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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013831 ID=TCONS_00013831|Name=TCONS_00013831|organism=Clytia hemisphaerica|type=transcript|length=2481bpRun BLAST on NCBI protein sequence of TCONS_00013831-protein >TCONS_00013831-protein ID=TCONS_00013831-protein|Name=TCONS_00013831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=489bp QVPVNNPAEINEIFDGISYSKGASINRMLHQYVGDEAFREGLTCYLKKYQRun BLAST on NCBI transcript from alignment at sc0000174:135101..156048+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013831 ID=TCONS_00013831|Name=TCONS_00013831|organism=Clytia hemisphaerica|type=transcript|length=20948bp|location=Sequence derived from alignment at sc0000174:135101..156048+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000174:135101..156048+ >TCONS_00013831 ID=TCONS_00013831|Name=TCONS_00013831|organism=Clytia hemisphaerica|type=CDS|length=17640bp|location=Sequence derived from alignment at sc0000174:135101..156048+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013831 vs. Swiss-Prot (Human)
Match: PSA (Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2) HSP 1 Score: 387.111 bits (993), Expect = 1.691e-119 Identity = 202/484 (41.74%), Postives = 291/484 (60.12%), Query Frame = 3
Query: 3 QVPVNNPAEINEIFDGISYSKGASINRMLHQYVGDEAFREGLTCYLKKYQFSNTVTEDLWRELEIVSKKPVREVMATWTEKMGFPVVTISRESINKDKQVLKLSQKKFCVG--YRDKEENTWRVPVNISYLKLDGTEETINSLMADPEFLIYVDNGIENTKWVKLNYGQRDFYRVKYSEAMMKDLIEGIKDRSLPAVDRLGLQNDLFNLVCGGYSTTVEYISLLKAYVDETDPVVWTDILMNIRKLVKLFELTDVYEQFKAFVISLLSPLSARIGPGPQESDSHSTRTLRNSVYSLLGSIGDLCTMKRCTNLFTKLVNDGTAIHPDIRSAVYSTVSSHGNMITFEQLKNLYMGTDVADERVRLLVALGKCRDDEVRSKALEFSISDAVRTQDSVIAISGFF-GSNEGRKAAWSFIKHNWGVVIKRSSGGHQVSRLVEVIIADFASEEEHDDLEDFFNRHPVDEAERAIKQALENVRNNTAWLER 1445
+V V +P+E++EIFD ISYSKGAS+ RMLH Y+GD+ F++G+ YL K+Q N TEDLW LE S KP+ VM TWT++MGFP++ + E + D+ +L+LSQKKFC G Y ++ W VP+ IS + D + + LM PE + + N ++ +WVKLN G FYR +YS AM++ L+ GI+D SLP VDRLGLQNDLF+L G +TVE + +++A+V+E + VW+D+ N+ L L TD YE+ + FV + SP+ R+G P+ + H LR V LG G T++ F V + D+RS VY TV HG+ T + + L+ D+ +E+ R+ LG ++ K L F++S+ VR QD+V I G GS GRKAAW FIK NW + R GG +SRL+++ + FA ++ +++ FF HP AER I+Q EN+ N AWL+R
Sbjct: 420 EVSVGHPSEVDEIFDAISYSKGASVIRMLHDYIGDKDFKKGMNMYLTKFQQKNAATEDLWESLENASGKPIAAVMNTWTKQMGFPLIYVEAEQVEDDR-LLRLSQKKFCAGGSYVGEDCPQWMVPITISTSE-DPNQAKLKILMDKPEMNVVLKN-VKPDQWVKLNLGTVGFYRTQYSSAMLESLLPGIRDLSLPPVDRLGLQNDLFSLARAGIISTVEVLKVMEAFVNEPNYTVWSDLSCNLGILSTLLSHTDFYEEIQEFVKDVFSPIGERLGWDPKPGEGHLDALLRGLVLGKLGKAGHKATLEEARRRFKDHVEGKQILSADLRSPVYLTVLKHGDGTTLDIMLKLHKQADMQEEKNRIERVLGATLLPDLIQKVLTFALSEEVRPQDTVSVIGGVAGGSKHGRKAAWKFIKDNWEELYNRYQGGFLISRLIKLSVEGFAVDKMAGEVKAFFESHPAPSAERTIQQCCENILLNAAWLKR 900 The following BLAST results are available for this feature:
BLAST of TCONS_00013831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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