAAATCAATGTTTGACTATT
TTGATCAAGAAATCTTAGGGGAGGATCCTAACGATGAGGTTTGGTCGTCC
GAAGAAAAAGACATTGTACAACAGAACAATTTTGATAATAACGCTAATTT
TTGTCGAGCCAAAATCATGAATAATGCACACCGACTATCTTTATGTGATT
TGACCAAAACGACTGTGGTTCAAGAGAAAACTTTGTGGGACAAGTTCAGG
AAAGTGGCAGCAAGCAAGAAAGCTAAAGCTTtgATGGCTTGAATCTCAAC
CGAATCCAATCTCTAACTGATCGAAAGGTATGGACAAAGATGACCAAAAT
TTATGTATAAAGATGTTTAAATATAATTATGTTAATTTATATGAGTAATA
TATCATTTTTACACCCTTTTTTATTCCATTTTTGTACAGAATTTATGATA
AGAAATTGAGAAAGTTGAGAATCTAATCGTCAAAAATCCTGAATAAGTTA
TTGCCCAAAAAATCCTGATTTAAATCATCAATTCCTTAAAGGGTAAACAT
TGCGTGAACCACGtttcattaaagagaacaattaaaataacg Run BLAST on NCBI transcript from alignment at sc0000174:295989..300395+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013835 ID=TCONS_00013835|Name=TCONS_00013835|organism=Clytia hemisphaerica|type=transcript|length=4407bp|location=Sequence derived from alignment at sc0000174:295989..300395+ (Clytia hemisphaerica)
cttcgtttgtttatttgtttgagGTGATGACGTTGTATGATAAGGTTGGT
CTGAAGTTGTTCTTATTGTCAGATTTATGGTTTTTATGGTCAGATTAAAG
GGGCGTTTTAATACCGTATCATCTCTaagaatttaaaataaattttagag
gAAAATTGCAGACGATGCTTTTTTATTGCCTtggatatacacgttttttt
tattataagaacgtcaaaaattttcgaagccttcggatgttcttagtttt
ttggattttaagcctaaaaatgttcttaaaacgttcttattttcagaatt
ttttgagcattttgatgtaatttcttaagaaaatgcatgtttttaagtct
ccaaagccttagaatgttcttagaatgttcttaaatttttgggcctcgaa
gccttatgttcttatatagtttgttcttataaaaaaaaaacgtgtaatag
tTATGATCCACTTATTGTAATGATAAACTTGCTTAGTAAGGGATTTAAAT
AGGTGCTGGTTAATATGGTGTATCAAATATTCTTTGACCTCTTCCAGGGG
AGGTATATAGGAAAGAGTTTCATCACAAGCAGAGTCGCATCTAGACAACT
ACATAAGTCAGACAGGGTCTAACTCATTCAATATAGGTTAGTGCTTAAGG
TCAgaactaaaaatattttgctctAATGACGTGGAAGATTAAtcttttaa
tgaatttttttgttttcaatcaaaatttcaacCCGAAAGAAGTGAGATTT
TACTATTTAACATAAAcagttttagtcaaatttttgtccCTATGTTCCTA
TTTTTAAACAACAGCAAACTTCAGAAGTGTGACGTTATGTTtagttttgt
ttcaaaattatcCCCATTAAAGTTTATTTTAAACTCTGTTTTCATTTGGC
CCTTATTTCTGACCCTAACTTTCTCCTGACGATATCATTTAAAGTTTTGA
CGCAGTTAATTTATTTAAAGAACAACTAAAACCTTAATTTGAGTTTAGTC
TACAATACTTCAAACCTTGACCGTCTTTCAGGTCTCAAATGATAGCCTTA
GGAATAAACAGTCTTAagattcaaatttcttttacgAGACTTTCAGGACA
ATCTCTCAAAACAAGATAAAATAAATGGTTGAGAGACCAAGCCGAAATAA
GCCATCAAAAAATATCCTCAATTTGAAAATCACAGCAaagttgtttactt
ttttcctaTTTTGGTTTTCTAAATAACGGATAACTTATCCCCAATCCGGA
AATTCCCGACTAGCGGATCCGGAGGTGCTAATCGCTCTAGAAAGTCTCCT
TGattgttgtttttgaattgggcgctatatttttcaaaaagctcaTCATG
GGGGATCAACATTCAAATTGATACTGTATATTATCGCTATCTTGACGATA
TTCTTGATTCGCTTTTGAAGCTTCTTTGATCCTCTTTGAGATAGAATAAA
ACGCGTTTCAGATTTTTCTCTCTTGTTGccagatgaaatattttgaaagt
caaaaattcttgaACTCTAATCGATCgattgctgatttttttgttgataa
tCGATATCTATAAGagtgtcttttttgaaaagagctttTTCTTCGTGTTT
GgcgattttatttattttagtgtATTTCATGTTTGGATAGCTTGGTATAA
GGTTCAAAAGATGTTAGAGCTACAAACGTTTTTCAAACCCTCAGTCACGA
TGCTTGTGTTTTCGTAATCGATATAGAAGCATTcgtcattaaaaaaaatt
ttcttcaaaaaatttgaaaaataatattattctttctttttcatcatCAG
ATTCAATAACATTTGAGAATACAATCTTATCACCTCTCAAACGAAGCATG
TCTGAGAATGGTTACCTCAACGCTGAAACTGCTGTTCAGAATCTGACCAT
CACCACATCTGCCAACACCACCACTAAGCCACAATTTAAACGTCAGAAAT
CGCTAGATTTAGAAGAAGATCAGCAACGATCAGTTTCGCCATCATCATCA
CCAAAGATGTTCTCATCACCAGAAGGTAGCGTCAATACAAACAGACGTGA
TTCAAATGCCAGTTCTGATTCACAGAAAAGTGCCAAGAAACCAGCATCTT
TGGATGAAATACAAGACCTGTATAGTGCTTTGCAAGACTTGGTCAAAACG
AACGTGAGTACAACACCGTTGCCAGAACGACGTACCAAGATGTTGTCTCC
ATCACCAATGAGCAGCCCTAGGTTGAGTGATCGTTCATTAACAGTACCTG
AGAAAACACTCAGAAAAATCTCCTCAAAAATCACACCGTCCTCTTCTTTT
GAGAAAGAACAAAGCGAAGGAAGTCCAACGCCACGTTTGAAACATCGAAG
AGGAGTTTCAACAGGTACCATGGATTCTGTCATTAATTTAATGCGAATTT
CACCGTTCCCAGGACGTAAATTTTCACACGATGTCAATACAACGAGTCAA
AAAGACAGTAAAAAATTATCCACTTCTAAAACCCCGAATATGGTCTCCTC
CAAGGCCGGTAAGAAAGAACGCAATAGTGGCGATCATGGAAAACGTTGGA
AAGGCTCCAAATTATTTCACCGATTGCGATCGAAAAGTAACGCCGAATTA
TCCGACAACGACGACAAATTATCAACCGACGACGAGGAATGTGTTCGAGA
AAAAAACCGCCGTATGTCCGAAGCCGATGCATTGAAATTAAAGCGTAACC
GAGATAGTGGGTTAACACCACCGCAACGTAAAAGTTTACAAGAGGAGAAA
AACAAGGATATCGAGAATTTAGTTGCATCTTTAACCATCAAGAGTTCTGA
TTCCAATTTGTTACAGACACCGAAAGAGACCTTTACGAACCCTTTGAATG
AGTTAAATCAACTTGAGAGCTGGTTCGAAAAAGCATCCGTTGCACTAAAC
CCTAACGTAGGACGTTATATCTTAAATGATGAATCGAGTAGCGACGCCGC
TTCACCAAACGTACGTGCTAACCGATTCCGTAAGAAGAACGGTAACAAAC
GTACTGGTCCGGGAATACGTAGAGCAAACTCTAACGTTGGAACGTCGCAC
CGTAATAAGGAGGAACGACGCGCCAAAAGGAATAAAATGACGTCCAAAAG
TTTCGATGCAACCGGATTagcgcacgctaaaagtacacCTGATTTATCCA
AAACAGGTGTTGAATCAGAAGATATTTTAAACGATACAGGAATATCGTAT
AAAGTTTTAGGACAATTAAATCATTTCACTGAAAATCGAGTGCGCGATTT
AACACCGAAAGACAATAAGAAAGAATCGAAGAGAGTTTCTTTAGATGCTA
ATTCAGTTAAACGATTACCTGACACGCCTTTATTCTATGTACCTGGGGAC
GAAGAGAATGGAAGACTAAGCCCAAGTGAGttatcaaaaacatttaaaag
acAGAAATCAGAAGGCTCAATGTTTTACACCgaggaagaaaacaaaaacg
cTAAAAACTTATTATCTCCACCTGCTGAGTCAGCAATTTCATACGAAAAG
CCTCAAAGAAGTGAATCCTTATCAACTCCTAATAAATCGAATAACAAAAG
ATCGAAcaacaataaaataaagaacaaaacaaGACCCAAATCAATGTTTG
ACTATTTTGATCAAGAAATCTTAGGGGAGGATCCTAACGATGAGGTTTGG
TCGTCCGAAGAAAAAGACATTGTACAACAGAACAATTTTGATAATAACGC
TAATTTTTGTCGAGCCAAAATCATGAATAATGCACACCGACTATCTTTAT
GTGATTTGACCAAAACGACTGTGGTTCAAGAGAAAACTTTGTGGGACAAG
TTCAGGAAAGTGGCAGCAAGCAAGAAAGCTAAAGCTTGTAAGTATCTTTT
GAAATTACGTTTCTTCTTCTTGTCAAAAGTTTTTGTCTGAAATCTTTAAG
CTAGCCATGAGTTCGAATGAAATCTTTTCAATCATCAGCTTCCATTTGGG
ATTTATCTAGTTCCGGTGTAGAACATGTTTAGCTTCACAAAACTTTgcat
aaaaattctaaaaattattcttattaattaactaaaaatcaaatttcaag
atttcttgAAACATTTCTTTAACAGGttcgatttttcattttctagtgAT
GGCTTGAATCTCAACCGAATCCAATCTCTAACTGATCGAAAGGTATGGAC
AAAGATGACCAAAATTTATGTATAAAGATGTTTAAATATAATTATGTTAA
TTTATATGAGTAATATATCATTTTTACACCCTTTTTTATTCCATTTTTGT
ACAGAATTTATGATAAGAAATTGAGAAAGTTGAGAATCTAATCGTCAAAA
ATCCTGAATAAGTTATTGCCCAAAAAATCCTGATTTAAATCATCAATTCC
TTAAAGGGTAAACATTGCGTGAACCACGtttcattaaagagaacaattaa
aataacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013835-exon-sc0000174-1491911889:295989..296032 | TCONS_00013835-exon-sc0000174-1491911889:295989..296032 | Clytia hemisphaerica | exon |
| TCONS_00013835-exon-sc0000174-1510915933:295989..296032 | TCONS_00013835-exon-sc0000174-1510915933:295989..296032 | Clytia hemisphaerica | exon |
| TCONS_00013835-exon-sc0000174-1575043694:295989..296032 | TCONS_00013835-exon-sc0000174-1575043694:295989..296032 | Clytia hemisphaerica | exon |
| TCONS_00013835-exon-sc0000174-1491911889:297789..299825 | TCONS_00013835-exon-sc0000174-1491911889:297789..299825 | Clytia hemisphaerica | exon |
| TCONS_00013835-exon-sc0000174-1510915933:297789..299825 | TCONS_00013835-exon-sc0000174-1510915933:297789..299825 | Clytia hemisphaerica | exon |
| TCONS_00013835-exon-sc0000174-1575043694:297789..299825 | TCONS_00013835-exon-sc0000174-1575043694:297789..299825 | Clytia hemisphaerica | exon |
| TCONS_00013835-exon-sc0000174-1491911889:300085..300395 | TCONS_00013835-exon-sc0000174-1491911889:300085..300395 | Clytia hemisphaerica | exon |
| TCONS_00013835-exon-sc0000174-1510915933:300085..300395 | TCONS_00013835-exon-sc0000174-1510915933:300085..300395 | Clytia hemisphaerica | exon |
| TCONS_00013835-exon-sc0000174-1575043694:300085..300395 | TCONS_00013835-exon-sc0000174-1575043694:300085..300395 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:295989..300395 + |
Blast
The following BLAST results are available for this feature:
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